Upload 13 files
Browse files- DEPLOYMENT_GUIDE.md +310 -0
- DEPLOYMENT_STRUCTURE.md +240 -0
- DEPLOYMENT_SUMMARY.md +218 -0
- README.md +57 -13
- TROUBLESHOOTING.md +189 -0
- app.py +687 -0
- copy_models.py +50 -0
- fix_numpy.py +25 -0
- models/model_info.json +15 -0
- models/production_model.pkl +3 -0
- models/smoteenn_preprocessor.pkl +3 -0
- requirements.txt +5 -0
- verify_deployment.py +253 -0
DEPLOYMENT_GUIDE.md
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| 1 |
+
# 🚀 HUGGING FACE SPACES DEPLOYMENT GUIDE
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| 2 |
+
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## Hospital Readmission Risk Predictor
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+
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| 5 |
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This guide will help you deploy the Hospital Readmission Risk Predictor on Hugging Face Spaces.
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+
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+
---
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+
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+
## 📋 Prerequisites
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1. **Hugging Face Account**: Sign up at [huggingface.co](https://huggingface.co)
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+
2. **Git LFS**: Install Git Large File Storage for model files
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+
3. **Model Files**: Ensure you have the trained model files
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---
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+
## 🏗️ Deployment Structure
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| 18 |
+
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```
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+
huggingface_deployment/
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+
├── app.py # Main Gradio application
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├── requirements.txt # Python dependencies
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├── README.md # Space documentation
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├── copy_models.py # Script to copy model files
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├── models/ # Model files directory
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│ ├── production_model.pkl
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│ ├── smoteenn_preprocessor.pkl
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│ └── model_info.json
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└── DEPLOYMENT_GUIDE.md # This file
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```
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---
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## 🚀 Step-by-Step Deployment
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### Step 1: Prepare Model Files
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| 37 |
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| 38 |
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1. **Copy model files to deployment directory:**
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| 39 |
+
```bash
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cd huggingface_deployment
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python copy_models.py
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| 42 |
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```
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2. **Verify model files exist:**
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- `models/production_model.pkl` (RandomForest model)
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- `models/smoteenn_preprocessor.pkl` (Preprocessor)
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- `models/model_info.json` (Model metadata)
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### Step 2: Create Hugging Face Space
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1. **Go to Hugging Face Spaces:** [huggingface.co/spaces](https://huggingface.co/spaces)
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2. **Click "Create new Space"**
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3. **Configure Space:**
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- **Space name:** `hospital-readmission-predictor`
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- **License:** MIT
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- **SDK:** Gradio
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- **Hardware:** CPU Basic (free tier)
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- **Visibility:** Public
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+
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+
### Step 3: Upload Files
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| 63 |
+
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| 64 |
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#### Option A: Web Interface Upload
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| 65 |
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+
1. **Upload files one by one:**
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| 67 |
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- Upload `app.py`
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| 68 |
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- Upload `requirements.txt`
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- Upload `README.md`
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| 70 |
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- Create `models/` folder and upload model files
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| 71 |
+
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| 72 |
+
#### Option B: Git Repository (Recommended)
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| 73 |
+
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| 74 |
+
1. **Clone your space repository:**
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| 75 |
+
```bash
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| 76 |
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git clone https://huggingface.co/spaces/YOUR_USERNAME/hospital-readmission-predictor
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| 77 |
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cd hospital-readmission-predictor
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| 78 |
+
```
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| 79 |
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| 80 |
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2. **Copy deployment files:**
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| 81 |
+
```bash
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| 82 |
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cp ../huggingface_deployment/* .
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| 83 |
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cp -r ../huggingface_deployment/models .
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| 84 |
+
```
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| 85 |
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| 86 |
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3. **Set up Git LFS for model files:**
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| 87 |
+
```bash
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git lfs install
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git lfs track "*.pkl"
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| 90 |
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git lfs track "*.json"
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| 91 |
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```
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| 92 |
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| 93 |
+
4. **Commit and push:**
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| 94 |
+
```bash
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| 95 |
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git add .
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git commit -m "Initial deployment of hospital readmission predictor"
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| 97 |
+
git push
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| 98 |
+
```
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| 99 |
+
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| 100 |
+
### Step 4: Configure Space
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| 101 |
+
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| 102 |
+
1. **Add Space metadata** (in README.md header):
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| 103 |
+
```yaml
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| 104 |
+
---
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| 105 |
+
title: Hospital Readmission Risk Predictor
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| 106 |
+
emoji: 🏥
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+
colorFrom: blue
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+
colorTo: green
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+
sdk: gradio
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| 110 |
+
sdk_version: 4.44.0
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| 111 |
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app_file: app.py
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pinned: false
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| 113 |
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license: mit
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| 114 |
+
---
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| 115 |
+
```
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| 117 |
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2. **Wait for build** (usually 2-5 minutes)
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| 118 |
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| 119 |
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3. **Check build logs** for any errors
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| 120 |
+
|
| 121 |
+
---
|
| 122 |
+
|
| 123 |
+
## 🔧 Configuration Options
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| 124 |
+
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| 125 |
+
### Hardware Upgrade (Optional)
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| 126 |
+
|
| 127 |
+
For better performance with larger models:
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| 128 |
+
|
| 129 |
+
1. **Go to Space Settings**
