Spaces:
Sleeping
Sleeping
File size: 27,157 Bytes
68f7345 c7d0e19 68f7345 c7d0e19 68f7345 c7d0e19 68f7345 c7d0e19 68f7345 c7d0e19 68f7345 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 | # Lexsi DS Agent β Developer / KT Guide
A code-level companion to [`DSAGENT_OVERVIEW.md`](DSAGENT_OVERVIEW.md) (which is
the what/why). This is the **how**: file map, control flow, the contracts you'll
touch, configuration, and the full benchmark-running mechanics. Read the overview
first, then this.
---
## 1. Mental model in one paragraph
One **question** β one `AgentLoop.run()` β a **ReAct loop**: build a system prompt
(framing + active-dataset summary + tool catalog), ask the LLM for a JSON decision
(`{"thought","tool","args"}` or `{"thought","final_answer"}`), validate args with
the tool's pydantic schema, run the tool against a shared `AgentContext`, append the
observation to history, repeat until a final answer or the step budget. Tools read
and write a shared `ctx.cache` scratchpad. The data substrate is always **DuckDB**;
tabular ML runs on **remote Lexsi pods** via the SDK. The loop is generic β it has
no opinion on which tools to call.
---
## 2. Repo layout (code-oriented)
```
lexsi_ds/
agent/
loop.py AgentLoop.run() β the ReAct orchestrator (start here)
context.py AgentContext, DatasetHandle, TableInfo, ColumnInfo
prompts.py PLANNER_SYSTEM, render_tool_catalog, tool-selector (intent routing)
datasource.py DuckDB handle loaders + multi-DB materialization + DB cache
tools/
base.py Tool / ToolSpec / ToolResult contract (the interface)
__init__.py REGISTRY: dict[str, Tool] (30 tools)
<name>.py one tool per file, each exports `TOOL: Tool`
_tabular_common.py shared helpers for the model-lifecycle tools
(resolve_tab_project, active_model_name, df_records, β¦)
kg_index.py embedding/lexical index over the PKDD knowledge graph
table_index.py embedding index over table schemas (schema linking, big DBs)
session.py SessionContext + multi-turn merge
turn_classifier.py classify a turn: new / refine / abandon
reference_resolver.py resolve "it/that/those" against prior turns
samples.py curated demo questions (by_id, SAMPLES) β UI chips + tests
llm/client.py LLMClient protocol, StubLLMClient, LexsiTextClient, cache, timeout
schema/
raw.py PKDD DDL introspection (introspect())
context_graph.py ContextGraph β the banking knowledge graph
data/loader.py PKDD TSVs -> artifacts/financial.duckdb
paths.py DUCKDB_PATH, ARTIFACTS_DIR, etc.
app/gradio_app.py the UI (build_ui(); demo.launch on GRADIO_PORT)
benchmark/
dab/
adapter.py parse a DAB dataset -> DatasetHandle + tasks (+ DB cache key)
runner.py run agent per DAB task, score Pass@1 via the task's validate.py
DataAgentBench/ the (gitignored) upstream checkout + DB files
pkdd_runner.py run agent over bench/pkdd/questions.yaml, auto-score
datagen/ template pipeline that GENERATES bench/pkdd/*.yaml
bench/pkdd/
questions.yaml 40 single-turn bench items (analytic/predictive/adversarial)
sessions.yaml multi-turn sessions
p2_feature_engineering.yaml 10 feature-eng items (separate `assertions` schema)
benchmark/fixtures/pkdd_seed.duckdb pinned PKDD snapshot the bench scores against
scripts/
repro_tabicl/ TabICL inference + per-case XAI failure repro
repro_model_lifecycle/ model-lifecycle SDK probe harness (self-contained):
data/ the PKDD CSVs (local copy)
repro_model_lifecycle.py TabICL-first (clean)
repro_model_lifecycle_xgboost_first.py XGBoost-first (#05-013 cascade repro)
tests/ pytest suite (test_b_tools, test_v1_multiturn, test_dab_*, β¦)
docs/ design + results + this guide
```
---
## 3. The run lifecycle ([loop.py](../lexsi_ds/agent/loop.py))
`AgentLoop(ctx, registry=REGISTRY, max_steps=18).run(question) -> AgentRun`
```
run(question):
1. (multi-turn) classify_turn() -> new/refine/abandon; resolve_reference()
- "abandon" short-circuits with a polite answer.
