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| """PharmaAgent - inference.py | |
| OpenEnv-compliant inference script. | |
| Mandatory environment variables: | |
| API_BASE_URL The API endpoint for the LLM. | |
| MODEL_NAME The model identifier to use for inference. | |
| HF_TOKEN Your Hugging Face / API key. | |
| ENV_BASE_URL Environment server URL. | |
| Stdout format: | |
| [START] task=<task> env=<benchmark> model=<model> | |
| [STEP] step=<n> action=<action> reward=<0.00> done=<true|false> error=<msg|null> | |
| [END] success=<true|false> steps=<n> score=<0.000> rewards=<r1,r2,...> | |
| """ | |
| import json | |
| import os | |
| from typing import List, Optional | |
| import requests | |
| from dotenv import load_dotenv | |
| from openai import OpenAI | |
| load_dotenv("env", override=False) | |
| # ── Config ───────────────────────────────────────────────────────────────────── | |
| # Matches organiser sample: HF_TOKEN first, then API_KEY | |
| API_KEY = os.getenv("HF_TOKEN") or os.getenv("API_KEY") | |
| API_BASE_URL = os.getenv("API_BASE_URL") or "https://router.huggingface.co/v1" | |
| MODEL_NAME = os.getenv("MODEL_NAME") or "Qwen/Qwen2.5-72B-Instruct" | |
| ENV_BASE_URL = os.getenv("ENV_BASE_URL", "http://localhost:8000") | |
| BENCHMARK = "pharma_agent" | |
| TASKS = ["easy", "medium", "hard"] | |
| MAX_STEPS = 10 | |
| MAX_EPISODE_REWARD = 1.5 | |
| SUCCESS_THRESHOLD = 0.4 | |
| # ── Stdout logging ───────────────────────────────────────────────────────────── | |
| def log_start(task: str, env: str, model: str) -> None: | |
| print(f"[START] task={task} env={env} model={model}", flush=True) | |
| def log_step(step: int, action: str, reward: float, done: bool, error: Optional[str]) -> None: | |
| action_clean = action.replace("\n", " ").replace("\r", "")[:120] | |
| error_val = error if error else "null" | |
| print( | |
| f"[STEP] step={step} action={action_clean} reward={reward:.2f} " | |
| f"done={str(done).lower()} error={error_val}", | |
| flush=True, | |
| ) | |
| def log_end(success: bool, steps: int, score: float, rewards: List[float]) -> None: | |
| rewards_str = ",".join(f"{r:.2f}" for r in rewards) | |
| print( | |
| f"[END] success={str(success).lower()} steps={steps} " | |
| f"score={score:.3f} rewards={rewards_str}", | |
| flush=True, | |
| ) | |
| # ── HTTP helpers for environment ─────────────────────────────────────────────── | |
| def env_reset(task: str) -> dict: | |
| r = requests.post(f"{ENV_BASE_URL}/reset", json={"task": task}, timeout=30) | |
| r.raise_for_status() | |
| return r.json() | |
| def env_step(episode_id: str, action_type: str, value: str) -> dict: | |
| r = requests.post( | |
| f"{ENV_BASE_URL}/step", | |
| json={"action": {"action_type": action_type, "value": value}, "episode_id": episode_id}, | |
| timeout=30, | |
| ) | |
| r.raise_for_status() | |
| return r.json() | |
| # ── System prompt ────────────────────────────────────────────────────────────── | |
| SYSTEM_PROMPT = """You are PharmaAgent, an expert AI clinical pharmacist. Your job is to | |
| diagnose a patient's condition and prescribe ONE safe, indicated drug. | |
| EPISODE FLOW — follow this EXACT ORDER: | |
| 1. DIAGNOSE once — use 3+ medical keywords for the condition. | |
| Examples: | |
| "Type 2 Diabetes Mellitus, hyperglycemia, insulin resistance, glycemic control" | |
| "Hypertension, high blood pressure, antihypertensive, vascular" | |
| "Atrial Fibrillation, arrhythmia, anticoagulation, rate control" | |
| "Hypothyroidism, thyroid hormone deficiency, TSH elevation, levothyroxine" | |
| "Epilepsy, seizures, anticonvulsant, antiepileptic" | |
| "Major Depressive Disorder, depression, antidepressant, SSRI, serotonin" | |
| "Bronchial Asthma, bronchospasm, airway inflammation, beta-2 agonist" | |