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| 130 |
+
2. **Select Hardware:** Choose CPU Basic → CPU Optimized or GPU
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| 131 |
+
3. **Apply changes** (may have cost implications)
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| 132 |
+
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| 133 |
+
### Environment Variables
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| 134 |
+
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| 135 |
+
If needed, add environment variables in Space settings:
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| 136 |
+
- `MODEL_PATH`: Path to model files
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| 137 |
+
- `DEBUG`: Set to "true" for debug mode
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| 138 |
+
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| 139 |
+
---
|
| 140 |
+
|
| 141 |
+
## 🧪 Testing Deployment
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| 142 |
+
|
| 143 |
+
### Test Inputs
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| 144 |
+
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| 145 |
+
Use these sample inputs to verify the deployment:
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| 146 |
+
|
| 147 |
+
**High Risk Patient:**
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| 148 |
+
- Age: 75 years
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| 149 |
+
- Length of Stay: 8 days
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| 150 |
+
- Medications: 18
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| 151 |
+
- Emergency Visits: 2
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| 152 |
+
- Hemoglobin: 9.5 g/dL
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| 153 |
+
- Sodium: 130 mEq/L
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| 154 |
+
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| 155 |
+
**Low Risk Patient:**
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| 156 |
+
- Age: 45 years
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| 157 |
+
- Length of Stay: 2 days
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| 158 |
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- Medications: 5
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| 159 |
+
- Emergency Visits: 0
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| 160 |
+
- Hemoglobin: 13.5 g/dL
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| 161 |
+
- Sodium: 142 mEq/L
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| 162 |
+
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| 163 |
+
### Expected Behavior
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| 164 |
+
|
| 165 |
+
1. **Interface loads properly** with all input fields
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| 166 |
+
2. **Predictions generate** without errors
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| 167 |
+
3. **Risk categories** display correctly
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| 168 |
+
4. **Clinical recommendations** appear
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| 169 |
+
5. **No console errors** in browser dev tools
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| 170 |
+
|
| 171 |
+
---
|
| 172 |
+
|
| 173 |
+
## 🐛 Troubleshooting
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| 174 |
+
|
| 175 |
+
### Common Issues
|
| 176 |
+
|
| 177 |
+
1. **Model files not loading:**
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| 178 |
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- Check file sizes (should be > 0 bytes)
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| 179 |
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- Verify Git LFS is tracking .pkl files
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| 180 |
+
- Ensure model files are in correct directory
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| 181 |
+
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| 182 |
+
2. **Dependencies not installing:**
|
| 183 |
+
- Check requirements.txt syntax
|
| 184 |
+
- Verify package versions are compatible
|
| 185 |
+
- Review build logs for specific errors
|
| 186 |
+
|
| 187 |
+
3. **Gradio interface not loading:**
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| 188 |
+
- Check app.py syntax
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| 189 |
+
- Verify Gradio version compatibility
|
| 190 |
+
- Review console errors
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| 191 |
+
|
| 192 |
+
4. **Prediction errors:**
|
| 193 |
+
- Verify model files are valid
|
| 194 |
+
- Check feature engineering consistency
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| 195 |
+
- Review prediction function logic
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| 196 |
+
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| 197 |
+
### Debug Mode
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| 198 |
+
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| 199 |
+
Enable debug mode by modifying app.py:
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| 200 |
+
|
| 201 |
+
```python
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# Add at top of app.py
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import logging
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| 204 |
+
logging.basicConfig(level=logging.DEBUG)
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+
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# In create_gradio_interface function
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| 207 |
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demo.launch(debug=True, show_error=True)
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| 208 |
+
```
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| 209 |
+
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| 210 |
+
---
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| 211 |
+
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| 212 |
+
## 📊 Performance Monitoring
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| 213 |
+
|
| 214 |
+
### Space Analytics
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| 215 |
+
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| 216 |
+
Monitor your Space performance:
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| 217 |
+
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| 218 |
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1. **Visit Space Settings → Analytics**
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| 219 |
+
2. **Check usage metrics:**
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| 220 |
+
- Daily active users
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| 221 |
+
- Total predictions
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| 222 |
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- Average response time
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| 223 |
+
- Error rates
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| 224 |
+
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| 225 |
+
### Model Performance
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| 226 |
+
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| 227 |
+
Track prediction quality:
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| 228 |
+
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| 229 |
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1. **Log predictions** (if compliance allows)
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| 230 |
+
2. **Monitor prediction distributions**
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| 231 |
+
3. **Collect user feedback**
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| 232 |
+
4. **Validate against clinical outcomes**
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| 233 |
+
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| 234 |
+
---
|
| 235 |
+
|
| 236 |
+
## 🔄 Updates and Maintenance
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| 237 |
+
|
| 238 |
+
### Model Updates
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| 239 |
+
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| 240 |
+
To update the model:
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| 241 |
+
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| 242 |
+
1. **Train new model version**
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| 243 |
+
2. **Update model files** in deployment
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| 244 |
+
3. **Test thoroughly** before deployment
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| 245 |
+
4. **Document changes** in README.md
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| 246 |
+
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| 247 |
+
### Code Updates
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| 248 |
+
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| 249 |
+
For application updates:
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| 250 |
+
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| 251 |
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1. **Test changes locally** first
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| 252 |
+
2. **Update version numbers**
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| 253 |
+
3. **Commit and push** to Space repository
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| 254 |
+
4. **Monitor build** and test functionality
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| 255 |
+
|
| 256 |
+
---
|
| 257 |
+
|
| 258 |
+
## 🔐 Security Considerations
|
| 259 |
+
|
| 260 |
+
### Data Privacy
|
| 261 |
+
|
| 262 |
+
1. **No PHI storage:** Ensure no patient data is logged
|
| 263 |
+
2. **Secure predictions:** Use HTTPS for all communications
|
| 264 |
+
3. **Compliance:** Follow HIPAA/GDPR requirements
|
| 265 |
+
4. **Audit logging:** Track access and usage
|
| 266 |
+
|
| 267 |
+
### Model Security
|
| 268 |
+
|
| 269 |
+
1. **Model integrity:** Verify model files haven't been tampered
|
| 270 |
+
2. **Input validation:** Sanitize all user inputs
|
| 271 |
+
3. **Rate limiting:** Consider adding rate limits for API calls
|
| 272 |
+
4. **Access controls:** Monitor who can access the Space
|
| 273 |
+
|
| 274 |
+
---
|
| 275 |
+
|
| 276 |
+
## 📞 Support
|
| 277 |
+
|
| 278 |
+
### Resources
|
| 279 |
+
|
| 280 |
+
- **Hugging Face Docs:** [huggingface.co/docs/hub/spaces](https://huggingface.co/docs/hub/spaces)
|
| 281 |
+
- **Gradio Docs:** [gradio.app/docs](https://gradio.app/docs)
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| 282 |
+
- **Community Forum:** [discuss.huggingface.co](https://discuss.huggingface.co)
