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Update app.py
Browse files
app.py
CHANGED
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@@ -10,9 +10,14 @@ from torchvision import transforms
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import torchvision.transforms.functional as TF
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import urllib.request
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import os
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device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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model = None
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# Define your Attention U-Net architecture (from your training code)
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class DoubleConv(nn.Module):
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@@ -56,7 +61,7 @@ class AttentionBlock(nn.Module):
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x1 = self.W_x(x)
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psi = self.relu(g1 + x1)
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psi = self.psi(psi)
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return x * psi
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class AttentionUNET(nn.Module):
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def __init__(self, in_channels=1, out_channels=1, features=[32, 64, 128, 256]):
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@@ -83,8 +88,9 @@ class AttentionUNET(nn.Module):
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self.final_conv = nn.Conv2d(features[0], out_channels, kernel_size=1)
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def forward(self, x):
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skip_connections = []
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for down in self.downs:
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x = down(x)
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@@ -92,20 +98,39 @@ class AttentionUNET(nn.Module):
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x = self.pool(x)
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x = self.bottleneck(x)
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skip_connections = skip_connections[::-1]
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for idx in range(0, len(self.ups), 2):
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x = self.ups[idx](x)
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skip_connection = skip_connections[idx//2]
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if x.shape != skip_connection.shape:
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x = TF.resize(x, size=skip_connection.shape[2:])
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skip_connection = self.attentions[idx // 2](skip_connection, x)
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concat_skip = torch.cat((skip_connection, x), dim=1)
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x = self.ups[idx+1](concat_skip)
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def download_model():
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"""Download your trained model from HuggingFace"""
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@@ -113,7 +138,7 @@ def download_model():
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model_path = "best_attention_model.pth.tar"
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if not os.path.exists(model_path):
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print("π₯ Downloading
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try:
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urllib.request.urlretrieve(model_url, model_path)
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print("β
Model downloaded successfully!")
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@@ -125,88 +150,323 @@ def download_model():
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return model_path
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def
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"""Load
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global model
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if model is None:
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try:
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print("π Loading
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# Download model if needed
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model_path = download_model()
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if model_path is None:
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return None
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# Initialize your model architecture
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model = AttentionUNET(in_channels=1, out_channels=1).to(device)
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# Load your trained weights
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checkpoint = torch.load(model_path, map_location=device, weights_only=True)
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model.load_state_dict(checkpoint["state_dict"])
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model.eval()
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print("β
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except Exception as e:
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print(f"β Error loading
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model = None
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return model
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def
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"""
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if image.mode != 'L':
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image = image.convert('L')
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# Use the exact same transform as your Colab code
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val_test_transform = transforms.Compose([
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transforms.Resize((256,256)),
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transforms.ToTensor()
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])
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return val_test_transform(image).unsqueeze(0)
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def
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if current_model is None:
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return None, "β Failed to load
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if image is None:
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return None, "β οΈ Please upload an image first."
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try:
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print("π§ Processing with
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input_tensor = preprocess_for_your_model(image).to(device)
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#
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with torch.no_grad():
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pred_mask_binary = (pred_mask > 0.5).float()
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# Convert to numpy (like your Colab code)
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pred_mask_np = pred_mask_binary.cpu().squeeze().numpy()
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original_np = np.array(image.convert('L').resize((256, 256)))
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#
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#
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#
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cmaps = ['gray', 'hot', 'gray', 'gray']
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plt.tight_layout()
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result_image = Image.open(buf)
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# Calculate statistics
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tumor_pixels = np.sum(pred_mask_np)
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total_pixels = pred_mask_np.size
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tumor_percentage = (tumor_pixels / total_pixels) * 100
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mean_confidence = torch.mean(pred_mask).item()
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analysis_text = f"""
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## π§
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### π Detection Summary
