Update dash_plotly_QC_scRNA.py

dash_plotly_QC_scRNA.py

@@ -130,108 +130,57 @@ tab1_content = html.Div([
 tab2_content = html.Div([
     html.Div([
             html.Label("S-cycle genes"),
-            dcc.Dropdown(id='dpdn3', value="Cdc45", multi=False,
+            dcc.Dropdown(id='dpdn3', value="MCM5", multi=False,
                  options=[
-    "Cdc45",
-    "Uhrf1",
-    "Mcm2",
-    "Slbp",
-    "Mcm5",
-    "Pola1",
-    "Gmnn",
-    "Cdc6",
-    "Rrm2",
-    "Atad2",
-    "Dscc1",
-    "Mcm4",
-    "Chaf1b",
-    "Rfc2",
-    "Msh2",
-    "Fen1",
-    "Hells",
-    "Prim1",
-    "Tyms",
-    "Mcm6",
-    "Wdr76",
-    "Rad51",
-    "Pcna",
-    "Ccne2",
-    "Casp8ap2",
-    "Usp1",
-    "Nasp",
-    "Rpa2",
-    "Ung",
-    "Rad51ap1",
-    "Blm",
-    "Pold3",
-    "Rrm1",
-    "Cenpu",
-    "Gins2",
-    "Tipin",
-    "Brip1",
-    "Dtl",
-    "Exo1",
-    "Ubr7",
-    "Clspn",
-    "E2f8",
-    "Cdca7"
+    "MCM5",
+    "PCNA",
+    "TYMS",
+    "FEN1",
+    "MCM2",
+    "MCM4",
+    "RRM1",
+    "UNG",
+    "GINS2",
+    "MCM6",
+    "CDCA7",
+    "DTL",
+    "PRIM1",
+    "UHRF1",
+    "MLF1IP",
+    "HELLS",
+    "RFC2",
+    "RPA2",
+    "NASP",
+    "RAD51AP1",
+    "GMNN",
+    "WDR76",
+    "SLBP",
+    "CCNE2",
+    "UBR7",
+    "POLD3",
+    "MSH2",
+    "ATAD2",
+    "RAD51",
+    "RRM2",
+    "CDC45",
+    "CDC6",
+    "EXO1",
+    "TIPIN",
+    "DSCC1",
+    "BLM",
+    "CASP8AP2",
+    "USP1",
+    "CLSPN",
+    "POLA1",
+    "CHAF1B",
+    "BRIP1",
+    "E2F8"
 ]),
             html.Label("G2M-cycle genes"),
-            dcc.Dropdown(id='dpdn4', value="Top2a", multi=False,
+            dcc.Dropdown(id='dpdn4', value="TOP2A", multi=False,
                  options=[
-    "Ube2c",
-    "Lbr",
-    "Ctcf",
-    "Cdc20",
-    "Cbx5",
-    "Kif11",
-    "Anp32e",
-    "Birc5",
-    "Cdk1",
-    "Tmpo",
-    "Hmmr",
-    "Pimreg",
-    "Aurkb",
-    "Top2a",
-    "Gtse1",
-    "Rangap1",
-    "Cdca3",
-    "Ndc80",
-    "Kif20b",
-    "Cenpf",
-    "Nek2",
-    "Nuf2",
-    "Nusap1",
-    "Bub1",
-    "Tpx2",
-    "Aurka",
-    "Ect2",
-    "Cks1b",
-    "Kif2c",
-    "Cdca8",
-    "Cenpa",
-    "Mki67",
-    "Ccnb2",
-    "Kif23",
-    "Smc4",
-    "G2e3",
-    "Tubb4b",
-    "Anln",
-    "Tacc3",
-    "Dlgap5",
-    "Ckap2",
-    "Ncapd2",
-    "Ttk",
-    "Ckap5",
-    "Cdc25c",
-    "Hjurp",
-    "Cenpe",
-    "Ckap2l",
-    "Cdca2",
-    "Hmgb2",
-    "Cks2",
-    "Psrc1",
-    "Gas2l3"
+    'HMGB2', 'CDK1', 'NUSAP1', 'UBE2C', 'BIRC5', 'TPX2', 'TOP2A', 'NDC80', 'CKS2', 'NUF2', 'CKS1B', 'MKI67', 'TMPO', 'CENPF', 'TACC3', 'FAM64A', 'SMC4', 'CCNB2', 'CKAP2L', 'CKAP2', 'AURKB', 'BUB1', 'KIF11', 'ANP32E', 'TUBB4B', 'GTSE1', 'KIF20B', 'HJURP', 'CDCA3', 'HN1', 'CDC20', 'TTK', 'CDC25C', 'KIF2C', 'RANGAP1', 'NCAPD2', 'DLGAP5', 'CDCA2', 'CDCA8', 'ECT2', 'KIF23', 'HMMR', 'AURKA', 'PSRC1', 'ANLN', 'LBR', 'CKAP5', 
+                     'CENPE', 'CTCF', 'NEK2', 'G2E3', 'GAS2L3', 'CBX5', 'CENPA'
 ]),
     ]),
     html.Div([
@@ -258,18 +207,8 @@ tab3_content = html.Div([
             dcc.Dropdown(id='dpdn6', value="n_genes_by_counts", multi=False,
                  options=df.columns),
             html.Label("Multi gene"),
-            dcc.Dropdown(id='dpdn7', value=["Cdc45","Mcm2","Mcm5"], multi=True,
-                 options=[
-    "Cdc45",
-    "Uhrf1",
-    "Mcm2",
-    "Slbp",
-    "Mcm5",
-    "Pola1",
-    "Gmnn",
-    "Cdc6",
-    "Rrm2",
-    "Atad2"]),
+            dcc.Dropdown(id='dpdn7', value=["MCM5","TOP2A","PCNA"], multi=True,
+                 options=df.columns),
     ]),
     html.Div([
         dcc.Graph(id='scatter-plot-9', figure={}, className='four columns',config=config_fig)