|
| 283 |
+
|
| 284 |
+
### Getting Help
|
| 285 |
+
|
| 286 |
+
1. **Check build logs** for specific error messages
|
| 287 |
+
2. **Review documentation** for common solutions
|
| 288 |
+
3. **Search community forums** for similar issues
|
| 289 |
+
4. **Post detailed questions** with error logs if needed
|
| 290 |
+
|
| 291 |
+
---
|
| 292 |
+
|
| 293 |
+
## ✅ Deployment Checklist
|
| 294 |
+
|
| 295 |
+
- [ ] Model files copied and verified
|
| 296 |
+
- [ ] Requirements.txt includes all dependencies
|
| 297 |
+
- [ ] README.md has proper Space metadata
|
| 298 |
+
- [ ] Git LFS configured for model files
|
| 299 |
+
- [ ] Space created on Hugging Face
|
| 300 |
+
- [ ] Files uploaded successfully
|
| 301 |
+
- [ ] Build completed without errors
|
| 302 |
+
- [ ] Interface loads properly
|
| 303 |
+
- [ ] Test predictions work correctly
|
| 304 |
+
- [ ] Error handling functions properly
|
| 305 |
+
- [ ] Documentation is complete
|
| 306 |
+
- [ ] Security considerations addressed
|
| 307 |
+
|
| 308 |
+
---
|
| 309 |
+
|
| 310 |
+
**🎉 Congratulations!** Your Hospital Readmission Risk Predictor is now deployed on Hugging Face Spaces!
|
DEPLOYMENT_STRUCTURE.md
ADDED
|
@@ -0,0 +1,240 @@
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|
|
| 1 |
+
# 🏥 HUGGING FACE SPACES DEPLOYMENT STRUCTURE
|
| 2 |
+
|
| 3 |
+
## Complete Hospital Readmission Risk Predictor Deployment
|
| 4 |
+
|
| 5 |
+
This directory contains everything needed to deploy the Hospital Readmission Risk Predictor on Hugging Face Spaces.
|
| 6 |
+
|
| 7 |
+
---
|
| 8 |
+
|
| 9 |
+
## 📁 File Structure
|
| 10 |
+
|
| 11 |
+
```
|
| 12 |
+
huggingface_deployment/
|
| 13 |
+
├── 📱 app.py # Main Gradio application (Production-ready)
|
| 14 |
+
├── 📋 requirements.txt # Python dependencies
|
| 15 |
+
├── 📖 README.md # Space documentation and metadata
|
| 16 |
+
├── 🚀 DEPLOYMENT_GUIDE.md # Comprehensive deployment instructions
|
| 17 |
+
├── 🔧 copy_models.py # Script to copy model files
|
| 18 |
+
├── ✅ verify_deployment.py # Deployment verification script
|
| 19 |
+
├── 📊 deployment_summary.json # Auto-generated deployment status
|
| 20 |
+
└── 📦 models/ # Model files directory
|
| 21 |
+
├── 🤖 production_model.pkl (153.8 MB) - RandomForest model
|
| 22 |
+
├── ⚙️ smoteenn_preprocessor.pkl (6.9 KB) - Data preprocessor
|
| 23 |
+
└── 📋 model_info.json (454 B) - Model metadata
|
| 24 |
+
```
|
| 25 |
+
|
| 26 |
+
---
|
| 27 |
+
|
| 28 |
+
## 🎯 Key Features
|
| 29 |
+
|
| 30 |
+
### ✨ Production-Ready Application
|
| 31 |
+
- **Optimized for Hugging Face Spaces** with proper error handling
|
| 32 |
+
- **Demo mode fallback** when model files aren't available
|
| 33 |
+
- **Clinical scoring algorithms** (LACE & HOSPITAL scores)
|
| 34 |
+
- **Professional medical interface** with comprehensive forms
|
| 35 |
+
- **Real-time risk assessment** with visual indicators
|
| 36 |
+
|
| 37 |
+
### 🧠 Machine Learning Model
|
| 38 |
+
- **Algorithm:** RandomForest Classifier with SMOTEENN preprocessing
|
| 39 |
+
- **Performance:** 74.71% accuracy, 0.827 AUC
|
| 40 |
+
- **Features:** 62 engineered features including clinical scores
|
| 41 |
+
- **Training:** 12,236 samples with 10-fold cross-validation
|
| 42 |
+
|
| 43 |
+
### 🎨 User Interface
|
| 44 |
+
- **Comprehensive input forms** for patient data
|
| 45 |
+
- **Real-time predictions** with risk categorization
|
| 46 |
+
- **Visual risk indicators** with color-coded results
|
| 47 |
+
- **Clinical recommendations** based on risk level
|
| 48 |
+
- **Professional medical styling** with responsive design
|
| 49 |
+
|
| 50 |
+
---
|
| 51 |
+
|
| 52 |
+
## 🚀 Quick Deployment
|
| 53 |
+
|
| 54 |
+
### Step 1: Create Hugging Face Space
|
| 55 |
+
1. Go to [huggingface.co/spaces](https://huggingface.co/spaces)
|
| 56 |
+
2. Click "Create new Space"
|
| 57 |
+
3. Configure:
|
| 58 |
+
- Name: `hospital-readmission-predictor`
|
| 59 |
+
- SDK: Gradio
|
| 60 |
+
- Hardware: CPU Basic (free)
|
| 61 |
+
|
| 62 |
+
### Step 2: Upload Files
|
| 63 |
+
**Option A - Web Upload:**
|
| 64 |
+
- Upload all files from this directory
|
| 65 |
+
- Create `models/` folder and upload model files
|
| 66 |
+
|
| 67 |
+
**Option B - Git Repository:**
|
| 68 |
+
```bash
|
| 69 |
+
git clone https://huggingface.co/spaces/YOUR_USERNAME/hospital-readmission-predictor
|
| 70 |
+
cd hospital-readmission-predictor
|
| 71 |
+
cp -r ../huggingface_deployment/* .
|
| 72 |
+
git lfs install
|
| 73 |
+
git lfs track "*.pkl"
|
| 74 |
+
git add .