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- **Status**: {'π΄ TUMOR DETECTED' if tumor_pixels > 50 else 'π’ NO SIGNIFICANT TUMOR'}
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- **Tumor
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- **Tumor Pixels**: {tumor_pixels:,} pixels
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- **Max Confidence**: {max_confidence:.4f}
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- **Mean Confidence**: {mean_confidence:.4f}
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-
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- **
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- **
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- **
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- **
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### π Processing
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- **Preprocessing**: Resize(256Γ256) +
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### β οΈ Medical Disclaimer
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This
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Results
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### π
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β
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print(f"β
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return result_image, analysis_text
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except Exception as e:
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error_msg = f"β Error
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print(error_msg)
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return None, error_msg
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def clear_all():
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return None, None, "Upload a brain MRI image to test
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# Enhanced CSS
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css = """
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.gradio-container {
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max-width:
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margin: auto !important;
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}
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#title {
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text-align: center;
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background: linear-gradient(135deg, #
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color: white;
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padding:
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border-radius: 15px;
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}
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"""
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# Create Gradio interface
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with gr.Blocks(css=css, title="π§
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gr.HTML("""
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<div id="title">
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<h1>π§
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<p style="font-size:
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</p>
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<p style="font-size:
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</p>
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</div>
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""")
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with gr.Row():
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with gr.Column(scale=1):
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gr.Markdown("### π€
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)
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with gr.Row():
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analyze_btn = gr.Button(
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gr.HTML("""
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<div
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<h4 style="
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<
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</div>
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""")
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with gr.Column(scale=2):
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gr.Markdown("### π
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output_image = gr.Image(
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label="
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type="pil",
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height=
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#
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gr.HTML("""
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<div style="margin-top: 30px; padding:
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<div style="display: grid; grid-template-columns: 1fr 1fr; gap: 30px;">
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<div>
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<h4 style="color: #
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<p><strong>
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</div>
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<div>
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<h4 style="color: #
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<p style="color: #
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This
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-
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-
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</p>
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</div>
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</div>
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-
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<
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-
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</p>
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</div>
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| 377 |
""")
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# Event handlers
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analyze_btn.click(
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-
fn=
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-
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| 383 |
outputs=[output_image, analysis_output],
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| 384 |
show_progress=True
|
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)
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clear_btn.click(
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fn=clear_all,
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inputs=[],
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-
outputs=[image_input,
|
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)
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| 393 |
if __name__ == "__main__":
|
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-
print("π Starting
|
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-
print("
|
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-
print("
|
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-
print("
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| 398 |
|
| 399 |
app.launch(
|
| 400 |
server_name="0.0.0.0",
|
| 401 |
server_port=7860,
|
| 402 |
show_error=True,
|
| 403 |
share=False
|
| 404 |
-
)
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|
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|
| 10 |
import torchvision.transforms.functional as TF
|
| 11 |
import urllib.request
|
| 12 |
import os
|
| 13 |
+
import kagglehub
|
| 14 |
+
import random
|
| 15 |
+
from pathlib import Path
|
| 16 |
+
import seaborn as sns
|
| 17 |
|
| 18 |
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
|
| 19 |
model = None
|
| 20 |
+
dataset_path = None
|
| 21 |
|
| 22 |
# Define your Attention U-Net architecture (from your training code)
|
| 23 |
class DoubleConv(nn.Module):
|
|
|
|
| 61 |
x1 = self.W_x(x)
|
| 62 |
psi = self.relu(g1 + x1)
|
| 63 |
psi = self.psi(psi)
|
| 64 |
+
return x * psi, psi # Return attention coefficients for visualization
|
| 65 |
|
| 66 |
class AttentionUNET(nn.Module):
|
| 67 |
def __init__(self, in_channels=1, out_channels=1, features=[32, 64, 128, 256]):
|
|
|
|
| 88 |
|
| 89 |
self.final_conv = nn.Conv2d(features[0], out_channels, kernel_size=1)
|
| 90 |
|
| 91 |
+
def forward(self, x, return_attention=False):
|
| 92 |
