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+ *.7z filter=lfs diff=lfs merge=lfs -text
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README.md ADDED
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+ ---
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+ title: ChestXrayClassification
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+ emoji: 🌖
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+ colorFrom: gray
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+ colorTo: purple
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+ sdk: gradio
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+ sdk_version: 3.39.0
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+ app_file: app.py
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+ pinned: false
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+ license: openrail
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+ ---
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+
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+ Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
alexnet_pretrained.pth ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:9685c58431c076bac73b4d0999c2cb62b4c7cd6f28cb5aa622c16dc83e54d736
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+ size 9920219
app.py ADDED
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+ ### 1. Imports and class names setup ###
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+ import gradio as gr
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+ import os
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+ import torch
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+
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+ from model import create_effnetb2_model
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+ from timeit import default_timer as timer
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+ from typing import Tuple, Dict
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+
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+ # Setup class names
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+ class_names = ["Normal", "Pneumonia"]
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+
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+ ### 2. Model and transforms preparation ###
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+
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+ # Create EffNetB2 model
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+ effnetb2, effnetb2_transforms = create_effnetb2_model(
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+ num_classes=1, # len(class_names) would also work
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+ )
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+
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+ # Load saved weights
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+ effnetb2.load_state_dict(
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+ torch.load(
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+ f="alexnet_pretrained.pth",
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+ map_location=torch.device("cpu"), # load to CPU
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+ )
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+ )
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+
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+
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+ def predict(img) -> Tuple[Dict, float]:
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+ """Transforms and performs a prediction on img and returns prediction and time taken.
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+ """
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+ # Start the timer
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+ start_time = timer()
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+
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+ # Transform the target image and add a batch dimension
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+ img = effnetb2_transforms(img).unsqueeze(0)
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+
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+ # Put model into evaluation mode and turn on inference mode
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+ effnetb2.eval()
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+ with torch.inference_mode():
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+ # Pass the transformed image through the model and turn the prediction logits into prediction probabilities
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+ pred_probs = torch.sigmoid(effnetb2(img)).squeeze()
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+
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+ # Create a prediction label and prediction probability dictionary for each prediction class (this is the required format for Gradio's output parameter)
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+ if (torch.round(pred_probs) == 1):
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+ pred_labels_and_probs = {
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+ 'Normal': 1-pred_probs.item(), 'Pneumonia': pred_probs.item()}
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+ else:
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+ pred_labels_and_probs = {
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+ 'Normal': pred_probs.item(), 'Pneumonia': 1-pred_probs.item()}
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+
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+ # Calculate the prediction time
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+ pred_time = round(timer() - start_time, 5)
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+
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+ # Return the prediction dictionary and prediction time
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+ return pred_labels_and_probs, pred_time
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+
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+
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+ example_list = [[f"examples/example{i+1}"] for i in range(3)]
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+ # Create title, description and article strings
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+ title = "ChestXray Classification"
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+ description = "An Alexnet computer vision model to classify images of Xray Chest images as Normal or Pneumonia."
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+ article = "Created at (https://github.com/azizche/chest_xray_Classification)."
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+
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+ # Create the Gradio demo
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+ demo = gr.Interface(fn=predict, # mapping function from input to output
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+ inputs=gr.Image(type="pil"), # what are the inputs?
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+ outputs=[gr.Label(num_top_classes=2, label="Predictions"), # what are the outputs?
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+ gr.Number(label="Prediction time (s)")], # our fn has two outputs, therefore we have two outputs
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+ examples=example_list,
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+ title=title,
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+ description=description,
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+ article=article)
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+
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+ # Launch the demo!
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+ demo.launch()
examples/example1.jpg ADDED
examples/example2.jpg ADDED
examples/example3.jpg ADDED
model.py ADDED
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+ import torch
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+ import torchvision
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+
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+ from torch import nn
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+
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+
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+ def create_effnetb2_model(num_classes: int = 1,
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+ seed: int = 42):
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+ """Creates an EfficientNetB2 feature extractor model and transforms.
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+
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+ Args:
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+ num_classes (int, optional): number of classes in the classifier head.
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+ Defaults to 3.
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+ seed (int, optional): random seed value. Defaults to 42.
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+
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+ Returns:
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+ model (torch.nn.Module): EffNetB2 feature extractor model.
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+ transforms (torchvision.transforms): EffNetB2 image transforms.
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+ """
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+ # Create EffNetB2 pretrained weights, transforms and model
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+ weights = torchvision.models.AlexNet_Weights.DEFAULT
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+ transforms = weights.transforms()
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+ model = torchvision.models.alexNet(weights=weights)
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+
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+ # Freeze all layers in base model
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+ for param in model.parameters():
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+ param.requires_grad = False
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+
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+ # Change classifier head with random seed for reproducibility
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+ torch.manual_seed(seed)
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+ model.classifier = nn.Sequential(
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+ nn.Dropout(p=0.2,),
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+ nn.Linear(in_features=9216, out_features=1),
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+ )
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+
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+ return model, transforms
requirements.txt ADDED
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+ torch
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+ torchvision
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+ gradio