|
| 75 |
+
git commit -m "Deploy hospital readmission predictor"
|
| 76 |
+
git push
|
| 77 |
+
```
|
| 78 |
+
|
| 79 |
+
### Step 3: Verify Deployment
|
| 80 |
+
- Wait for build completion (2-5 minutes)
|
| 81 |
+
- Test with sample patients
|
| 82 |
+
- Verify all features work correctly
|
| 83 |
+
|
| 84 |
+
---
|
| 85 |
+
|
| 86 |
+
## 🧪 Testing
|
| 87 |
+
|
| 88 |
+
### High Risk Test Case
|
| 89 |
+
```
|
| 90 |
+
Age: 75 years
|
| 91 |
+
Length of Stay: 8 days
|
| 92 |
+
Medications: 18
|
| 93 |
+
Emergency Visits: 2
|
| 94 |
+
Hemoglobin: 9.5 g/dL
|
| 95 |
+
Sodium: 130 mEq/L
|
| 96 |
+
Expected: HIGH RISK (>50% probability)
|
| 97 |
+
```
|
| 98 |
+
|
| 99 |
+
### Low Risk Test Case
|
| 100 |
+
```
|
| 101 |
+
Age: 45 years
|
| 102 |
+
Length of Stay: 2 days
|
| 103 |
+
Medications: 5
|
| 104 |
+
Emergency Visits: 0
|
| 105 |
+
Hemoglobin: 13.5 g/dL
|
| 106 |
+
Sodium: 142 mEq/L
|
| 107 |
+
Expected: LOW RISK (<30% probability)
|
| 108 |
+
```
|
| 109 |
+
|
| 110 |
+
---
|
| 111 |
+
|
| 112 |
+
## 📊 Model Performance
|
| 113 |
+
|
| 114 |
+
| Metric | Value |
|
| 115 |
+
|--------|-------|
|
| 116 |
+
| **Accuracy** | 74.71% |
|
| 117 |
+
| **AUC Score** | 0.827 |
|
| 118 |
+
| **Precision** | 0.743 |
|
| 119 |
+
| **Recall** | 0.751 |
|
| 120 |
+
| **F1-Score** | 0.747 |
|
| 121 |
+
| **Features** | 62 engineered |
|
| 122 |
+
| **Training Samples** | 12,236 |
|
| 123 |
+
| **Technique** | SMOTEENN |
|
| 124 |
+
|
| 125 |
+
---
|
| 126 |
+
|
| 127 |
+
## 🔧 Technical Stack
|
| 128 |
+
|
| 129 |
+
### Backend
|
| 130 |
+
- **Python 3.8+** with scikit-learn, pandas, numpy
|
| 131 |
+
- **RandomForest Classifier** with SMOTEENN preprocessing
|
| 132 |
+
- **Joblib serialization** for model persistence
|
| 133 |
+
- **JSON metadata** for model information
|
| 134 |
+
|
| 135 |
+
### Frontend
|
| 136 |
+
- **Gradio 4.44.0** for interactive web interface
|
| 137 |
+
- **Custom CSS styling** for professional appearance
|
| 138 |
+
- **Responsive design** for mobile and desktop
|
| 139 |
+
- **Real-time predictions** with visual feedback
|
| 140 |
+
|
| 141 |
+
### Deployment
|
| 142 |
+
- **Hugging Face Spaces** for hosting
|
| 143 |
+
- **Git LFS** for large model files
|
| 144 |
+
- **CPU optimization** for cost-effective inference
|
| 145 |
+
- **Error handling** for robust operation
|
| 146 |
+
|
| 147 |
+
---
|
| 148 |
+
|
| 149 |
+
## 📋 Clinical Scores
|
| 150 |
+
|
| 151 |
+
### LACE Score
|
| 152 |
+
**Components:**
|
| 153 |
+
- **L**ength of stay (0-7 points)
|
| 154 |
+
- **A**cuity of admission (0-3 points)
|
| 155 |
+
- **C**omorbidity index (0-5 points)
|
| 156 |
+
- **E**mergency visits (0-4 points)
|
| 157 |
+
|
| 158 |
+
**Interpretation:**
|
| 159 |
+
- 0-4: Low risk
|
| 160 |
+
- 5-9: Moderate risk
|
| 161 |
+
- 10+: High risk
|
| 162 |
+
|
| 163 |
+
### HOSPITAL Score
|
| 164 |
+
**Components:**
|
| 165 |
+
- **H**emoglobin <12 g/dL (1 point)
|
| 166 |
+
- **O**ncology service (2 points)
|
| 167 |
+
- **S**odium <135 mEq/L (1 point)
|
| 168 |
+
- **P**rocedure during stay (1 point)
|
| 169 |
+
- **I**ndex admission type (1 point)
|
| 170 |
+
- **T**ime in hospital ≥5 days (2 points)
|
| 171 |
+
- **A**dmission **L**ocation (0 points)
|
| 172 |
+
|
| 173 |
+
**Interpretation:**
|
| 174 |
+
- 0-4: Low risk (6.8% readmission)
|
| 175 |
+
- 5-6: Intermediate risk (12.7% readmission)
|
| 176 |
+
- 7+: High risk (23.8% readmission)
|
| 177 |
+
|
| 178 |
+
---
|
| 179 |
+
|
| 180 |
+
## ⚠️ Important Notes
|
| 181 |
+
|
| 182 |
+
### Clinical Use
|
| 183 |
+
- **Decision support tool only** - not for standalone diagnosis
|
| 184 |
+
- **Requires clinical judgment** for patient care decisions
|
| 185 |
+
- **Supplement to clinical assessment** - not replacement
|
| 186 |
+
- **Regular validation recommended** against outcomes
|
| 187 |
+
|
| 188 |
+
### Data Privacy
|
| 189 |
+
- **No patient data storage** - predictions only
|
| 190 |
+
- **HIPAA compliance** considerations required
|
| 191 |
+
- **Secure transmission** via HTTPS
|
| 192 |
+
- **No logging** of sensitive information
|
| 193 |
+
|
| 194 |
+
### Model Limitations
|
| 195 |
+
- **Training data specific** to certain populations
|
| 196 |
+
- **Feature engineering** may need updates
|
| 197 |
+
- **Regular retraining** recommended for accuracy
|
| 198 |
+
- **Clinical validation** required for new environments
|
| 199 |
+
|
| 200 |
+
---
|
| 201 |
+
|
| 202 |
+
## 🔗 Resources
|
| 203 |
+
|
| 204 |
+
### Documentation
|
| 205 |
+
- **Deployment Guide:** `DEPLOYMENT_GUIDE.md`
|
| 206 |
+
- **Model Details:** `models/model_info.json`
|
| 207 |
+
- **Verification Script:** `verify_deployment.py`
|
| 208 |
+
|
| 209 |
+
### External Links
|
| 210 |
+
- **Hugging Face Spaces:** [huggingface.co/docs/hub/spaces](https://huggingface.co/docs/hub/spaces)
|
| 211 |
+
- **Gradio Documentation:** [gradio.app/docs](https://gradio.app/docs)
|
| 212 |
+
- **Model Repository:** [Your GitHub Repository]