skip_connections = []
|
| 93 |
+
attention_maps = []
|
| 94 |
|
| 95 |
for down in self.downs:
|
| 96 |
x = down(x)
|
|
|
|
| 98 |
x = self.pool(x)
|
| 99 |
|
| 100 |
x = self.bottleneck(x)
|
| 101 |
+
skip_connections = skip_connections[::-1]
|
| 102 |
|
| 103 |
+
for idx in range(0, len(self.ups), 2):
|
| 104 |
x = self.ups[idx](x)
|
| 105 |
skip_connection = skip_connections[idx//2]
|
| 106 |
|
| 107 |
if x.shape != skip_connection.shape:
|
| 108 |
x = TF.resize(x, size=skip_connection.shape[2:])
|
| 109 |
|
| 110 |
+
skip_connection, attention_coeff = self.attentions[idx // 2](skip_connection, x)
|
| 111 |
+
if return_attention:
|
| 112 |
+
attention_maps.append(attention_coeff)
|
| 113 |
+
|
| 114 |
concat_skip = torch.cat((skip_connection, x), dim=1)
|
| 115 |
x = self.ups[idx+1](concat_skip)
|
| 116 |
|
| 117 |
+
output = self.final_conv(x)
|
| 118 |
+
|
| 119 |
+
if return_attention:
|
| 120 |
+
return output, attention_maps
|
| 121 |
+
return output
|
| 122 |
+
|
| 123 |
+
def download_dataset():
|
| 124 |
+
"""Download Brain Tumor Segmentation dataset from Kaggle"""
|
| 125 |
+
global dataset_path
|
| 126 |
+
try:
|
| 127 |
+
print("π₯ Downloading Brain Tumor Segmentation dataset...")
|
| 128 |
+
dataset_path = kagglehub.dataset_download('nikhilroxtomar/brain-tumor-segmentation')
|
| 129 |
+
print(f"β
Dataset downloaded to: {dataset_path}")
|
| 130 |
+
return dataset_path
|
| 131 |
+
except Exception as e:
|
| 132 |
+
print(f"β Failed to download dataset: {e}")
|
| 133 |
+
return None
|
| 134 |
|
| 135 |
def download_model():
|
| 136 |
"""Download your trained model from HuggingFace"""
|
|
|
|
| 138 |
model_path = "best_attention_model.pth.tar"
|
| 139 |
|
| 140 |
if not os.path.exists(model_path):
|
| 141 |
+
print("π₯ Downloading trained model...")
|
| 142 |
try:
|
| 143 |
urllib.request.urlretrieve(model_url, model_path)
|
| 144 |
print("β
Model downloaded successfully!")
|
|
|
|
| 150 |
|
| 151 |
return model_path
|
| 152 |
|
| 153 |
+
def load_attention_model():
|
| 154 |
+
"""Load trained Attention U-Net model"""
|
| 155 |
global model
|
| 156 |
if model is None:
|
| 157 |
try:
|
| 158 |
+
print("π Loading Attention U-Net model...")
|
| 159 |
|
|
|
|
| 160 |
model_path = download_model()
|
| 161 |
if model_path is None:
|
| 162 |
return None
|
| 163 |
|
|
|
|
| 164 |
model = AttentionUNET(in_channels=1, out_channels=1).to(device)
|
|
|
|
|
|
|
| 165 |
checkpoint = torch.load(model_path, map_location=device, weights_only=True)
|
| 166 |
model.load_state_dict(checkpoint["state_dict"])
|
| 167 |
model.eval()
|
| 168 |
|
| 169 |
+
print("β
Attention U-Net model loaded successfully!")
|
| 170 |
except Exception as e:
|
| 171 |
+
print(f"β Error loading model: {e}")
|
| 172 |
model = None
|
| 173 |
return model
|
| 174 |
|
| 175 |
+
def get_random_sample_from_dataset():
|
| 176 |
+
"""Get a random sample image and ground truth mask from the dataset"""
|
| 177 |
+
global dataset_path
|
| 178 |
+
|
| 179 |
+
if dataset_path is None:
|
| 180 |
+
dataset_path = download_dataset()
|
| 181 |
+
if dataset_path is None:
|
| 182 |
+
return None, None
|
| 183 |
+
|
| 184 |
+
try:
|
| 185 |
+
images_path = Path(dataset_path) / "images"
|
| 186 |
+
masks_path = Path(dataset_path) / "masks"
|
| 187 |
+
|
| 188 |
+
if not images_path.exists() or not masks_path.exists():
|
| 189 |
+
print("β Dataset structure not found")
|
| 190 |
+
return None, None
|
| 191 |
+
|
| 192 |
+
# Get all image files
|
| 193 |
+
image_files = list(images_path.glob("*.jpg")) + list(images_path.glob("*.png")) + list(images_path.glob("*.tif"))
|
| 194 |
+
|
| 195 |
+
if not image_files:
|
| 196 |
+
print("β No image files found in dataset")
|
| 197 |
+
return None, None
|
| 198 |
+
|
| 199 |
+
# Select random image
|
| 200 |
+
random_image_file = random.choice(image_files)
|
| 201 |
+
image_name = random_image_file.stem
|
| 202 |
+
|
| 203 |
+
# Find corresponding mask
|
| 204 |
+
possible_mask_extensions = ['.jpg', '.png', '.tif', '.gif']
|
| 205 |
+
mask_file = None
|
| 206 |
+
|
| 207 |
+
for ext in possible_mask_extensions:
|
| 208 |
+
potential_mask = masks_path / f"{image_name}{ext}"
|
| 209 |
+
if potential_mask.exists():
|
| 210 |
+
mask_file = potential_mask
|
| 211 |
+
break
|
| 212 |
+
|
| 213 |
+
if mask_file is None:
|
| 214 |
+
print(f"β No corresponding mask found for {image_name}")
|
| 215 |
+
return None, None
|
| 216 |
+
|
| 217 |
+
# Load image and mask
|
| 218 |
+
image = Image.open(random_image_file).convert('L')
|
| 219 |
+
mask = Image.open(mask_file).convert('L')
|
| 220 |
+
|
| 221 |
+
print(f"β
Loaded random sample: {image_name}")
|
| 222 |
+
return image, mask
|
| 223 |
+
|
| 224 |
+
except Exception as e:
|
| 225 |
+
print(f"β Error loading random sample: {e}")
|
| 226 |
+
return None, None
|
| 227 |
+
|
| 228 |
+
def test_time_augmentation(model, image_tensor):
|
| 229 |
+
"""Apply Test-Time Augmentation (TTA) for robust predictions"""
|
| 230 |
+
augmentations = [
|
| 231 |
+
lambda x: x, # Original
|
| 232 |
+
lambda x: torch.flip(x, dims=[3]), # Horizontal flip
|
| 233 |
+
lambda x: torch.flip(x, dims=[2]), # Vertical flip
|
| 234 |
+
lambda x: torch.flip(x, dims=[2, 3]), # Both flips
|
| 235 |
+
lambda x: torch.rot90(x, k=1, dims=[2, 3]), # 90Β° rotation
|
| 236 |
+
lambda x: torch.rot90(x, k=3, dims=[2, 3]), # 270Β° rotation
|
| 237 |
+
]
|
| 238 |
+
|
| 239 |
+
reverse_augmentations = [
|
| 240 |
+
lambda x: x, # Original
|
| 241 |
+
lambda x: torch.flip(x, dims=[3]), # Reverse horizontal flip
|
| 242 |
+
lambda x: torch.flip(x, dims=[2]), # Reverse vertical flip
|
| 243 |
+
lambda x: torch.flip(x, dims=[2, 3]), # Reverse both flips
|
| 244 |
+
lambda x: torch.rot90(x, k=3, dims=[2, 3]), # Reverse 90Β° rotation
|
| 245 |
+
lambda x: torch.rot90(x, k=1, dims=[2, 3]), # Reverse 270Β° rotation
|
| 246 |
+
]
|
| 247 |
+
|
| 248 |
+
predictions = []
|
| 249 |
+
|
| 250 |
+
with torch.no_grad():
|
| 251 |
+
for aug, rev_aug in zip(augmentations, reverse_augmentations):
|
| 252 |
+
# Apply augmentation
|
| 253 |
+
aug_input = aug(image_tensor)
|
| 254 |
+
|
| 255 |
+
# Get prediction
|
| 256 |
+
pred = torch.sigmoid(model(aug_input))
|
| 257 |
+
|
| 258 |
+
# Reverse augmentation on prediction
|
| 259 |
+
pred = rev_aug(pred)
|
| 260 |
+
|
| 261 |
+
predictions.append(pred)
|
| 262 |
+
|
| 263 |
+
# Average all predictions
|
| 264 |
+
tta_prediction = torch.mean(torch.stack(predictions), dim=0)
|
| 265 |
+
|
| 266 |
+
return tta_prediction
|
| 267 |
+
|
| 268 |
+
def generate_attention_heatmaps(model, image_tensor):
|
| 269 |
+
"""Generate attention heatmaps for interpretability"""
|
| 270 |
+
with torch.no_grad():
|
| 271 |
+
pred, attention_maps = model(image_tensor, return_attention=True)
|
| 272 |
+
|
| 273 |
+
# Convert attention maps to numpy for visualization
|
| 274 |
+
heatmaps = []
|
| 275 |
+
for i, att_map in enumerate(attention_maps):
|
| 276 |
+
# Resize attention map to match input size
|
| 277 |
+
att_map_resized = TF.resize(att_map, (256, 256))
|
| 278 |
+
att_np = att_map_resized.cpu().squeeze().numpy()
|
| 279 |
+
heatmaps.append(att_np)
|
| 280 |
+
|
| 281 |
+
return heatmaps
|
| 282 |
+
|
| 283 |
+
def preprocess_image(image):
|
| 284 |
+
"""Preprocessing exactly like training code"""
|
| 285 |
if image.mode != 'L':
|
| 286 |
image = image.convert('L')
|
| 287 |
|
|
|
|
| 288 |
val_test_transform = transforms.Compose([
|
| 289 |
+
transforms.Resize((256, 256)),
|
| 290 |
transforms.ToTensor()
|
| 291 |
])
|
| 292 |
|
| 293 |
+
return val_test_transform(image).unsqueeze(0)
|
| 294 |
|
| 295 |
+
def calculate_metrics(pred_mask, ground_truth_mask):
|
| 296 |
+
"""Calculate Dice and IoU metrics"""
|
| 297 |
+
pred_binary = (pred_mask > 0.5).float()
|
| 298 |
+
gt_binary = (ground_truth_mask > 0.5).float()
|
| 299 |
+
|
| 300 |
+
# Dice coefficient
|
| 301 |
+
intersection = torch.sum(pred_binary * gt_binary)
|
| 302 |
+
dice = (2.0 * intersection) / (torch.sum(pred_binary) + torch.sum(gt_binary) + 1e-8)
|
| 303 |
+
|
| 304 |
+
# IoU
|
| 305 |
+
union = torch.sum(pred_binary) + torch.sum(gt_binary) - intersection
|
| 306 |
+
iou = intersection / (union + 1e-8)
|
| 307 |
+
|
| 308 |
+
return dice.item(), iou.item()
|
| 309 |
+
|
| 310 |
+
def predict_with_enhancements(image, ground_truth=None, use_tta=True, show_attention=True):
|
| 311 |
+
"""Enhanced prediction with TTA and attention visualization"""
|
| 312 |
+
current_model = load_attention_model()
|
| 313 |
|
| 314 |
if current_model is None:
|
| 315 |
+
return None, "β Failed to load trained model."
|
| 316 |
|
| 317 |
if image is None:
|
| 318 |
return None, "β οΈ Please upload an image first."
|
| 319 |
|
| 320 |
try:
|
| 321 |
+
print("π§ Processing with enhanced Attention U-Net...")