2. ctx.cache["question"] = question
3. system = _render_system(...) # built ONCE per run, re-sent every step
- _select_tools(question): LLM intent classifier -> render only relevant tool group(s)
- render_dataset_block(ctx) + render_tool_catalog(tools) + PLANNER_SYSTEM
4. history = ["USER QUESTION: ..."]
5. while n < max_steps:
user_msg = "\n\n".join(history) + "You have {max_steps-n} tool calls left..."
decision = parse(ctx.llm.complete(system, user_msg))
if "final_answer": finalize + return
tool = registry.get(decision["tool"])
result = _call_tool(tool, decision["args"]) # pydantic-validate then tool.run()
history.append("TOOL CALL ...\nOBSERVATION: " + result.summary[:1500])
# anti-loop: same tool fails 2x in a row -> inject "[LOOP GUARD] re-plan" directive
if result.meta.get("pause_for_user"): return (clarify pause) # interactive only
6. budget exhausted -> _force_final(): ask once for a final answer
```
Key methods: `run`, `_render_system`, `_select_tools`, `_call_tool`, `_force_final`.
Dispatch **always uses the full `self.registry`**; the tool selector only narrows
what the planner *sees* in the prompt, never what it can call.
Data classes:
- `AgentRun` β `run_id, question, dataset_id, steps[], final_answer, ok, error, pending_clarification, system_prompt`.
- `Step` β `n, thought, tool, args, result(ToolResult), raw_llm_text, latency_s, prompt`. The full per-turn user message lives on each Step (so trajectories are reproducible).
---
## 4. Core data structures ([context.py](../lexsi_ds/agent/context.py))
**`AgentContext`** β built once per run, passed to every tool:
- `dataset: DatasetHandle`, `run_id`
- `org / text_project / tab_project / tab_projects` β Lexsi SDK handles (may be None offline)
- `llm` β an `LLMClient`
- `cache: dict` β run-scoped scratchpad (see Β§6)
- `session` β optional `SessionContext` (multi-turn)
- `interactive: bool` β True in the UI (clarify pauses); False in bench/headless (clarify falls back to its `default`)
- `.duck(read_only=None)` β open a DuckDB connection on `dataset.duckdb_path` (read-only for bundled, writable otherwise)
**`DatasetHandle`** β `id, kind, duckdb_path, tables: list[TableInfo], connector_id, kg`. `kind β {bundled, upload, connector, attached}`. Everything funnels through `ctx.duck()` β `duckdb_path`, so "switch dataset" = build a new handle and assign `ctx.dataset`.
**`TableInfo`** = `name, columns: list[ColumnInfo], n_rows, comment`. **`ColumnInfo`** = `name, dtype, comment, sample` (the `sample` value is the per-column representative value the planner sees in the schema β populated at describe time).
---
## 5. The tool contract β how to add a tool ([tools/base.py](../lexsi_ds/agent/tools/base.py))
A tool is any object with `.spec: ToolSpec` and `.run(args, ctx) -> ToolResult`.
```python
# lexsi_ds/agent/tools/my_tool.py
from pydantic import BaseModel, Field
from lexsi_ds.agent.context import AgentContext
from lexsi_ds.agent.tools.base import Tool, ToolResult, ToolSpec
class MyToolArgs(BaseModel):
table_or_label: str = Field(..., description="...") # match sibling arg names!
def _run(args: MyToolArgs, ctx: AgentContext) -> ToolResult:
con = ctx.duck()
...
return ToolResult(ok=True, summary="short text the LLM sees (<~200 tok)",
payload={"dataframe": df}) # rich data; LLM never sees it
class _MyTool:
spec = ToolSpec(name="my_tool", description="...(LLM sees verbatim)...",
args_schema=MyToolArgs, returns="what the observation looks like")
def run(self, args, ctx): return _run(args, ctx)
TOOL: Tool = _MyTool()
```
Then register it: add `from .my_tool import TOOL as my_tool_tool` and an entry in
`REGISTRY` in [tools/__init__.py](../lexsi_ds/agent/tools/__init__.py). If it fits an
intent group, add it to `_TOOL_GROUPS` in [prompts.py](../lexsi_ds/agent/prompts.py)
so the tool selector surfaces it (see Β§8).
Contract notes:
- `summary` is the **only** thing the LLM sees; `payload` is for the UI / downstream tools.