|
| 213 |
+
|
| 214 |
+
### Support
|
| 215 |
+
- **Technical Issues:** Check deployment guide troubleshooting
|
| 216 |
+
- **Model Questions:** Review model documentation
|
| 217 |
+
- **Clinical Questions:** Consult healthcare professionals
|
| 218 |
+
|
| 219 |
+
---
|
| 220 |
+
|
| 221 |
+
## 🎉 Success Metrics
|
| 222 |
+
|
| 223 |
+
### Deployment Success
|
| 224 |
+
- ✅ Application loads without errors
|
| 225 |
+
- ✅ All input fields function correctly
|
| 226 |
+
- ✅ Predictions generate properly
|
| 227 |
+
- ✅ Risk categorization displays accurately
|
| 228 |
+
- ✅ Clinical recommendations appear
|
| 229 |
+
- ✅ Interface responsive on mobile/desktop
|
| 230 |
+
|
| 231 |
+
### Model Performance
|
| 232 |
+
- ✅ Predictions match expected ranges
|
| 233 |
+
- ✅ High-risk cases identified correctly
|
| 234 |
+
- ✅ Low-risk cases categorized properly
|
| 235 |
+
- ✅ Clinical scores calculate accurately
|
| 236 |
+
- ✅ Risk factors identified appropriately
|
| 237 |
+
|
| 238 |
+
---
|
| 239 |
+
|
| 240 |
+
**🚀 Ready for Deployment!** Follow the deployment guide for step-by-step instructions.
|
DEPLOYMENT_SUMMARY.md
ADDED
|
@@ -0,0 +1,218 @@
|
|
|
|
|
|
|
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|
| 1 |
+
# 🏥 HUGGING FACE SPACES DEPLOYMENT - COMPLETE PACKAGE
|
| 2 |
+
|
| 3 |
+
## Hospital Readmission Risk Predictor
|
| 4 |
+
|
| 5 |
+
**✅ STATUS: READY FOR DEPLOYMENT**
|
| 6 |
+
|
| 7 |
+
---
|
| 8 |
+
|
| 9 |
+
## 📦 Package Contents
|
| 10 |
+
|
| 11 |
+
### Core Application Files
|
| 12 |
+
- ✅ **app.py** (29.8 KB) - Production-ready Gradio application
|
| 13 |
+
- ✅ **requirements.txt** (82 B) - Python dependencies
|
| 14 |
+
- ✅ **README.md** (1.9 KB) - Space documentation with metadata
|
| 15 |
+
|
| 16 |
+
### Model Files
|
| 17 |
+
- ✅ **production_model.pkl** (153.8 MB) - RandomForest classifier
|
| 18 |
+
- ✅ **smoteenn_preprocessor.pkl** (6.9 KB) - Data preprocessor
|
| 19 |
+
- ✅ **model_info.json** (454 B) - Model metadata
|
| 20 |
+
|
| 21 |
+
### Documentation & Scripts
|
| 22 |
+
- ✅ **DEPLOYMENT_GUIDE.md** (7.7 KB) - Step-by-step deployment instructions
|
| 23 |
+
- ✅ **DEPLOYMENT_STRUCTURE.md** - Complete package overview
|
| 24 |
+
- ✅ **copy_models.py** - Model file preparation script
|
| 25 |
+
- ✅ **verify_deployment.py** - Deployment verification script
|
| 26 |
+
|
| 27 |
+
---
|
| 28 |
+
|
| 29 |
+
## 🚀 Deployment Instructions
|
| 30 |
+
|
| 31 |
+
### Quick Start (5 minutes)
|
| 32 |
+
|
| 33 |
+
1. **Create Hugging Face Space:**
|
| 34 |
+
- Go to https://huggingface.co/spaces
|
| 35 |
+
- Click "Create new Space"
|
| 36 |
+
- Name: `hospital-readmission-predictor`
|
| 37 |
+
- SDK: Gradio
|
| 38 |
+
- Hardware: CPU Basic
|
| 39 |
+
|
| 40 |
+
2. **Upload Files:**
|
| 41 |
+
- Upload all files from this directory
|
| 42 |
+
- Ensure model files are in `models/` subdirectory
|
| 43 |
+
|
| 44 |
+
3. **Wait for Build:**
|
| 45 |
+
- Build takes 2-5 minutes
|
| 46 |
+
- Check build logs for any errors
|
| 47 |
+
|
| 48 |
+
4. **Test Deployment:**
|
| 49 |
+
- Use provided test cases
|
| 50 |
+
- Verify all features work
|
| 51 |
+
|
| 52 |
+
### Advanced Deployment (Git)
|
| 53 |
+
|
| 54 |
+
```bash
|
| 55 |
+
# Clone your space
|
| 56 |
+
git clone https://huggingface.co/spaces/YOUR_USERNAME/hospital-readmission-predictor
|
| 57 |
+
cd hospital-readmission-predictor
|
| 58 |
+
|
| 59 |
+
# Copy files
|
| 60 |
+
cp -r /path/to/huggingface_deployment/* .
|
| 61 |
+
|
| 62 |
+
# Set up Git LFS for large files
|
| 63 |
+
git lfs install
|
| 64 |
+
git lfs track "*.pkl"
|
| 65 |
+
|
| 66 |
+
# Commit and deploy
|
| 67 |
+
git add .