|
| 322 |
|
| 323 |
+
input_tensor = preprocess_image(image).to(device)
|
|
|
|
| 324 |
|
| 325 |
+
# Standard prediction
|
| 326 |
with torch.no_grad():
|
| 327 |
+
standard_pred = torch.sigmoid(current_model(input_tensor))
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 328 |
|
| 329 |
+
# Test-Time Augmentation
|
| 330 |
+
if use_tta:
|
| 331 |
+
tta_pred = test_time_augmentation(current_model, input_tensor)
|
| 332 |
+
final_pred = tta_pred
|
| 333 |
+
else:
|
| 334 |
+
final_pred = standard_pred
|
| 335 |
|
| 336 |
+
# Generate attention heatmaps
|
| 337 |
+
attention_heatmaps = []
|
| 338 |
+
if show_attention:
|
| 339 |
+
attention_heatmaps = generate_attention_heatmaps(current_model, input_tensor)
|
| 340 |
|
| 341 |
+
# Convert predictions to binary
|
| 342 |
+
pred_mask_binary = (final_pred > 0.5).float()
|
| 343 |
+
pred_mask_np = pred_mask_binary.cpu().squeeze().numpy()
|
| 344 |
+
standard_mask_np = (standard_pred > 0.5).float().cpu().squeeze().numpy()
|
| 345 |
|
| 346 |
+
# Prepare images for visualization
|
| 347 |
+
original_np = np.array(image.convert('L').resize((256, 256)))
|
|
|
|
| 348 |
|
| 349 |
+
# Create comprehensive visualization
|
| 350 |
+
if ground_truth is not None:
|
| 351 |
+
# With ground truth comparison
|
| 352 |
+
gt_np = np.array(ground_truth.convert('L').resize((256, 256)))
|
| 353 |
+
gt_binary = (gt_np > 127).astype(np.float32) # Threshold ground truth
|
| 354 |
+
|
| 355 |
+
# Calculate metrics
|
| 356 |
+
gt_tensor = torch.tensor(gt_binary).unsqueeze(0).unsqueeze(0).to(device)
|
| 357 |
+
dice_score, iou_score = calculate_metrics(final_pred, gt_tensor)
|
| 358 |
+
|
| 359 |
+
# Create figure with ground truth comparison
|
| 360 |
+
n_cols = 6 if show_attention and attention_heatmaps else 5
|
| 361 |
+
fig, axes = plt.subplots(2, n_cols, figsize=(4*n_cols, 8))
|
| 362 |
+
fig.suptitle('π§ Enhanced Attention U-Net Analysis with Ground Truth Comparison', fontsize=16, weight='bold')
|
| 363 |
+
|
| 364 |
+
# Top row - Standard analysis
|
| 365 |
+
axes[0, 0].imshow(original_np, cmap='gray')
|
| 366 |
+
axes[0, 0].set_title('Original Image', fontsize=12, weight='bold')
|
| 367 |
+
axes[0, 0].axis('off')
|
| 368 |
+
|
| 369 |
+
axes[0, 1].imshow(standard_mask_np * 255, cmap='hot')
|
| 370 |
+
axes[0, 1].set_title('Standard Prediction', fontsize=12, weight='bold')
|
| 371 |
+
axes[0, 1].axis('off')
|
| 372 |
+
|
| 373 |
+
axes[0, 2].imshow(pred_mask_np * 255, cmap='hot')
|
| 374 |
+
axes[0, 2].set_title(f'{"TTA Enhanced" if use_tta else "Final Prediction"}', fontsize=12, weight='bold')
|
| 375 |
+
axes[0, 2].axis('off')
|
| 376 |
+
|
| 377 |
+
axes[0, 3].imshow(gt_binary * 255, cmap='hot')
|
| 378 |
+
axes[0, 3].set_title('Ground Truth', fontsize=12, weight='bold')
|
| 379 |
+
axes[0, 3].axis('off')
|
| 380 |
+
|
| 381 |
+
# Overlay comparison
|
| 382 |
+
overlay = original_np.copy()
|
| 383 |
+
overlay = np.stack([overlay, overlay, overlay], axis=-1)
|
| 384 |
+
overlay[pred_mask_np > 0.5] = [255, 0, 0] # Red for prediction
|
| 385 |
+
overlay[gt_binary > 0.5] = [0, 255, 0] # Green for ground truth
|
| 386 |
+
overlap = (pred_mask_np > 0.5) & (gt_binary > 0.5)
|
| 387 |
+
overlay[overlap] = [255, 255, 0] # Yellow for overlap
|
| 388 |
+
|
| 389 |
+
axes[0, 4].imshow(overlay.astype(np.uint8))
|
| 390 |
+
axes[0, 4].set_title('Overlay (Red:Pred, Green:GT, Yellow:Match)', fontsize=10, weight='bold')
|
| 391 |
+
axes[0, 4].axis('off')
|
| 392 |
+
|
| 393 |
+
if show_attention and attention_heatmaps:
|
| 394 |
+
# Show combined attention
|
| 395 |
+
combined_attention = np.mean(attention_heatmaps, axis=0)
|
| 396 |
+
axes[0, 5].imshow(combined_attention, cmap='jet', alpha=0.7)
|
| 397 |
+
axes[0, 5].imshow(original_np, cmap='gray', alpha=0.3)
|
| 398 |
+
axes[0, 5].set_title('Attention Heatmap', fontsize=12, weight='bold')
|
| 399 |
+
axes[0, 5].axis('off')
|
| 400 |
+
|
| 401 |
+
# Bottom row - Individual attention maps or detailed analysis
|
| 402 |
+
if show_attention and attention_heatmaps:
|
| 403 |
+
for i, heatmap in enumerate(attention_heatmaps[:n_cols]):
|
| 404 |
+
axes[1, i].imshow(heatmap, cmap='jet', alpha=0.7)
|
| 405 |
+
axes[1, i].imshow(original_np, cmap='gray', alpha=0.3)
|
| 406 |
+
axes[1, i].set_title(f'Attention Gate {i+1}', fontsize=10, weight='bold')
|
| 407 |
+
axes[1, i].axis('off')
|
| 408 |
+
else:
|
| 409 |
+
# Show tumor extraction and analysis
|
| 410 |
+
tumor_only = np.where(pred_mask_np == 1, original_np, 255)
|
| 411 |
+
inv_mask = np.where(pred_mask_np == 1, 0, 255)
|
| 412 |
+
|
| 413 |
+
axes[1, 0].imshow(tumor_only, cmap='gray')
|
| 414 |
+
axes[1, 0].set_title('Tumor Extraction', fontsize=12, weight='bold')
|
| 415 |
+
axes[1, 0].axis('off')
|
| 416 |
+
|
| 417 |
+
axes[1, 1].imshow(inv_mask, cmap='gray')
|
| 418 |
+
axes[1, 1].set_title('Inverted Mask', fontsize=12, weight='bold')
|
| 419 |
+
axes[1, 1].axis('off')
|
| 420 |
+
|
| 421 |
+
# Difference map
|
| 422 |
+
diff_map = np.abs(pred_mask_np - gt_binary)
|
| 423 |
+
axes[1, 2].imshow(diff_map, cmap='Reds')
|
| 424 |
+
axes[1, 2].set_title('Difference Map', fontsize=12, weight='bold')
|
| 425 |
+
axes[1, 2].axis('off')
|
| 426 |
+
|
| 427 |
+
# Clear remaining axes
|
| 428 |
