Update dash_plotly_QC_scRNA.py
Browse files- dash_plotly_QC_scRNA.py +20 -17
dash_plotly_QC_scRNA.py
CHANGED
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@@ -59,6 +59,25 @@ tab0_content = html.Div([
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options=["corg/10xflexcorg_umap_clusres","d1011/10xflexd1011_umap_clusres"])
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])
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# Loads in the conditions specified in the yaml file
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# Note: Future version perhaps all values from a column in the dataframe of the parquet file
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@@ -302,23 +321,7 @@ def update_slider_values(min_1, max_1, min_2, max_2, min_3, max_3):
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Input(component_id='range-slider-3', component_property='value')
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)
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def update_graph_and_pie_chart(
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filepath = f"az://data10xflex/{dataset_chosen}"
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df = pl.read_parquet(filepath,storage_options=storage_options)
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min_value = df[col_features].min()
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max_value = df[col_features].max()
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min_value_2 = df[col_counts].min()
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min_value_2 = round(min_value_2)
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max_value_2 = df[col_counts].max()
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max_value_2 = round(max_value_2)
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min_value_3 = df[col_mt].min()
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min_value_3 = round(min_value_3, 1)
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max_value_3 = df[col_mt].max()
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max_value_3 = round(max_value_3, 1)
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batch_chosen = df[col_chosen].unique().to_list()
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dff = df.filter(
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(pl.col(col_chosen).cast(str).is_in(batch_chosen)) &
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options=["corg/10xflexcorg_umap_clusres","d1011/10xflexd1011_umap_clusres"])
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])
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def update_dataset(dataset_chosen): #batch_chosen,
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filepath = f"az://data10xflex/{dataset_chosen}"
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df = pl.read_parquet(filepath,storage_options=storage_options)
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min_value = df[col_features].min()
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max_value = df[col_features].max()
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min_value_2 = df[col_counts].min()
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min_value_2 = round(min_value_2)
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max_value_2 = df[col_counts].max()
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max_value_2 = round(max_value_2)
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min_value_3 = df[col_mt].min()
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min_value_3 = round(min_value_3, 1)
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max_value_3 = df[col_mt].max()
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max_value_3 = round(max_value_3, 1)
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return df, min_value, max_value, min_value_2, max_value_2, min_value_3, max_value_3
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# Loads in the conditions specified in the yaml file
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# Note: Future version perhaps all values from a column in the dataframe of the parquet file
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Input(component_id='range-slider-3', component_property='value')
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)
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def update_graph_and_pie_chart(col_chosen, s_chosen, g2m_chosen, condition1_chosen, condition2_chosen, condition3_chosen, range_value_1, range_value_2, range_value_3): #batch_chosen,
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batch_chosen = df[col_chosen].unique().to_list()
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dff = df.filter(
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(pl.col(col_chosen).cast(str).is_in(batch_chosen)) &
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