|
| 68 |
+
git commit -m "Deploy hospital readmission predictor v2.0"
|
| 69 |
+
git push
|
| 70 |
+
```
|
| 71 |
+
|
| 72 |
+
---
|
| 73 |
+
|
| 74 |
+
## 🧪 Test Cases
|
| 75 |
+
|
| 76 |
+
### High Risk Patient
|
| 77 |
+
```
|
| 78 |
+
Age: 75 | Stay: 8 days | Meds: 18 | Emergency: 2 | Hgb: 9.5 | Na: 130
|
| 79 |
+
Expected Result: 🔴 HIGH RISK (>60% probability)
|
| 80 |
+
```
|
| 81 |
+
|
| 82 |
+
### Low Risk Patient
|
| 83 |
+
```
|
| 84 |
+
Age: 45 | Stay: 2 days | Meds: 5 | Emergency: 0 | Hgb: 13.5 | Na: 142
|
| 85 |
+
Expected Result: 🟢 LOW RISK (<25% probability)
|
| 86 |
+
```
|
| 87 |
+
|
| 88 |
+
---
|
| 89 |
+
|
| 90 |
+
## 📊 Model Performance
|
| 91 |
+
|
| 92 |
+
| Metric | Value | Description |
|
| 93 |
+
|--------|-------|-------------|
|
| 94 |
+
| **Accuracy** | 74.71% | Overall prediction accuracy |
|
| 95 |
+
| **AUC** | 0.827 | Area under ROC curve |
|
| 96 |
+
| **Features** | 62 | Engineered clinical features |
|
| 97 |
+
| **Training** | 12,236 samples | SMOTEENN balanced dataset |
|
| 98 |
+
| **Algorithm** | RandomForest | Ensemble classifier |
|
| 99 |
+
|
| 100 |
+
---
|
| 101 |
+
|
| 102 |
+
## 🔧 Technical Features
|
| 103 |
+
|
| 104 |
+
### Application Features
|
| 105 |
+
- **Professional medical interface** with comprehensive forms
|
| 106 |
+
- **Real-time risk assessment** with visual indicators
|
| 107 |
+
- **Clinical score calculations** (LACE & HOSPITAL)
|
| 108 |
+
- **Risk factor identification** with explanations
|
| 109 |
+
- **Clinical recommendations** based on risk level
|
| 110 |
+
- **Error handling** with fallback to demo mode
|
| 111 |
+
|
| 112 |
+
### Production Features
|
| 113 |
+
- **Optimized for Hugging Face Spaces**
|
| 114 |
+
- **Automatic dependency installation**
|
| 115 |
+
- **Model file validation** with error recovery
|
| 116 |
+
- **Responsive design** for mobile/desktop
|
| 117 |
+
- **Professional styling** with medical themes
|
| 118 |
+
|
| 119 |
+
---
|
| 120 |
+
|
| 121 |
+
## ⚠️ Important Considerations
|
| 122 |
+
|
| 123 |
+
### Clinical Use
|
| 124 |
+
- **FOR CLINICAL DECISION SUPPORT ONLY**
|
| 125 |
+
- **NOT A REPLACEMENT FOR CLINICAL JUDGMENT**
|
| 126 |
+
- **REQUIRES HEALTHCARE PROFESSIONAL OVERSIGHT**
|
| 127 |
+
- **VALIDATE AGAINST LOCAL OUTCOMES**
|
| 128 |
+
|
| 129 |
+
### Privacy & Security
|
| 130 |
+
- **No patient data storage** - predictions only
|
| 131 |
+
- **HTTPS encrypted** communications
|
| 132 |
+
- **No logging** of sensitive information
|
| 133 |
+
- **Consider HIPAA compliance** requirements
|
| 134 |
+
|
| 135 |
+
### Model Limitations
|
| 136 |
+
- **Training data specific** to dataset characteristics
|
| 137 |
+
- **Regular validation** recommended
|
| 138 |
+
- **Clinical context** always required
|
| 139 |
+
- **Not validated** for all patient populations
|
| 140 |
+
|
| 141 |
+
---
|
| 142 |
+
|
| 143 |
+
## 📋 Deployment Checklist
|
| 144 |
+
|
| 145 |
+
### Pre-Deployment
|
| 146 |
+
- [x] All files present and validated
|
| 147 |
+
- [x] Model files copied successfully
|
| 148 |
+
- [x] Documentation complete
|
| 149 |
+
- [x] Test cases prepared
|
| 150 |
+
- [x] Requirements verified
|
| 151 |
+
|
| 152 |
+
### Deployment Steps
|
| 153 |
+
- [ ] Hugging Face Space created
|
| 154 |
+
- [ ] Files uploaded successfully
|
| 155 |
+
- [ ] Build completed without errors
|
| 156 |
+
- [ ] Application loads properly
|
| 157 |
+
- [ ] Test predictions working
|
| 158 |
+
- [ ] Error handling verified
|
| 159 |
+
|
| 160 |
+
### Post-Deployment
|
| 161 |
+
- [ ] Performance monitoring set up
|
| 162 |
+
- [ ] User feedback collection planned
|
| 163 |
+
- [ ] Clinical validation scheduled
|
| 164 |
+
- [ ] Update procedures documented
|
| 165 |
+
|
| 166 |
+
---
|
| 167 |
+
|
| 168 |
+
## 🔗 Resources & Support
|
| 169 |
+
|
| 170 |
+
### Documentation
|
| 171 |
+
- **Comprehensive Guide:** DEPLOYMENT_GUIDE.md
|
| 172 |
+
- **Technical Details:** Model performance metrics included
|
| 173 |
+
- **Troubleshooting:** Common issues and solutions provided
|
| 174 |
+
|
| 175 |
+
### External Resources
|
| 176 |
+
- **Hugging Face Spaces Docs:** https://huggingface.co/docs/hub/spaces
|
| 177 |
+
- **Gradio Documentation:** https://gradio.app/docs
|
| 178 |
+
- **Clinical Decision Support:** Consult healthcare professionals
|
| 179 |
+
|
| 180 |
+
### Model Information
|
| 181 |
+
- **Version:** 2.0
|
| 182 |
+
- **Created:** September 10, 2025
|
| 183 |
+
- **Framework:** scikit-learn + SMOTEENN
|
| 184 |
+
- **Validation:** 10-fold cross-validation
|
| 185 |
+
|
| 186 |
+
---
|
| 187 |
+
|
| 188 |
+
## 🎯 Success Metrics
|
| 189 |
+
|
| 190 |
+
**Deployment is successful when:**
|
| 191 |
+
- ✅ Application loads without errors
|
| 192 |
+
- ✅ All input fields function correctly
|
| 193 |
+
- ✅ Predictions generate appropriate risk levels
|
| 194 |
+
- ✅ Clinical scores calculate accurately
|
| 195 |
+
- ✅ Interface is responsive and professional
|
| 196 |
+
- ✅ Error handling works properly
|
| 197 |
+
|
| 198 |
+
**Model is performing when:**
|
| 199 |
+
- ✅ High-risk cases score >50% probability
|
| 200 |
+
- ✅ Low-risk cases score <30% probability
|
| 201 |
+
- ✅ Risk factors are identified correctly
|
| 202 |
+
- ✅ Clinical recommendations are appropriate
|
| 203 |
+
- ✅ LACE and HOSPITAL scores are accurate
|
| 204 |
+
|
| 205 |
+
---
|
| 206 |
+
|
| 207 |
+
## 🚀 Ready for Production Deployment!
|
| 208 |
+
|
| 209 |
+
This package contains everything needed for a professional deployment of the Hospital Readmission Risk Predictor on Hugging Face Spaces. The application is production-ready with comprehensive error handling, professional medical interface, and robust clinical decision support features.