- Return `ok=False` with an **actionable** `summary` on expected failures β the planner reads it and re-plans. Unexpected exceptions propagate; the loop wraps them.
- **Arg-name convention:** sibling tools that take a source use `table_or_label`. Match it (or alias via pydantic `AliasChoices`) β mismatches show up as `validation_error` and waste planner steps (this bit us; see `transform_column`).
- Args are validated in `_call_tool` via `tool.spec.args_schema.model_validate(raw_args)`.
---
## 6. The cache contract (`ctx.cache`)
Run-scoped (session-scoped in multi-turn). Producers β consumers, by key:
| Key | Producer | Consumer |
|---|---|---|
| `question` | loop | tool selector |
| `tool_intents::<q>` | `_select_tools` | (memoize the intent classification) |
| `sql_result:<label>` | `run_sql` | profile_data, sample_rows, transform_column, predict |
| `last_sql_result`, `last_sql` | `run_sql` | PKDD scorer, downstream |
| `profile:<label>` | `profile_data` | train_tabular_model, dq checks |
| `last_train_columns` | `train_tabular_model` | predict (schema alignment) |
| `last_predictions`, `last_predict_tag`, `last_model_id` | `predict` | explain_prediction, evaluate_predictions |
| `last_eval` | `evaluate_predictions` | summarize_result |
When adding a tool that hands data downstream, write a documented key here.
---
## 7. Data layer ([datasource.py](../lexsi_ds/agent/datasource.py))
Handle loaders (each returns a `DatasetHandle`):
- `load_pkdd_handle()` β bundled PKDD (`DUCKDB_PATH = artifacts/financial.duckdb`), KG attached.
- `load_upload_handle(spec)` β CSV/Parquet β per-session DuckDB.
- `load_s3_connector_handle(spec)` β `read_parquet(s3://β¦)` views.
- `load_attached_handle(specs, *, dataset_id, target_path=None)` β fold heterogeneous DBs into **one** DuckDB.
- `load_postgres_connector_handle` / `load_mongo_connector_handle` β live DB connectors (reuse the materialize helpers).
**Multi-DB fold-in** (`_build_attached_duckdb`): each source becomes `<alias>_<table>`:
- sqlite/duckdb β `ATTACH` + `CREATE TABLE AS SELECT` (`_materialize_file_db`)
- postgres β restore the `.sql` dump into an embedded **pgserver**, copy via postgres scanner (`_materialize_postgres_dump`); tears down the `pgdata` dir after.
- mongo β read `.bson` server-lessly, flatten nested β JSON text (`_materialize_mongo_dump`).
**Schema sampling:** `_describe_tables` β `_column_samples` runs one `SELECT * LIMIT 5` per table and stores a representative value on `ColumnInfo.sample`. This is what lets the planner see "Date: VARCHAR sample='31 Dec 1986, 00:00'" and parse with `TRY_CAST`/`strptime` instead of naive casts.
**DB cache (build-once)** β `load_attached_handle(target_path=...)`: if the master exists at `target_path`, reuse it; else materialize once (atomic `.building` β rename). Each run gets an isolated **working copy** (`shutil.copyfile` β `artifacts/sessions/attach_*.duckdb`) so agent writes never mutate the master. The DAB adapter computes the master path + content-fingerprint (see Β§13).
Session files live in `artifacts/sessions/` via `_new_session_db()`; the DAB runner deletes the per-dataset working copy when done (`_cleanup_working_copy`).
---
## 8. Prompts + the token-lean tool selector ([prompts.py](../lexsi_ds/agent/prompts.py))
- `PLANNER_SYSTEM` β the ReAct framing + hard rules + JSON response format.
- `render_tool_catalog(registry)` β renders each tool as `## name` + description +
**one-line arg signature** (`_compact_args`, not full JSON Schema β ~64% fewer tokens)
+ Returns. Enums/Literals keep their choices.
- `render_dataset_block(ctx)` / `render_session_context(...)` β dataset summary + multi-turn prefix.
- **Tool selector** (gated, LLM-based): `_select_tools` (in loop.py) calls a one-shot
classifier (`TOOL_INTENT_SYSTEM`) once per run, cached. `parse_tool_intents` β
`subset_for_intents(intents, registry)` renders **core tools + the union of matched
groups** (`_CORE_TOOLS`, `_TOOL_GROUPS`); ambiguous/multi-intent β full catalog. Toggle
with `LEXSI_TOOL_SELECTOR=0`. Dispatch is always against the full registry.
