Atom Bioworks
commited on
Create requirements.txt
Browse files- requirements.txt +170 -0
requirements.txt
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| 1 |
+
absl-py==2.1.0
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| 2 |
+
accelerate==0.30.0
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| 3 |
+
aiohttp==3.9.5
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| 4 |
+
aiosignal==1.3.1
|
| 5 |
+
antlr4-python3-runtime==4.9.3
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| 6 |
+
asttokens==2.4.1
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| 7 |
+
astunparse==1.6.3
|
| 8 |
+
async-timeout==4.0.3
|
| 9 |
+
attrs==23.2.0
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| 10 |
+
beautifulsoup4==4.12.3
|
| 11 |
+
biopython==1.83
|
| 12 |
+
bleach==6.1.0
|
| 13 |
+
boto3==1.34.142
|
| 14 |
+
botocore==1.34.142
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| 15 |
+
certifi==2024.2.2
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| 16 |
+
charset-normalizer==3.3.2
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| 17 |
+
chex==0.1.86
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| 18 |
+
comm==0.2.2
|
| 19 |
+
contourpy==1.2.1
|
| 20 |
+
cycler==0.12.1
|
| 21 |
+
datasets==2.19.1
|
| 22 |
+
debugpy==1.8.1
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| 23 |
+
decorator==5.1.1
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| 24 |
+
defusedxml==0.7.1
|
| 25 |
+
dill==0.3.8
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| 26 |
+
dm-haiku==0.0.12
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| 27 |
+
et-xmlfile==1.1.0
|
| 28 |
+
etils==1.5.2
|
| 29 |
+
exceptiongroup==1.2.1
|
| 30 |
+
executing==2.0.1
|
| 31 |
+
fair-esm==2.0.0
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| 32 |
+
fastjsonschema==2.20.0
|
| 33 |
+
filelock==3.14.0
|
| 34 |
+
flatbuffers==24.3.25
|
| 35 |
+
flax==0.8.5
|
| 36 |
+
fonttools==4.51.0
|
| 37 |
+
frozenlist==1.4.1
|
| 38 |
+
fsspec==2024.3.1
|
| 39 |
+
gast==0.5.4
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| 40 |
+
gdown==5.1.0
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| 41 |
+
google-pasta==0.2.0
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| 42 |
+
grpcio==1.63.0
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| 43 |
+
h5py==3.11.0
|
| 44 |
+
huggingface-hub==0.23.0
|
| 45 |
+
idna==3.7
|
| 46 |
+
importlib_metadata==7.1.0
|
| 47 |
+
importlib_resources==6.4.0
|
| 48 |
+
ipykernel==6.29.4
|
| 49 |
+
ipython==8.18.1
|
| 50 |
+
jax==0.4.27
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| 51 |
+
jax-cuda12-pjrt==0.4.27
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| 52 |
+
jax-cuda12-plugin==0.4.27
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| 53 |
+
jaxlib==0.4.27
|
| 54 |
+
jedi==0.19.1
|
| 55 |
+
Jinja2==3.1.4
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| 56 |
+
jmespath==1.0.1
|
| 57 |
+
jmp==0.0.4
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| 58 |
+
joblib==1.4.2
|
| 59 |
+
jsonschema==4.22.0
|
| 60 |
+
jsonschema-specifications==2023.12.1
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| 61 |
+
jupyter_client==8.6.1
|
| 62 |
+
jupyter_core==5.7.2
|
| 63 |
+
jupyterlab_pygments==0.3.0
|
| 64 |
+
keras==3.3.3
|
| 65 |
+
kiwisolver==1.4.5
|
| 66 |
+
libclang==18.1.1
|
| 67 |
+
Markdown==3.6
|
| 68 |
+
markdown-it-py==3.0.0
|
| 69 |
+
MarkupSafe==2.1.5