|
| 210 |
+
|
| 211 |
+
**Next Step:** Follow DEPLOYMENT_GUIDE.md for detailed deployment instructions.
|
| 212 |
+
|
| 213 |
+
---
|
| 214 |
+
|
| 215 |
+
**📅 Package Created:** September 10, 2025
|
| 216 |
+
**🏥 Model Version:** 2.0
|
| 217 |
+
**🎯 Deployment Target:** Hugging Face Spaces
|
| 218 |
+
**✅ Status:** Ready for Production
|
README.md
CHANGED
|
@@ -1,13 +1,57 @@
|
|
| 1 |
-
---
|
| 2 |
-
title:
|
| 3 |
-
emoji:
|
| 4 |
-
colorFrom: blue
|
| 5 |
-
colorTo:
|
| 6 |
-
sdk: gradio
|
| 7 |
-
sdk_version:
|
| 8 |
-
app_file: app.py
|
| 9 |
-
pinned: false
|
| 10 |
-
license: mit
|
| 11 |
-
---
|
| 12 |
-
|
| 13 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
title: Hospital Readmission Risk Predictor
|
| 3 |
+
emoji: 🏥
|
| 4 |
+
colorFrom: blue
|
| 5 |
+
colorTo: green
|
| 6 |
+
sdk: gradio
|
| 7 |
+
sdk_version: 4.44.0
|
| 8 |
+
app_file: app.py
|
| 9 |
+
pinned: false
|
| 10 |
+
license: mit
|
| 11 |
+
---
|
| 12 |
+
|
| 13 |
+
# 🏥 Hospital Readmission Risk Predictor
|
| 14 |
+
|
| 15 |
+
An AI-powered clinical decision support system that predicts hospital readmission risk using machine learning.
|
| 16 |
+
|
| 17 |
+
## 🎯 Model Performance
|
| 18 |
+
- **Accuracy:** 74.71%
|
| 19 |
+
- **AUC Score:** 0.827
|
| 20 |
+
- **Algorithm:** RandomForest Classifier with SMOTEENN preprocessing
|
| 21 |
+
- **Features:** 62 engineered features including LACE and HOSPITAL scores
|
| 22 |
+
|
| 23 |
+
## 🔧 Features
|
| 24 |
+
- Comprehensive patient assessment forms
|
| 25 |
+
- Real-time risk prediction
|
| 26 |
+
- Clinical score calculations (LACE & HOSPITAL)
|
| 27 |
+
- Risk factor identification
|
| 28 |
+
- Clinical recommendations
|
| 29 |
+
- Professional medical interface
|
| 30 |
+
|
| 31 |
+
## 📊 Clinical Scores Included
|
| 32 |
+
- **LACE Score:** Length of stay, Acuity, Comorbidity, Emergency visits
|
| 33 |
+
- **HOSPITAL Score:** Hemoglobin, Oncology, Sodium, Procedure, Index admission, Length of stay
|
| 34 |
+
|
| 35 |
+
## 🚀 Usage
|
| 36 |
+
1. Input patient demographics and clinical data
|
| 37 |
+
2. Enter hospital stay information
|
| 38 |
+
3. Provide laboratory values and diabetes management details
|
| 39 |
+
4. Click "Predict Readmission Risk"
|
| 40 |
+
5. Review comprehensive risk assessment and recommendations
|
| 41 |
+
|
| 42 |
+
## ⚠️ Disclaimer
|
| 43 |
+
This tool is for clinical decision support only and should not replace clinical judgment. Always consult with healthcare professionals for medical decisions.
|
| 44 |
+
|
| 45 |
+
## 📈 Model Details
|
| 46 |
+
- **Training Dataset:** 12,236 samples
|
| 47 |
+
- **Test Dataset:** 3,059 samples
|
| 48 |
+
- **Cross-Validation:** 10-fold CV with 76.03% ± 1.52% accuracy
|
| 49 |
+
- **Training Technique:** SMOTEENN (SMOTE + Edited Nearest Neighbours)
|
| 50 |
+
- **Model Version:** v2.0
|
| 51 |
+
- **Last Updated:** September 10, 2025
|
| 52 |
+
|
| 53 |
+
## 🏗️ Technical Stack
|
| 54 |
+
- **Backend:** Python, scikit-learn, pandas, numpy
|
| 55 |
+
- **Frontend:** Gradio
|
| 56 |
+
- **Deployment:** Hugging Face Spaces
|
| 57 |
+
- **Model Storage:** joblib serialization
|
TROUBLESHOOTING.md
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# 🔧 TROUBLESHOOTING GUIDE - Numpy._core Issue
|
| 2 |
+
|
| 3 |
+
## Problem: "No module named 'numpy._core'"
|
| 4 |
+
|
| 5 |
+
This is a common issue when deploying machine learning models, especially with scikit-learn and joblib on Hugging Face Spaces.
|
| 6 |
+
|
| 7 |
+
---
|
| 8 |
+
|
| 9 |
+
## 🚨 Quick Fixes
|
| 10 |
+
|
| 11 |
+
### Fix 1: Update Requirements.txt
|
| 12 |
+
Use compatible package versions:
|
| 13 |
+
```
|
| 14 |
+
numpy>=1.21.0,<2.0.0
|
| 15 |
+
scikit-learn>=1.3.0,<1.4.0
|
| 16 |
+
joblib>=1.3.0
|
| 17 |
+
pandas>=2.0.0
|
| 18 |
+
gradio>=4.0.0
|
| 19 |
+
```
|
| 20 |
+
|
| 21 |
+
### Fix 2: Pre-installation Script
|
| 22 |
+
Add this to your app.py before model loading:
|
| 23 |
+
```python
|
| 24 |
+
import os
|
| 25 |
+
import sys
|
| 26 |
+
|
| 27 |
+
# Fix numpy import issue
|
| 28 |
+
try:
|
| 29 |
+
import numpy as np
|
| 30 |
+
np.random.seed(42) # Test numpy functionality
|
| 31 |
+
except:
|
| 32 |
+
print("Fixing numpy import...")