---
## 9. LLM client ([llm/client.py](../lexsi_ds/llm/client.py))
- `LLMClient` protocol: `.complete(system, user) -> LLMResult(text, raw)`.
- Implementations: `StubLLMClient` (offline sentinels), `EchoGoldLLMClient` (tests),
`LexsiTextClient` (real; `LexsiTextClient.from_env()`), built via `factory("lexsi"|"stub")`.
- **Caching:** in-memory LRU (`LEXSI_LLM_CACHE_MAX`, default 256) keyed on
`(model, provider, max_tokens, system, user)`; optional **disk** layer when
`LEXSI_LLM_CACHE_DIR` is set (the bench runners set it β replays across runs). Disable
with `LEXSI_LLM_CACHE=0`.
- **Timeout/retry (important):** every gateway call goes through `_call_with_timeout`
(daemon-thread guard, `LEXSI_LLM_TIMEOUT_S` default 180, `LEXSI_LLM_RETRIES` default 1).
Without it a stalled gateway request freezes the whole run β this was a real incident.
- **Model-family handling:** GPT-5 / o-series reject `max_tokens`; the client POSTs
directly with `max_completion_tokens` (`_post_chat_with_completion_tokens`).
---
## 10. Multi-turn
`SessionContext` ([session.py](../lexsi_ds/agent/session.py)) seeds `ctx.cache` from the
session at run start and lifts changes back at the end. `classify_turn`
([turn_classifier.py](../lexsi_ds/agent/turn_classifier.py)) labels each turn
new/refine/abandon; `resolve` ([reference_resolver.py](../lexsi_ds/agent/reference_resolver.py))
resolves anaphora and hands the planner an explicit reference.
---
## 11. Configuration (environment variables)
**Required for the real LLM path:** `SDK_ACCESS_TOKEN`, `LEXSI_ORG_NAME`,
`LEXSI_WORKSPACE_NAME`, `LEXSI_TEXT_PROJECT_NAME`, `LEXSI_TEXT_PROVIDER`,
`LEXSI_TEXT_MODEL`. Optional: `LEXSI_TEXT_PROVIDER_API_KEY`, `LEXSI_TEXT_MAX_TOKENS`.
**Tabular:** `LEXSI_TABULAR_PROJECT_NAME` (per-run projects created on train, so usually unset).
| Var | Default | Purpose |
|---|---|---|
| `LEXSI_TOOL_SELECTOR` | `1` | gate the LLM tool selector (`0` = always full catalog) |
| `LEXSI_LLM_TIMEOUT_S` | `180` | hard timeout per gateway call |
| `LEXSI_LLM_RETRIES` | `1` | retries on timeout/failure |
| `LEXSI_LLM_CACHE` | `1` | in-memory LLM cache on/off |
| `LEXSI_LLM_CACHE_DIR` | β | enable on-disk LLM cache (bench runners set this) |
| `LEXSI_LLM_CACHE_MAX` | `256` | LRU size |
| `DUCKDB_PATH` | `artifacts/financial.duckdb` | bundled PKDD DB |
| `DAB_ROOT` | `benchmark/dab/DataAgentBench` | DAB checkout |
| `GRADIO_PORT` | `7860` (7850 in Docker) | UI port |
| `LEXSI_UI_RUN_TIMEOUT_S`, `LEXSI_UI_HEARTBEAT_S`, `LEXSI_UI_SSR` | β | UI tuning |
| `LEXSI_TRAIN_TIMEOUT_S`, `LEXSI_PREDICT_TIMEOUT_S`, `LEXSI_XAI_BUDGET_S` | β | Lexsi pod waits |
| `LEXSI_ROUNDTRIP_MODEL/_PROVIDER/_DISABLE` | β | datagen Stage-4 back-translator |
(Connector creds β `PG_*`, `MONGO_URI`, `AWS_*`, `MYSQL_*` β are read by the live `connect_datalake` paths.)