+
for j in range(3, n_cols):
|
| 429 |
+
axes[1, j].axis('off')
|
| 430 |
+
else:
|
| 431 |
+
# Without ground truth
|
| 432 |
+
n_cols = 5 if show_attention and attention_heatmaps else 4
|
| 433 |
+
fig, axes = plt.subplots(2, n_cols, figsize=(4*n_cols, 8))
|
| 434 |
+
fig.suptitle('π§ Enhanced Attention U-Net Analysis', fontsize=16, weight='bold')
|
| 435 |
+
|
| 436 |
+
# Top row
|
| 437 |
+
images = [original_np, standard_mask_np * 255, pred_mask_np * 255]
|
| 438 |
+
titles = ["Original Image", "Standard Prediction", f'{"TTA Enhanced" if use_tta else "Final Prediction"}']
|
| 439 |
+
cmaps = ['gray', 'hot', 'hot']
|
| 440 |
+
|
| 441 |
+
for i in range(3):
|
| 442 |
+
axes[0, i].imshow(images[i], cmap=cmaps[i])
|
| 443 |
+
axes[0, i].set_title(titles[i], fontsize=12, weight='bold')
|
| 444 |
+
axes[0, i].axis('off')
|
| 445 |
+
|
| 446 |
+
# Tumor extraction
|
| 447 |
+
tumor_only = np.where(pred_mask_np == 1, original_np, 255)
|
| 448 |
+
axes[0, 3].imshow(tumor_only, cmap='gray')
|
| 449 |
+
axes[0, 3].set_title('Tumor Extraction', fontsize=12, weight='bold')
|
| 450 |
+
axes[0, 3].axis('off')
|
| 451 |
+
|
| 452 |
+
if show_attention and attention_heatmaps:
|
| 453 |
+
combined_attention = np.mean(attention_heatmaps, axis=0)
|
| 454 |
+
axes[0, 4].imshow(combined_attention, cmap='jet', alpha=0.7)
|
| 455 |
+
axes[0, 4].imshow(original_np, cmap='gray', alpha=0.3)
|
| 456 |
+
axes[0, 4].set_title('Combined Attention', fontsize=12, weight='bold')
|
| 457 |
+
axes[0, 4].axis('off')
|
| 458 |
+
|
| 459 |
+
# Bottom row - Individual attention maps
|
| 460 |
+
if show_attention and attention_heatmaps:
|
| 461 |
+
for i, heatmap in enumerate(attention_heatmaps[:n_cols]):
|
| 462 |
+
axes[1, i].imshow(heatmap, cmap='jet', alpha=0.7)
|
| 463 |
+
axes[1, i].imshow(original_np, cmap='gray', alpha=0.3)
|
| 464 |
+
axes[1, i].set_title(f'Attention Gate {i+1}', fontsize=10, weight='bold')
|
| 465 |
+
axes[1, i].axis('off')
|
| 466 |
+
else:
|
| 467 |
+
# Clear bottom row
|
| 468 |
+
for j in range(n_cols):
|
| 469 |
+
axes[1, j].axis('off')
|
| 470 |
|
| 471 |
plt.tight_layout()
|
| 472 |
|
|
|
|
| 478 |
|
| 479 |
result_image = Image.open(buf)
|
| 480 |
|
| 481 |
+
# Calculate statistics
|
| 482 |
tumor_pixels = np.sum(pred_mask_np)
|
| 483 |
total_pixels = pred_mask_np.size
|
| 484 |
tumor_percentage = (tumor_pixels / total_pixels) * 100
|
| 485 |
|
| 486 |
+
max_confidence = torch.max(final_pred).item()
|
| 487 |
+
mean_confidence = torch.mean(final_pred).item()
|
|
|
|
| 488 |
|
| 489 |
+
# Enhanced analysis text
|
| 490 |
analysis_text = f"""
|
| 491 |
+
## π§ Enhanced Attention U-Net Analysis Results
|
| 492 |
|
| 493 |
+
### π Detection Summary
|
| 494 |
- **Status**: {'π΄ TUMOR DETECTED' if tumor_pixels > 50 else 'π’ NO SIGNIFICANT TUMOR'}
|
| 495 |
+
- **Tumor Coverage**: {tumor_percentage:.2f}% of brain region
|
| 496 |
- **Tumor Pixels**: {tumor_pixels:,} pixels
|
| 497 |
- **Max Confidence**: {max_confidence:.4f}
|
| 498 |
- **Mean Confidence**: {mean_confidence:.4f}
|
| 499 |
+
"""
|
| 500 |
|
| 501 |
+
if ground_truth is not None:
|
| 502 |
+
analysis_text += f"""
|
| 503 |
+
### π― Ground Truth Comparison
|
| 504 |
+
- **Dice Score**: {dice_score:.4f} {'β
Excellent' if dice_score > 0.8 else 'β οΈ Good' if dice_score > 0.6 else 'β Poor'}
|
| 505 |
+
- **IoU Score**: {iou_score:.4f} {'β
Excellent' if iou_score > 0.7 else 'β οΈ Good' if iou_score > 0.5 else 'β Poor'}
|
| 506 |
+
- **Model Accuracy**: {'High precision match' if dice_score > 0.8 else 'Reasonable match' if dice_score > 0.6 else 'Needs improvement'}
|
| 507 |
+
"""
|
| 508 |
|
| 509 |
+
analysis_text += f"""
|
| 510 |
+
### π Enhancement Features
|
| 511 |
+
- **Test-Time Augmentation**: {'β
Applied (6 augmentations averaged)' if use_tta else 'β Disabled'}
|
| 512 |
+
- **Attention Visualization**: {'β
Generated attention heatmaps' if show_attention else 'β Disabled'}
|
| 513 |
+
- **Boundary Enhancement**: {'β
TTA improves edge detection' if use_tta else 'β οΈ Standard prediction only'}
|
| 514 |
+
- **Interpretability**: {'β
Attention gates show focus areas' if show_attention else 'β Black box mode'}
|
| 515 |
+
|
| 516 |
+
### π¬ Model Architecture
|
| 517 |
+
- **Base Model**: Attention U-Net with skip connections
|
| 518 |
+
- **Training Performance**: Dice: 0.8420, IoU: 0.7297, Accuracy: 98.90%
|
| 519 |
+
- **Attention Gates**: 4 levels with soft attention mechanism
|
| 520 |
+
- **Features Channels**: [32, 64, 128, 256] progression
|
| 521 |
+
- **Device**: {device.type.upper()}
|
| 522 |
|
| 523 |
+
### π Enhanced Processing Pipeline
|
| 524 |
+
- **Preprocessing**: Resize(256Γ256) + Normalization
|
| 525 |
+
- **Augmentations**: Flips (H,V), Rotations (90Β°,270Β°), Combined
|
| 526 |
+
- **Attention Fusion**: Multi-scale attention coefficient extraction
|
| 527 |
+
- **Post-processing**: Ensemble averaging + Binary thresholding (0.5)
|
| 528 |
|
| 529 |
+
### β οΈ Medical Disclaimer
|
| 530 |
+
This enhanced AI model is for **research and educational purposes only**.
|
| 531 |
+
Results include advanced features for better accuracy and interpretability.
|
| 532 |
+
Always consult medical professionals for clinical applications.
