Update dash_plotly_QC_scRNA.py

dash_plotly_QC_scRNA.py

@@ -26,14 +26,6 @@ mountpount=os.environ['AZURE_MOUNT_POINT'],
 AZURE_STORAGE_ACCESS_KEY=os.getenv('AZURE_STORAGE_ACCESS_KEY')
 AZURE_STORAGE_ACCOUNT=os.getenv('AZURE_STORAGE_ACCOUNT')
 
-filepath = 'az://dataliu/Aniridia_SC_liu_unfiltered_umap_raw.parquet'
-
-storage_options={'account_name': AZURE_STORAGE_ACCOUNT, 'account_key': AZURE_STORAGE_ACCESS_KEY,'anon': False}
-#azfs = AzureBlobFileSystem(**storage_options )
-
-df = pl.read_parquet(filepath,storage_options=storage_options)
-#abfs = AzureBlobFileSystem(account_name=accountname,account_key=accountkey)
-
 # Load in config file
 config_path = "./data/config.yaml"
 
@@ -44,12 +36,20 @@ def read_config(filename):
     return config
 
 config = read_config(config_path)
-#path_parquet = config.get("path_parquet")
+path_parquet = config.get("path_parquet")
 conditions = config.get("conditions")
 col_features = config.get("col_features")
 col_counts = config.get("col_counts")
 col_mt = config.get("col_mt")
 
+filepath = f('az://{path_parquet}')
+
+storage_options={'account_name': AZURE_STORAGE_ACCOUNT, 'account_key': AZURE_STORAGE_ACCESS_KEY,'anon': False}
+#azfs = AzureBlobFileSystem(**storage_options )
+
+df = pl.read_parquet(filepath,storage_options=storage_options)
+#abfs = AzureBlobFileSystem(account_name=accountname,account_key=accountkey)
+
 #df = df.rename({"__index_level_0__": "Unnamed: 0"})
 
 # Setup the app