---
## 12. Local dev setup
```bash
# deps (extras: lexsi, ui, dev, embeddings, connectors)
uv sync --extra lexsi --extra ui --extra dev --extra embeddings --extra connectors
# bootstrap the bundled PKDD DuckDB (one-time, ~10s)
uv run python -m lexsi_ds.data.loader
# drive the agent from Python (offline stub LLM)
uv run python -c "
from lexsi_ds.agent import AgentContext, AgentLoop
from lexsi_ds.agent.datasource import load_pkdd_handle
from lexsi_ds.llm.client import factory
ctx = AgentContext(dataset=load_pkdd_handle(), run_id='local', llm=factory('stub'))
print(AgentLoop(ctx=ctx).run('Top 5 districts by number of accounts.').final_answer)
"
# UI
uv run python -m app.gradio_app # http://localhost:7860
# tests (LLM-gated ones skip without the Lexsi env)
uv run pytest -q
```
---
## 13. Benchmark mechanisms (all of them)
There are **three** harnesses. All write full trajectories so failures are debuggable.
### 13a. DataAgentBench (external; Pass@1) β `benchmark/dab/`
What it is: 17 datasets across sqlite/duckdb/postgres/mongo; each task ships a
question + `ground_truth.csv` + its own `validate.py`. We score **Pass@1** by calling
that `validate.py` on the agent's final answer.
Code:
- [adapter.py](../benchmark/dab/adapter.py): `load_dataset(dir)` β `DabDataset`
(parses `db_config.yaml` into `AttachSpec`s via `parse_db_config`, loads each task's
`validate.py` via `_load_validate`). `build_handle(dataset, cache_dir=...)` β
`load_attached_handle` with a content-keyed master path
(`<cache_dir>/<dataset>__<_fingerprint>.duckdb`).
- [runner.py](../benchmark/dab/runner.py): `main` β `run_dataset` (builds the handle
once per dataset, loops tasks) β `run_task` (composes the question with the DAB
description + table-name mapping, runs `AgentLoop`, calls `validate`). DB working
copy cleaned per dataset (`_cleanup_working_copy`).
Setup + run:
```bash
git clone https://github.com/ucbepic/DataAgentBench benchmark/dab/DataAgentBench
uv sync --extra connectors # needed for the postgres/mongo datasets
export SDK_ACCESS_TOKEN=β¦ LEXSI_WORKSPACE_NAME=β¦ LEXSI_TEXT_PROJECT_NAME=β¦ # + org/model/provider
# one dataset / one task / sweep all
uv run python -m benchmark.dab.runner --dataset DEPS_DEV_V1 --llm lexsi
uv run python -m benchmark.dab.runner --dataset DEPS_DEV_V1 --query query1 --llm lexsi
uv run python -m benchmark.dab.runner --all --llm lexsi
# the sqlite/duckdb "core" (5 datasets / 17 tasks, no connectors extra), real Pass@1
uv run python -m benchmark.dab.runner --all --db-types sqlite,duckdb --llm lexsi \
--iterations 3 --max-steps 20 --log-dir artifacts/dab_runs/run1
```
Flags: `--dataset/--all`, `--db-types t1,t2` (filter `--all`), `--query`,
`--iterations`, `--max-steps` (default 12), `--use-hints`, `--log-dir`,
`--db-cache-dir`/`--no-db-cache`, `--llm-cache-dir`/`--no-llm-cache`, `-v`.
Caching (two layers, both speed re-runs):
- **DB cache** `artifacts/dab_dbs/` β each dataset's fold-in materialized once; reused across runs; per-run working copy auto-deleted.
- **LLM disk cache** `artifacts/llm_cache/` β gateway responses keyed on the prompt; a failed sweep resumes cheaply.
Outputs: per-task trace JSON in `--log-dir` (`<dataset>_<query>_iter<N>.json` β full
steps, prompts, raw LLM output, payloads, validator verdict) + a console scoreboard
(per-dataset pass counts, wall vs agent time, LLM reuse). Latest results writeup:
[`dab_results_v1.md`](dab_results_v1.md); integration detail: [`dab_integration.md`](dab_integration.md).
### 13b. PKDD-Curated (internal) β `benchmark/pkdd_runner.py`
What it is: our own suite over the bundled PKDD dataset, scored against the **pinned
fixture** `benchmark/fixtures/pkdd_seed.duckdb`. Question schema in
[`benchmark/datagen/types.py`](../benchmark/datagen/types.py) (`Row`); the live set is
[`bench/pkdd/questions.yaml`](../bench/pkdd/questions.yaml) (40 items: analytic,
predictive, adversarial).