|
| 533 |
|
| 534 |
+
### π Research Contributions
|
| 535 |
+
β
**Attention Gates**: Enhanced boundary detection through selective feature passing
|
| 536 |
+
β
**Test-Time Augmentation**: Robust predictions via ensemble averaging
|
| 537 |
+
β
**Interpretability**: Attention heatmaps for clinical trust and validation
|
| 538 |
+
β
**Efficiency**: No retraining required, minimal computational overhead
|
| 539 |
+
"""
|
| 540 |
|
| 541 |
+
print(f"β
Enhanced analysis completed! Tumor coverage: {tumor_percentage:.2f}%")
|
| 542 |
return result_image, analysis_text
|
| 543 |
|
| 544 |
except Exception as e:
|
| 545 |
+
error_msg = f"β Error during enhanced analysis: {str(e)}"
|
| 546 |
print(error_msg)
|
| 547 |
return None, error_msg
|
| 548 |
|
| 549 |
+
def load_random_sample():
|
| 550 |
+
"""Load a random sample from the dataset"""
|
| 551 |
+
image, mask = get_random_sample_from_dataset()
|
| 552 |
+
if image is None:
|
| 553 |
+
return None, None, "β Failed to load random sample from dataset"
|
| 554 |
+
return image, mask, "β
Random sample loaded from dataset"
|
| 555 |
+
|
| 556 |
def clear_all():
|
| 557 |
+
return None, None, None, "Upload a brain MRI image or load a random sample to test the enhanced model"
|
| 558 |
|
| 559 |
+
# Enhanced professional CSS
|
| 560 |
css = """
|
| 561 |
.gradio-container {
|
| 562 |
+
max-width: 1600px !important;
|
| 563 |
margin: auto !important;
|
| 564 |
+
font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;
|
| 565 |
}
|
| 566 |
+
|
| 567 |
#title {
|
| 568 |
text-align: center;
|
| 569 |
+
background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);
|
| 570 |
color: white;
|
| 571 |
+
padding: 40px;
|
| 572 |
+
border-radius: 20px;
|
| 573 |
+
margin-bottom: 30px;
|
| 574 |
+
box-shadow: 0 12px 24px rgba(102, 126, 234, 0.4);
|
| 575 |
+
}
|
| 576 |
+
|
| 577 |
+
.feature-box {
|
| 578 |
+
background: linear-gradient(135deg, #f093fb 0%, #f5576c 100%);
|
| 579 |
border-radius: 15px;
|
| 580 |
+
padding: 25px;
|
| 581 |
+
margin: 15px 0;
|
| 582 |
+
color: white;
|
| 583 |
+
box-shadow: 0 8px 16px rgba(240, 147, 251, 0.3);
|
| 584 |
+
}
|
| 585 |
+
|
| 586 |
+
.metric-card {
|
| 587 |
+
background: linear-gradient(135deg, #4facfe 0%, #00f2fe 100%);
|
| 588 |
+
border-radius: 12px;
|
| 589 |
+
padding: 20px;
|
| 590 |
+
text-align: center;
|
| 591 |
+
margin: 10px;
|
| 592 |
+
box-shadow: 0 6px 12px rgba(79, 172, 254, 0.3);
|
| 593 |
+
}
|
| 594 |
+
|
| 595 |
+
.enhancement-badge {
|
| 596 |
+
display: inline-block;
|
| 597 |
+
background: linear-gradient(45deg, #fa709a 0%, #fee140 100%);
|
| 598 |
+
color: white;
|
| 599 |
+
padding: 8px 16px;
|
| 600 |
+
border-radius: 25px;
|
| 601 |
+
margin: 5px;
|
| 602 |
+
font-weight: bold;
|
| 603 |
+
box-shadow: 0 4px 8px rgba(250, 112, 154, 0.3);
|
| 604 |
}
|
| 605 |
"""
|
| 606 |
|
| 607 |
+
# Create enhanced Gradio interface
|
| 608 |
+
with gr.Blocks(css=css, title="π§ Enhanced Brain Tumor Segmentation", theme=gr.themes.Soft()) as app:
|
| 609 |
|
| 610 |
gr.HTML("""
|
| 611 |
<div id="title">
|
| 612 |
+
<h1>π§ Enhanced Attention U-Net Brain Tumor Segmentation</h1>
|
| 613 |
+
<p style="font-size: 20px; margin-top: 20px; font-weight: 300;">
|
| 614 |
+
π Advanced Medical AI with Test-Time Augmentation & Attention Visualization
|
| 615 |
</p>
|
| 616 |
+
<p style="font-size: 16px; margin-top: 15px; opacity: 0.9;">
|
| 617 |
+
π Performance: Dice 0.8420 β’ IoU 0.7297 β’ Accuracy 98.90% |
|
| 618 |
+
π¬ Research-Grade Interpretability & Robustness
|
| 619 |
</p>
|
| 620 |
</div>
|
| 621 |
""")
|
| 622 |
|
| 623 |
with gr.Row():
|
| 624 |
with gr.Column(scale=1):
|
| 625 |
+
gr.Markdown("### π€ Input & Controls")
|
| 626 |
|
| 627 |
+
with gr.Tab("πΈ Upload Image"):
|
| 628 |
+
image_input = gr.Image(
|
| 629 |
+
label="Brain MRI Scan",
|
| 630 |
+
type="pil",
|
| 631 |
+
sources=["upload", "webcam"],
|
| 632 |
+
height=300
|
| 633 |
+
)
|
| 634 |
+
|
| 635 |
+
with gr.Tab("π² Random Sample"):
|
| 636 |
+
random_image = gr.Image(
|
| 637 |
+
label="Sample Image",
|
| 638 |
+
type="pil",
|
| 639 |
+
height=300,
|
| 640 |
+
interactive=False
|
| 641 |
+
)
|
| 642 |
+
random_ground_truth = gr.Image(
|
| 643 |
+
label="Ground Truth Mask",
|
| 644 |
+
type="pil",
|
| 645 |
+
height=300,
|
| 646 |
+
interactive=False
|
| 647 |
+
)
|
| 648 |
+
load_sample_btn = gr.Button("π² Load Random Sample", variant="secondary", size="lg")
|
| 649 |
+
sample_status = gr.Textbox(label="Sample Status", interactive=False)
|
| 650 |
+
|
| 651 |
+
gr.Markdown("### βοΈ Enhancement Options")
|
| 652 |
+
|
| 653 |
+
use_tta = gr.Checkbox(
|
| 654 |
+
label="π Test-Time Augmentation",
|
| 655 |
+
value=True,
|
| 656 |
+
info="Apply multiple augmentations for robust predictions"
|
| 657 |
+
)
|
| 658 |
+
|
| 659 |
+
show_attention = gr.Checkbox(
|
| 660 |
+
label="π₯ Attention Visualization",
|
| 661 |
+
value=True,
|
| 662 |
+
info="Generate attention heatmaps for interpretability"
|
| 663 |
)
|
| 664 |
|
| 665 |
with gr.Row():
|
| 666 |
+
analyze_btn = gr.Button(
|
| 667 |
+
"π§ Analyze with Enhanced Model",
|
| 668 |
+
variant="primary",
|
| 669 |
+
scale=3,
|
| 670 |
+
size="lg"
|
| 671 |
+
)
|
| 672 |
+
clear_btn = gr.Button("ποΈ Clear All", variant="secondary", scale=1)
|
| 673 |
|
| 674 |
gr.HTML("""
|
| 675 |
+
<div class="feature-box">
|
| 676 |
+
<h4 style="margin-bottom: 15px;">π― Research Innovations</h4>
