update requirements

physics_mcp/mcp_output/requirements.txt

@@ -1,18 +1,29 @@
 fastmcp>=0.1.0
 pydantic>=2.0.0
-torch>=2.4.0
+
+# Core dependencies (from nvidia-physicsnemo pyproject.toml)
+certifi>=2023.7.22
+fsspec>=2023.1.0
 numpy>=1.22.4
-scipy>=1.9.0
 onnx>=1.14.0
+packaging>=24.2
+s3fs>=2023.5.0
+setuptools>=77.0.3
+timm>=1.0.0
+torch>=2.4.0
+tqdm>=4.60.0
+treelib>=1.2.5
+xarray>=2023.1.0
+zarr>=2.14.2
+
+# Additional dependencies (used by physicsnemo modules)
+scipy>=1.9.0
+
+# Additional packages for MCP service
 tritonclient
 matplotlib
 pandas
 pyyaml>=6.0
-tqdm>=4.60.0
-xarray>=2023.1.0
-zarr>=2.14.2
-s3fs>=2023.5.0
-timm>=1.0.0
 
 # Optional Dependencies (can be uncommented as needed)
 # cuml>=24.0.0  (requires RAPIDS conda channel - use scipy fallback instead)
@@ -20,6 +31,8 @@ timm>=1.0.0
 # mlflow>=2.1.1
 # dgl
 # pyg
+# torch-harmonics>=0.6.5
+# tensorly>=0.8.1
 # vtk>=9.2.6
 # netCDF4>=1.6.3
 # h5py>=3.7.0