Scoring ([pkdd_runner.py](../benchmark/pkdd_runner.py), by `scoring_rule`):
- `row_set_equality` (analytic) β `_score_row_set`: agent's `last_sql_result` vs
`gold_sql` executed on the fixture, as a multiset of sorted-value rows (column-rename
tolerant; lenient scalar fallback).
- `exact_match` (numeric) β `_score_numeric`: reference value within `tolerance`.
- `judge_rubric` (adversarial) β `_score_behavioral`: heuristic β fail if it used a
`forbidden_tool` or answered when it should clarify/refuse.
- `ndcg@k` (predictive) β captured but **not auto-scored** unless `--include-predictive`
(those train real models, slow). Plan precision/recall computed for every row.
Run:
```bash
export SDK_ACCESS_TOKEN=β¦ LEXSI_WORKSPACE_NAME=β¦ LEXSI_TEXT_PROJECT_NAME=β¦ # + org/model/provider
uv run python -m benchmark.pkdd_runner --llm lexsi --log-dir artifacts/pkdd_runs
# scope / debug
uv run python -m benchmark.pkdd_runner --tier analytic --limit 5 --llm lexsi
uv run python -m benchmark.pkdd_runner --include-predictive --llm lexsi
```
Flags: `--tier`, `--include-predictive`, `--limit`, `--llm`, `--log-dir`,
`--llm-cache-dir`/`--no-llm-cache`, `-v`. Outputs: per-row trace JSON + a per-tier
scoreboard (pass/scored + plan p/r). The agent queries the fixture (handle from
`load_pkdd_handle()` with `duckdb_path` repointed to the fixture).
> Note: `bench/pkdd/sessions.yaml` (multi-turn) and `p2_feature_engineering.yaml`
> (separate `assertions` schema) are **not** run by `pkdd_runner` yet.
### 13c. Datagen pipeline (generates the PKDD questions) β `benchmark/datagen/`
Template-based; authoring is per-template, so ~10 templates yield 500+ rows. Stages:
column inventory β templates β instantiate β execute gold SQL on the pinned fixture β
LLM round-trip verify β predictive enrichment β multi-turn compose β emit YAML.
```bash
uv run python -m benchmark.datagen pin-fixture # snapshot artifacts/financial.duckdb
uv run python -m benchmark.datagen run --skip-roundtrip # fast (skip LLM Stage 4)
uv run python -m benchmark.datagen run # full (needs Lexsi text env)
```
Every emitted row carries `fixture_sha`; a scoreboard from a different sha isn't comparable.
The grading design (5 axes, tiers, pass^k) lives in [`v1_benchmarking.md`](v1_benchmarking.md).
### 13d. SDK repro / probe scripts β `scripts/repro_*`
Standalone, self-contained scripts that hit the live Lexsi SDK against a real
trained model and report OK/FAIL per call. They're how we validate the
SDK-backed tools and file platform bugs. Each catches every call so one run
produces a complete report; each leaves its project on the platform for
Activity-Log inspection.
- **`scripts/repro_tabicl/`** β reproduces TabICL `model_inference` + per-case XAI
failures (empty `Exception` on T4 pods, inference hang/timeout, `case_predict`
`ValidationError`). Ships its own PKDD CSVs in `data/`.
- **`scripts/repro_model_lifecycle/`** β probe harness for the **model-lifecycle
tools** (`list_available_models`, `select_active_model`, `compare_models`,
`check_drift`, `monitor_performance`) + the future explanation methods. Trains
TabICL + XGBoost on the (local) PKDD CSVs and calls each SDK method. Two scripts:
`repro_model_lifecycle.py` (TabICL-first, the clean path) and
`repro_model_lifecycle_xgboost_first.py` (XGBoost-first, reproduces the `#05-013`
cascade). Run: `uv run python scripts/repro_model_lifecycle/repro_model_lifecycle.py`
(env: `SDK_ACCESS_TOKEN`, `LEXSI_WORKSPACE_NAME`, `LEXSI_ORG_NAME`).
**Live SDK findings from the lifecycle repro (last run 13 OK / 4 FAIL):**
- `#05-013` β classic-ML (XGBoost) explainability scans **every stored column,
including the server-injected `tag` column**, and fails `float()` on a
non-numeric one. The SDK uploads clean data + an explicit `feature_include`
(`tabular.py:285,368`); explainability ignores it. Model still **builds**
(non-fatal), but `upload_data` raises and **rolls back the upload** β cascade
(`train_model` β "Upload files first", predict upload β "Project Config is
required"). TabICL's foundation path doesn't trip it. **Fix for the agent:**
treat `#05-013` as success-with-warning, and train foundation-first / drop or
encode non-numeric columns.