|
| 677 |
+
<div class="enhancement-badge">Attention Gates</div>
|
| 678 |
+
<div class="enhancement-badge">Test-Time Augmentation</div>
|
| 679 |
+
<div class="enhancement-badge">Interpretability</div>
|
| 680 |
+
<div class="enhancement-badge">Ground Truth Comparison</div>
|
| 681 |
+
<p style="margin-top: 15px; font-size: 14px; opacity: 0.9;">
|
| 682 |
+
Advanced medical AI combining accuracy, robustness, and clinical interpretability
|
| 683 |
+
</p>
|
| 684 |
</div>
|
| 685 |
""")
|
| 686 |
|
| 687 |
with gr.Column(scale=2):
|
| 688 |
+
gr.Markdown("### π Enhanced Analysis Results")
|
| 689 |
|
| 690 |
output_image = gr.Image(
|
| 691 |
+
label="Comprehensive Analysis Visualization",
|
| 692 |
type="pil",
|
| 693 |
+
height=600
|
| 694 |
)
|
| 695 |
|
| 696 |
+
with gr.Accordion("π Detailed Analysis Report", open=True):
|
| 697 |
+
analysis_output = gr.Markdown(
|
| 698 |
+
value="Upload a brain MRI image or load a random sample to test the enhanced Attention U-Net model.",
|
| 699 |
+
elem_id="analysis"
|
| 700 |
+
)
|
| 701 |
+
|
| 702 |
+
# Performance metrics section
|
| 703 |
+
gr.HTML("""
|
| 704 |
+
<div style="margin-top: 40px;">
|
| 705 |
+
<h3 style="text-align: center; color: #4a5568; margin-bottom: 25px;">π Model Performance & Research Contributions</h3>
|
| 706 |
+
<div style="display: grid; grid-template-columns: repeat(auto-fit, minmax(300px, 1fr)); gap: 20px; margin-bottom: 30px;">
|
| 707 |
+
|
| 708 |
+
<div class="metric-card">
|
| 709 |
+
<h4 style="color: white; margin-bottom: 10px;">π― Segmentation Accuracy</h4>
|
| 710 |
+
<div style="font-size: 24px; font-weight: bold; margin: 10px 0;">98.90%</div>
|
| 711 |
+
<p style="font-size: 14px; opacity: 0.9;">Training accuracy on brain tumor dataset</p>
|
| 712 |
+
</div>
|
| 713 |
+
|
| 714 |
+
<div class="metric-card">
|
| 715 |
+
<h4 style="color: white; margin-bottom: 10px;">π Dice Score</h4>
|
| 716 |
+
<div style="font-size: 24px; font-weight: bold; margin: 10px 0;">0.8420</div>
|
| 717 |
+
<p style="font-size: 14px; opacity: 0.9;">Overlap similarity coefficient</p>
|
| 718 |
+
</div>
|
| 719 |
+
|
| 720 |
+
<div class="metric-card">
|
| 721 |
+
<h4 style="color: white; margin-bottom: 10px;">π² IoU Score</h4>
|
| 722 |
+
<div style="font-size: 24px; font-weight: bold; margin: 10px 0;">0.7297</div>
|
| 723 |
+
<p style="font-size: 14px; opacity: 0.9;">Intersection over Union metric</p>
|
| 724 |
+
</div>
|
| 725 |
+
|
| 726 |
+
<div class="metric-card">
|
| 727 |
+
<h4 style="color: white; margin-bottom: 10px;">β‘ Enhancement Features</h4>
|
| 728 |
+
<div style="font-size: 20px; font-weight: bold; margin: 10px 0;">TTA + Attention</div>
|
| 729 |
+
<p style="font-size: 14px; opacity: 0.9;">Advanced robustness & interpretability</p>
|
| 730 |
+
</div>
|
| 731 |
+
|
| 732 |
+
</div>
|
| 733 |
+
</div>
|
| 734 |
+
""")
|
| 735 |
|
| 736 |
+
# Research contributions section
|
| 737 |
gr.HTML("""
|
| 738 |
+
<div style="margin-top: 30px; padding: 30px; background: linear-gradient(135deg, #667eea 0%, #764ba2 100%); border-radius: 20px; color: white;">
|
| 739 |
+
<h3 style="text-align: center; margin-bottom: 25px; color: white;">π Novel Research Contributions</h3>
|
| 740 |
+
|
| 741 |
+
<div style="display: grid; grid-template-columns: 1fr 1fr; gap: 30px; margin-bottom: 20px;">
|
| 742 |
+
|
| 743 |
+
<div>
|
| 744 |
+
<h4 style="margin-bottom: 15px; color: #ffd700;">π 1. Enhanced Boundary Detection</h4>
|
| 745 |
+
<ul style="line-height: 1.8; margin-left: 20px;">
|
| 746 |
+
<li><strong>Problem:</strong> Traditional U-Net passes noisy features through skip connections</li>
|
| 747 |
+
<li><strong>Solution:</strong> Attention gates filter irrelevant encoder features</li>
|
| 748 |
+
<li><strong>Impact:</strong> Cleaner boundaries, reduced false positives</li>
|
| 749 |
+
</ul>
|
| 750 |
+
</div>
|
| 751 |
+
|
| 752 |
+
<div>
|
| 753 |
+
<h4 style="margin-bottom: 15px; color: #ffd700;">π 2. Test-Time Augmentation</h4>
|
| 754 |
+
<ul style="line-height: 1.8; margin-left: 20px;">
|
| 755 |
+
<li><strong>Problem:</strong> Medical datasets are small, MRI scans vary across centers</li>
|
| 756 |
+
<li><strong>Solution:</strong> Multiple augmentations averaged for robust predictions</li>
|
| 757 |
+
<li><strong>Impact:</strong> Improved robustness without retraining</li>
|
| 758 |
+
</ul>
|
| 759 |
+
</div>
|
| 760 |
+
|
| 761 |
+
<div>
|
| 762 |
+
<h4 style="margin-bottom: 15px; color: #ffd700;">π₯ 3. Attention Visualization</h4>
|
| 763 |
+
<ul style="line-height: 1.8; margin-left: 20px;">
|
| 764 |
+
<li><strong>Problem:</strong> Deep networks are "black boxes" for clinicians</li>
|
| 765 |
+
<li><strong>Solution:</strong> Extract attention coefficients as interpretable heatmaps</li>
|
| 766 |
+
<li><strong>Impact:</strong> Build clinical trust through transparency</li>
|
| 767 |
+
</ul>
|
| 768 |
+
</div>
|
| 769 |
+
|
| 770 |
+
<div>
|
| 771 |
+
<h4 style="margin-bottom: 15px; color: #ffd700;">β‘ 4. Efficient Implementation</h4>
|
| 772 |
+
<ul style="line-height: 1.8; margin-left: 20px;">
|
| 773 |
+
<li><strong>Problem:</strong> Complex architectures are hard to deploy</li>
|
| 774 |
+
<li><strong>Solution:</strong> Low-overhead enhancements within existing backbone</li>
|
| 775 |
+
<li><strong>Impact:</strong> Practical for real-world medical workflows</li>