| "Rheumatoid Arthritis, autoimmune, synovitis, DMARD, joint inflammation" | |
| "Peptic Ulcer Disease, gastric acid, H. pylori, proton pump inhibitor" | |
| "Chronic Heart Failure, cardiac failure, ejection fraction, diuretic" | |
| 2. CHECK_DDI — ONLY if patient has existing medications. | |
| Check EACH existing med vs your planned drug. Format: "ExistingDrug,PlannedDrug" | |
| If DDI shows MAJOR or CONTRAINDICATED, pick a DIFFERENT drug and check again. | |
| 3. SELECT_DRUG — choose exactly ONE drug from DrugBank matching the diagnosis. | |
| Use exact DrugBank names. Do NOT select contraindicated drugs. | |
| 4. FINALIZE — submit immediately after selecting one drug. | |
| RULES: | |
| - Diagnose EXACTLY ONCE. | |
| - Always check_ddi BEFORE select_drug when existing meds are present. | |
| - Select only ONE drug, then finalize immediately. | |
| - Always respect the valid_options list. | |
| Respond ONLY in JSON (no markdown, no explanation): | |
| {"action_type": "diagnose|select_drug|check_ddi|finalize", "value": "your value"}""" | |
| # ── LLM call — every action goes through the proxy ──────────────────────────── | |
| def get_model_action(client: OpenAI, conversation: List[dict], obs: dict) -> tuple: | |
| """Call LLM for every action decision — required for proxy validation.""" | |
| valid = obs.get("valid_options", []) | |
| symptoms = obs.get("symptoms", []) | |
| existing = obs.get("existing_medications", []) | |
| regimen = obs.get("current_regimen", []) | |
| diagnosis = obs.get("proposed_diagnosis") | |
| feedback = obs.get("feedback", "") | |
| step_count = obs.get("step_count", 0) | |
| # Clear instruction hint for each phase | |
| if "diagnose" in valid: | |
| hint = "DIAGNOSE now. Use 3+ specific clinical keywords for the condition." | |
| elif "check_ddi" in valid and existing and not regimen: | |
| hint = ( | |
| f"Patient has existing medications: {', '.join(existing)}. " | |
| f"You MUST use check_ddi for each one before selecting a drug. " | |
| f"Format value as: 'ExistingDrug,PlannedDrug'" | |
| ) | |
| elif "select_drug" in valid and not regimen: | |
| hint = f"Diagnosis is '{diagnosis}'. SELECT exactly ONE DrugBank drug now." | |
| elif "finalize" in valid: | |
| hint = "Drug selected. FINALIZE the regimen now." | |
| else: | |
| hint = f"Valid actions: {valid}. Choose the most appropriate next step." | |
| user_msg = ( | |
| f"PATIENT STATE:\n" | |
| f"Symptoms: {', '.join(symptoms)}\n" | |
| f"Existing medications: {', '.join(existing) if existing else 'None'}\n" | |
| f"Current regimen: {', '.join(regimen) if regimen else 'None'}\n" | |
| f"Diagnosis so far: {diagnosis or 'Not yet diagnosed'}\n" | |
| f"Last feedback: {feedback[:400]}\n" | |
| f"Valid actions RIGHT NOW: {valid}\n" | |
| f"Steps used: {step_count}/{MAX_STEPS}\n\n" | |
| f"INSTRUCTION: {hint}\n\n" | |
| f'Respond ONLY in JSON: {{"action_type": "...", "value": "..."}}' | |
| ) | |
| conversation.append({"role": "user", "content": user_msg}) | |
| try: | |
| response = client.chat.completions.create( | |
| model=MODEL_NAME, | |
| messages=conversation, | |
| max_tokens=200, | |
| temperature=0.1, | |
| ) | |
| raw = response.choices[0].message.content.strip() | |
| except Exception as exc: | |
| print(f"[DEBUG] Model request failed: {exc}", flush=True) | |
| fallback = valid[0] if valid else "finalize" | |
| conversation.append({"role": "assistant", "content": f"error: {exc}"}) | |
| return fallback, "finalize", f"error: {exc}" | |
| conversation.append({"role": "assistant", "content": raw}) | |
| try: | |
| clean = raw.replace("```json", "").replace("```", "").strip() | |
| data = json.loads(clean) | |
| action_type = data.get("action_type", valid[0] if valid else "finalize") | |