- `evals_tabular(<foundation model>)` β `Exception: 'model'` (KeyError) β works
for classic ML, breaks for TabICL. Blocks `compare_models` on foundation models.
- `get_model_performance(...)` β `'utf-8' codec can't decode β¦` β response decode
bug. Blocks `monitor_performance`.
- per-case XAI (`case_predict`, `get_feature_importance`) needs (a) the model
**active** + an inference run first (else "Inference status inactive"), and
(b) SHAP **computed at train** (`xai=["shap"]`) β which itself trips `#05-013`
for classic ML. `case_predict(risk_policies=True)` works without SHAP.
The five lifecycle tools degrade gracefully against these (per-model error capture
in `compare_models`; actionable `ok=False` in `monitor_performance`). Record new
findings in [`sdk_issues.md`](sdk_issues.md).
---
## 14. Deploy
- **Docker** ([Dockerfile](../Dockerfile)): `python:3.10-slim`, CPU-only torch, pinned
deps, **bakes** `artifacts/financial.duckdb` (the PKDD source TSVs are Git-LFS
pointers), serves Gradio on **7850**. Build for the platform arch:
`docker buildx build --platform linux/amd64 --provenance=false --sbom=false -t bplexsi/lexsi-ds-agent:prod_vN --push .`
- **HF Space** β a Gradio Space (`README.md` frontmatter `sdk: gradio`,
`app_file: app/gradio_app.py`); the Dockerfile is ignored there.
- **Lexsi platform** β [config.yaml](../config.yaml): one container on port 7850; the
real `SDK_ACCESS_TOKEN` goes in the platform env tab (the repo keeps a placeholder).
---
## 15. Sharp edges (things that bit us)
- **No LLM timeout = frozen run.** Always keep `_call_with_timeout` in the path (Β§9).
- **Tool arg-name drift.** The planner reuses sibling names (`table_or_label`,
`source_columns`, `prompt`); mismatched schemas β `validation_error` loops. Alias them.
- **DataFrame truthiness.** `x = cache.get(a) or cache.get(b)` raises on a DataFrame; use explicit `is None`.
- **String-typed dates/numbers.** Source columns are often VARCHAR; rely on the
`ColumnInfo.sample` + the `TRY_CAST`/`try_strptime` guidance in the text_to_sql prompt.
- **DB cache contamination.** The master must stay pristine β agents write to the
working copy, never the master (Β§7).
- **`artifacts/sessions/` growth.** Working copies/pgdata are cleaned now; if you add a
loader, clean up after it.
- **Single-run bench numbers are noisy** (DAB sits in an 8β9/17 band, 11/17 ceiling).
Use `--iterations` and read the per-task/failure breakdown, not the headline.
---
## 16. "Where do I look forβ¦"
| Want to⦠| Go to |
|---|---|
| change the planner behavior / rules | `prompts.py` (`PLANNER_SYSTEM`) |
| add/modify a tool | `tools/<name>.py` + `tools/__init__.py` (+ `_TOOL_GROUPS`) |
| change which tools the planner sees | `prompts.py` selector (`_CORE_TOOLS`, `_TOOL_GROUPS`) |
| connect a new datasource | `datasource.py` (loaders) + `connect_datalake` tool |
| change LLM / caching / timeout | `llm/client.py` |
| run/extend DAB | `benchmark/dab/{adapter,runner}.py` |
| run/extend PKDD | `benchmark/pkdd_runner.py` + `bench/pkdd/questions.yaml` |
| regenerate PKDD questions | `benchmark/datagen/` |
| model-lifecycle tools (list/select/compare/drift/monitor) | `tools/{list_available_models,select_active_model,compare_models,check_drift,monitor_performance}.py` + `tools/_tabular_common.py` |
| probe the live SDK / file an SDK bug | `scripts/repro_model_lifecycle/`, `scripts/repro_tabicl/` β `docs/sdk_issues.md` |
| the UI | `app/gradio_app.py` |
| roadmap / what's next | `v1_tools.md`, `tools_remaining_and_dab_hardening.md` |
|