|
| 776 |
+
</ul>
|
| 777 |
+
</div>
|
| 778 |
+
|
| 779 |
+
</div>
|
| 780 |
+
|
| 781 |
+
<div style="text-align: center; padding-top: 20px; border-top: 2px solid rgba(255,255,255,0.3);">
|
| 782 |
+
<p style="font-size: 16px; font-weight: 600; margin-bottom: 10px;">
|
| 783 |
+
π― Research Gap Addressed: Accuracy + Robustness + Interpretability
|
| 784 |
+
</p>
|
| 785 |
+
<p style="font-size: 14px; opacity: 0.9;">
|
| 786 |
+
This combination tackles three major challenges in medical AI with minimal architectural changes
|
| 787 |
+
</p>
|
| 788 |
+
</div>
|
| 789 |
+
</div>
|
| 790 |
+
""")
|
| 791 |
+
|
| 792 |
+
# Dataset and disclaimer section
|
| 793 |
+
gr.HTML("""
|
| 794 |
+
<div style="margin-top: 30px; padding: 25px; background-color: #f7fafc; border-radius: 15px; border-left: 5px solid #667eea;">
|
| 795 |
<div style="display: grid; grid-template-columns: 1fr 1fr; gap: 30px;">
|
| 796 |
+
|
| 797 |
<div>
|
| 798 |
+
<h4 style="color: #667eea; margin-bottom: 15px;">π Dataset Information</h4>
|
| 799 |
+
<p><strong>Source:</strong> Brain Tumor Segmentation (Kaggle)</p>
|
| 800 |
+
<p><strong>Author:</strong> nikhilroxtomar</p>
|
| 801 |
+
<p><strong>Structure:</strong> Images + Ground Truth Masks</p>
|
| 802 |
+
<p><strong>Format:</strong> Grayscale MRI scans</p>
|
| 803 |
+
<p><strong>Use Case:</strong> Medical image segmentation research</p>
|
| 804 |
+
<p><strong>Ground Truth:</strong> Available for metric calculation</p>
|
| 805 |
</div>
|
| 806 |
+
|
| 807 |
<div>
|
| 808 |
+
<h4 style="color: #dc2626; margin-bottom: 15px;">β οΈ Medical Disclaimer</h4>
|
| 809 |
+
<p style="color: #dc2626; font-weight: 600; line-height: 1.5;">
|
| 810 |
+
This enhanced AI system is designed for <strong>research and educational purposes only</strong>.<br><br>
|
| 811 |
+
|
| 812 |
+
While the model includes advanced features like attention visualization and test-time augmentation
|
| 813 |
+
for improved accuracy and interpretability, all results must be validated by qualified medical professionals.<br><br>
|
| 814 |
+
|
| 815 |
+
<strong>Not approved for clinical diagnosis or medical decision making.</strong>
|
| 816 |
</p>
|
| 817 |
</div>
|
| 818 |
+
|
| 819 |
</div>
|
| 820 |
+
|
| 821 |
+
<hr style="margin: 25px 0; border: none; border-top: 2px solid #e2e8f0;">
|
| 822 |
+
|
| 823 |
+
<p style="text-align: center; color: #4a5568; margin: 15px 0; font-weight: 600;">
|
| 824 |
+
π¬ Research-Grade Medical AI β’ Enhanced Interpretability β’ Robust Predictions β’ Ground Truth Validation
|
| 825 |
</p>
|
| 826 |
</div>
|
| 827 |
""")
|
| 828 |
|
| 829 |
# Event handlers
|
| 830 |
+
def analyze_with_ground_truth(image, gt_mask, use_tta, show_attention):
|
| 831 |
+
"""Wrapper function to handle ground truth comparison"""
|
| 832 |
+
return predict_with_enhancements(image, gt_mask, use_tta, show_attention)
|
| 833 |
+
|
| 834 |
+
def analyze_uploaded_image(image, use_tta, show_attention):
|
| 835 |
+
"""Wrapper function for uploaded images without ground truth"""
|
| 836 |
+
return predict_with_enhancements(image, None, use_tta, show_attention)
|
| 837 |
+
|
| 838 |
+
# Button event handlers
|
| 839 |
analyze_btn.click(
|
| 840 |
+
fn=lambda img, rand_img, rand_gt, tta, attention: (
|
| 841 |
+
analyze_with_ground_truth(rand_img, rand_gt, tta, attention)
|
| 842 |
+
if rand_img is not None
|
| 843 |
+
else analyze_uploaded_image(img, tta, attention)
|
| 844 |
+
),
|
| 845 |
+
inputs=[image_input, random_image, random_ground_truth, use_tta, show_attention],
|
| 846 |
outputs=[output_image, analysis_output],
|
| 847 |
show_progress=True
|
| 848 |
)
|
| 849 |
|
| 850 |
+
load_sample_btn.click(
|
| 851 |
+
fn=load_random_sample,
|
| 852 |
+
inputs=[],
|
| 853 |
+
outputs=[random_image, random_ground_truth, sample_status],
|
| 854 |
+
show_progress=True
|
| 855 |
+
)
|
| 856 |
+
|
| 857 |
clear_btn.click(
|
| 858 |
fn=clear_all,
|
| 859 |
inputs=[],
|
| 860 |
+
outputs=[image_input, random_image, random_ground_truth, analysis_output]
|
| 861 |
)
|
| 862 |
|
| 863 |
+
# Auto-load dataset on startup
|
| 864 |
+
gr.HTML("""
|
| 865 |
+
<script>
|
| 866 |
+
document.addEventListener('DOMContentLoaded', function() {
|
| 867 |
+
console.log('Enhanced Brain Tumor Segmentation App Loaded');
|
| 868 |
+
console.log('Features: TTA + Attention Visualization + Ground Truth Comparison');
|
| 869 |
+
});
|
| 870 |
+
</script>
|
| 871 |
+
""")
|
| 872 |
+
|
| 873 |
if __name__ == "__main__":
|
| 874 |
+
print("π Starting Enhanced Brain Tumor Segmentation System...")
|
| 875 |
+
print("π Model Performance: Dice 0.8420, IoU 0.7297, Accuracy 98.90%")
|
| 876 |
+
print("π¬ Research Features: Attention Gates + TTA + Interpretability")
|
| 877 |
+
print("π₯ Auto-downloading dataset and model...")
|
| 878 |
+
|
| 879 |
+
# Initialize dataset download
|
| 880 |
+
print("π Initializing dataset...")
|
| 881 |
+
try:
|
| 882 |
+
dataset_path = download_dataset()
|
| 883 |
+
if dataset_path:
|
| 884 |
+
print(f"β
Dataset ready at: {dataset_path}")
|
| 885 |
+
else:
|
| 886 |
+
print("β οΈ Dataset download failed, random samples unavailable")
|
| 887 |
+
except Exception as e:
|
| 888 |
+
print(f"β οΈ Dataset initialization error: {e}")
|
| 889 |
|
| 890 |
app.launch(
|
| 891 |
server_name="0.0.0.0",
|
| 892 |
server_port=7860,
|
| 893 |
show_error=True,
|
| 894 |
share=False
|
| 895 |
+
)
|