| value = data.get("value", "finalize") | |
| if valid and action_type not in valid: | |
| action_type = valid[0] | |
| return action_type, value, raw | |
| except Exception: | |
| return valid[0] if valid else "finalize", "finalize", raw | |
| # ── Episode runner ───────────────────────────────────────────────────────────── | |
| def run_episode(client: OpenAI, task: str) -> float: | |
| """Run one full episode. Returns normalised score strictly in (0, 1).""" | |
| log_start(task=task, env=BENCHMARK, model=MODEL_NAME) | |
| rewards: List[float] = [] | |
| steps_taken = 0 | |
| score = 0.0 | |
| success = False | |
| try: | |
| reset_data = env_reset(task) | |
| session_id = reset_data.get("session_id", "unknown") | |
| obs = reset_data.get("observation", reset_data) | |
| episode_id = obs.get("metadata", {}).get("episode_id") or session_id | |
| conversation = [{"role": "system", "content": SYSTEM_PROMPT}] | |
| for step in range(1, MAX_STEPS + 1): | |
| if obs.get("done", False): | |
| break | |
| action_type, value, _ = get_model_action(client, conversation, obs) | |
| error = None | |
| try: | |
| result = env_step(episode_id, action_type, value) | |
| step_reward = float(result.get("reward", 0.0)) | |
| done = result.get("done", False) | |
| obs = result.get("observation", {}) | |
| except Exception as e: | |
| step_reward = 0.0 | |
| done = True | |
| error = str(e) | |
| obs = {"done": True} | |
| rewards.append(step_reward) | |
| steps_taken = step | |
| log_step( | |
| step=step, | |
| action=f"{action_type}:{value}", | |
| reward=step_reward, | |
| done=done, | |
| error=error, | |
| ) | |
| if done: | |
| break | |
| total_reward = sum(rewards) | |
| raw_score = total_reward / MAX_EPISODE_REWARD | |
| # Clamp strictly within (0, 1) — 0.0 and 1.0 are not allowed | |
| score = round(min(max(raw_score, 0.001), 0.999), 3) | |
| success = score >= SUCCESS_THRESHOLD | |
| except Exception as e: | |
| rewards = rewards or [0.0] | |
| score = 0.001 # never 0.0 | |
| success = False | |
| log_step(step=steps_taken + 1, action="error", reward=0.0, done=True, error=str(e)) | |
| finally: | |
| log_end(success=success, steps=steps_taken, score=score, rewards=rewards) | |
| return score | |
| # ── Grader ───────────────────────────────────────────────────────────────────── | |
| def grader(task_scores: dict) -> float: | |
| weights = {"easy": 0.2, "medium": 0.3, "hard": 0.5} | |
| final = sum(task_scores.get(t, 0.0) * w for t, w in weights.items()) | |
| # Clamp strictly within (0, 1) | |
| return round(min(max(final, 0.001), 0.999), 4) | |
| # ── Main ─────────────────────────────────────────────────────────────────────── | |
| def main(): | |
| if not API_KEY: | |
| print("API_KEY / HF_TOKEN not set. Must be injected by hackathon or set for local dev.", flush=True) | |
| return | |
| client = OpenAI(base_url=API_BASE_URL, api_key=API_KEY) | |
| # Verify environment is live | |
| try: | |
| r = requests.get(f"{ENV_BASE_URL}/health", timeout=10) | |
| if r.status_code != 200: | |
| print(f"Environment returned status {r.status_code}.", flush=True) | |
| return | |
| except Exception as e: | |
| print(f"Cannot reach environment: {e}", flush=True) | |
| return | |
| task_scores = {} | |
| for task in TASKS: | |
| print(f"\n{'='*50}", flush=True) | |
| print(f"Running task: {task.upper()}", flush=True) | |
| score = run_episode(client, task) | |
| task_scores[task] = score | |
| print(f"Task '{task}' score: {score:.4f}", flush=True) | |
| final_score = grader(task_scores) | |
| print(f"\n{'='*50}", flush=True) | |
| print(f"FINAL GRADER SCORE: {final_score:.4f} / 1.0000", flush=True) | |
| print(f"Task scores: {task_scores}", flush=True) | |
| return final_score | |
| if __name__ == "__main__": | |
| main() | |