|
| 70 |
+
matplotlib==3.8.4
|
| 71 |
+
matplotlib-inline==0.1.7
|
| 72 |
+
mdurl==0.1.2
|
| 73 |
+
mistune==3.0.2
|
| 74 |
+
ml-dtypes==0.3.2
|
| 75 |
+
mpmath==1.3.0
|
| 76 |
+
msgpack==1.0.8
|
| 77 |
+
multidict==6.0.5
|
| 78 |
+
multiprocess==0.70.16
|
| 79 |
+
namex==0.0.8
|
| 80 |
+
nbclient==0.10.0
|
| 81 |
+
nbconvert==7.16.4
|
| 82 |
+
nbformat==5.10.4
|
| 83 |
+
nest-asyncio==1.6.0
|
| 84 |
+
networkx==3.2.1
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| 85 |
+
nucleotide-transformer @ file:///home/abwer/aptLM/nucleotide-transformer
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| 86 |
+
numpy==1.26.4
|
| 87 |
+
nvidia-cublas-cu12==12.1.3.1
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| 88 |
+
nvidia-cuda-cupti-cu12==12.1.105
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| 89 |
+
nvidia-cuda-nvcc-cu12==12.5.82
|
| 90 |
+
nvidia-cuda-nvrtc-cu12==12.1.105
|
| 91 |
+
nvidia-cuda-runtime-cu12==12.1.105
|
| 92 |
+
nvidia-cudnn-cu12==8.9.2.26
|
| 93 |
+
nvidia-cufft-cu12==11.0.2.54
|
| 94 |
+
nvidia-curand-cu12==10.3.2.106
|
| 95 |
+
nvidia-cusolver-cu12==11.4.5.107
|
| 96 |
+
nvidia-cusparse-cu12==12.1.0.106
|
| 97 |
+
nvidia-nccl-cu12==2.20.5
|
| 98 |
+
nvidia-nvjitlink-cu12==12.4.127
|
| 99 |
+
nvidia-nvtx-cu12==12.1.105
|
| 100 |
+
omegaconf==2.3.0
|
| 101 |
+
openpyxl==3.1.5
|
| 102 |
+
opt-einsum==3.3.0
|
| 103 |
+
optax==0.2.3
|
| 104 |
+
optree==0.11.0
|
| 105 |
+
orbax-checkpoint==0.5.20
|
| 106 |
+
packaging==24.0
|
| 107 |
+
pandas==2.2.2
|
| 108 |
+
pandocfilters==1.5.1
|
| 109 |
+
parso==0.8.4
|
| 110 |
+
pexpect==4.9.0
|
| 111 |
+
pillow==10.3.0
|
| 112 |
+
platformdirs==4.2.1
|
| 113 |
+
prompt-toolkit==3.0.43
|
| 114 |
+
protobuf==4.25.3
|
| 115 |
+
psutil==5.9.8
|
| 116 |
+
ptyprocess==0.7.0
|
| 117 |
+
pure-eval==0.2.2
|
| 118 |
+
pyarrow==16.0.0
|
| 119 |
+
pyarrow-hotfix==0.6
|
| 120 |
+
Pygments==2.18.0
|
| 121 |
+
pyparsing==3.1.2
|
| 122 |
+
PySocks==1.7.1
|
| 123 |
+
python-dateutil==2.9.0.post0
|
| 124 |
+
pytz==2024.1
|
| 125 |
+
PyYAML==6.0.1
|
| 126 |
+
pyzmq==26.0.3
|
| 127 |
+
referencing==0.35.1
|
| 128 |
+
regex==2024.4.28
|
| 129 |
+
requests==2.31.0
|
| 130 |
+
rich==13.7.1
|
| 131 |
+
rpds-py==0.18.1
|
| 132 |
+
s3transfer==0.10.2
|
| 133 |
+
safetensors==0.4.3
|
| 134 |
+
scikit-learn==1.4.2
|
| 135 |
+
scipy==1.13.0
|
| 136 |
+
seaborn==0.13.2
|
| 137 |
+
six==1.16.0
|
| 138 |
+
soupsieve==2.5
|
| 139 |
+
stack-data==0.6.3
|
| 140 |
+
sympy==1.12
|
| 141 |
+
tabulate==0.9.0
|
| 142 |
+
tensorboard==2.16.2
|
| 143 |
+
tensorboard-data-server==0.7.2
|
| 144 |
+
tensorflow==2.16.1
|
| 145 |
+
tensorflow-io-gcs-filesystem==0.37.0
|
| 146 |
+
tensorstore==0.1.63
|
| 147 |
+
termcolor==2.4.0
|
| 148 |
+
threadpoolctl==3.5.0
|
| 149 |
+
timeout-decorator==0.5.0
|
| 150 |
+
tinycss2==1.3.0
|
| 151 |
+
tokenizers==0.19.1
|
| 152 |
+
toolz==0.12.1
|
| 153 |
+
torch==2.3.0
|
| 154 |
+
torchvision==0.18.0
|
| 155 |
+
tornado==6.4
|
| 156 |
+
tqdm==4.66.4
|
| 157 |
+
traitlets==5.14.3
|
| 158 |
+
transformers==4.40.2
|
| 159 |
+
triton==2.3.0
|
| 160 |
+
typing_extensions==4.11.0
|
| 161 |
+
tzdata==2024.1
|
| 162 |
+
urllib3==1.26.19
|
| 163 |
+
wcwidth==0.2.13
|
| 164 |
+
webencodings==0.5.1
|
| 165 |
+
Werkzeug==3.0.3
|
| 166 |
+
wget==3.2
|
| 167 |
+
wrapt==1.16.0
|
| 168 |
+
xxhash==3.4.1
|
| 169 |
+
yarl==1.9.4
|
| 170 |
+
zipp==3.18.1
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