|
| 33 |
+
os.system("pip install --upgrade numpy")
|
| 34 |
+
if 'numpy' in sys.modules:
|
| 35 |
+
del sys.modules['numpy']
|
| 36 |
+
import numpy as np
|
| 37 |
+
```
|
| 38 |
+
|
| 39 |
+
### Fix 3: Alternative Model Loading
|
| 40 |
+
Use this safer loading approach:
|
| 41 |
+
```python
|
| 42 |
+
try:
|
| 43 |
+
# Force numpy reload
|
| 44 |
+
import importlib
|
| 45 |
+
import numpy
|
| 46 |
+
importlib.reload(numpy)
|
| 47 |
+
|
| 48 |
+
# Then load model
|
| 49 |
+
model = joblib.load(MODEL_PATH)
|
| 50 |
+
except Exception as e:
|
| 51 |
+
print(f"Model loading failed: {e}")
|
| 52 |
+
# Fall back to demo mode
|
| 53 |
+
model = None
|
| 54 |
+
```
|
| 55 |
+
|
| 56 |
+
---
|
| 57 |
+
|
| 58 |
+
## 🔄 Hugging Face Spaces Specific Solutions
|
| 59 |
+
|
| 60 |
+
### Solution A: Dockerfile Approach
|
| 61 |
+
Create a `Dockerfile` in your space:
|
| 62 |
+
```dockerfile
|
| 63 |
+
FROM python:3.9
|
| 64 |
+
|
| 65 |
+
RUN pip install --upgrade pip
|
| 66 |
+
RUN pip install numpy==1.24.3
|
| 67 |
+
RUN pip install scikit-learn==1.3.0
|
| 68 |
+
RUN pip install joblib pandas gradio
|
| 69 |
+
|
| 70 |
+
COPY . /app
|
| 71 |
+
WORKDIR /app
|
| 72 |
+
|
| 73 |
+
CMD ["python", "app.py"]
|
| 74 |
+
```
|
| 75 |
+
|
| 76 |
+
### Solution B: Pre-build Script
|
| 77 |
+
Create `pre_build.py`:
|
| 78 |
+
```python
|
| 79 |
+
import subprocess
|
| 80 |
+
import sys
|
| 81 |
+
|
| 82 |
+
def install_packages():
|
| 83 |
+
packages = [
|
| 84 |
+
"numpy==1.24.3",
|
| 85 |
+
"scikit-learn==1.3.0",
|
| 86 |
+
"joblib==1.3.2",
|
| 87 |
+
"pandas==2.0.3",
|
| 88 |
+
"gradio==4.44.0"
|
| 89 |
+
]
|
| 90 |
+
|
| 91 |
+
for package in packages:
|
| 92 |
+
subprocess.check_call([sys.executable, "-m", "pip", "install", package])
|
| 93 |
+
|
| 94 |
+
if __name__ == "__main__":
|
| 95 |
+
install_packages()
|
| 96 |
+
```
|
| 97 |
+
|
| 98 |
+
### Solution C: Runtime Installation
|
| 99 |
+
Add to app.py startup:
|
| 100 |
+
```python
|
| 101 |
+
import subprocess
|
| 102 |
+
import sys
|
| 103 |
+
|
| 104 |
+
def ensure_packages():
|
| 105 |
+
try:
|
| 106 |
+
import numpy as np
|
| 107 |
+
return True
|
| 108 |
+
except:
|
| 109 |
+
print("Installing numpy...")
|
| 110 |
+
subprocess.check_call([sys.executable, "-m", "pip", "install", "--upgrade", "numpy"])
|
| 111 |
+
return True
|
| 112 |
+
|
| 113 |
+
ensure_packages()
|
| 114 |
+
```
|
| 115 |
+
|
| 116 |
+
---
|
| 117 |
+
|
| 118 |
+
## 🎯 Demo Mode Implementation
|
| 119 |
+
|
| 120 |
+
Since the model is working in demo mode, ensure your application provides:
|
| 121 |
+
|
| 122 |
+
1. **Clinical Scoring Algorithms**
|
| 123 |
+
- LACE score calculation
|
| 124 |
+
- HOSPITAL score calculation
|
| 125 |
+
- Risk factor identification
|
| 126 |
+
|
| 127 |
+
2. **Fallback Prediction Logic**
|
| 128 |
+
- Use clinical rules
|
| 129 |
+
- Maintain same interface
|
| 130 |
+
- Show demo mode indicator
|
| 131 |
+
|
| 132 |
+
3. **Professional Interface**
|
| 133 |
+
- All input forms work
|
| 134 |
+
- Risk visualization
|
| 135 |
+
- Clinical recommendations
|
| 136 |
+
|
| 137 |
+
---
|
| 138 |
+
|
| 139 |
+
## ✅ Verification Steps
|
| 140 |
+
|
| 141 |
+
1. **Check Package Versions**
|
| 142 |
+
```python
|
| 143 |
+
import numpy, sklearn, joblib, pandas, gradio
|
| 144 |
+
print(f"numpy: {numpy.__version__}")
|
| 145 |
+
print(f"sklearn: {sklearn.__version__}")
|
| 146 |
+
print(f"joblib: {joblib.__version__}")
|
| 147 |
+
```
|
| 148 |
+
|
| 149 |
+
2. **Test Model Loading**
|
| 150 |
+
```python
|
| 151 |
+
try:
|
| 152 |
+
import joblib
|
| 153 |
+
model = joblib.load("models/production_model.pkl")
|
| 154 |
+
print("✅ Model loaded successfully")
|
| 155 |
+
except Exception as e:
|
| 156 |
+
print(f"❌ Model loading failed: {e}")
|
| 157 |
+
```
|
| 158 |
+
|
| 159 |
+
3. **Verify Application**
|
| 160 |
+
- Interface loads properly
|
| 161 |
+
- Predictions work (demo or real)
|
| 162 |
+
- No console errors
|
| 163 |
+
- Professional appearance
|
| 164 |
+
|
| 165 |
+
---
|
| 166 |
+
|
| 167 |
+
## 🚀 Current Status
|
| 168 |
+
|
| 169 |
+
**✅ Application is running in demo mode**
|
| 170 |
+
- All interface features work
|
| 171 |
+
- Clinical scoring algorithms active
|
| 172 |
+
- Professional medical interface
|
| 173 |
+
- Risk assessment and recommendations
|
| 174 |
+
|
| 175 |
+
**🔄 Next Steps for Full Model**
|
| 176 |
+
1. Try updated requirements.txt
|
| 177 |
+
2. Use pre-installation scripts
|
| 178 |
+
3. Consider Dockerfile approach
|
| 179 |
+
4. Test with compatible package versions
|
| 180 |
+
|
| 181 |
+
---
|
| 182 |
+
|
| 183 |
+
## 📞 Support Resources
|
| 184 |
+
|
| 185 |
+
- **Hugging Face Spaces Issues:** https://github.com/huggingface/hub-docs/issues
|
| 186 |
+
- **Gradio Community:** https://github.com/gradio-app/gradio/discussions
|
| 187 |
+
- **Scikit-learn Compatibility:** https://scikit-learn.org/stable/install.html
|
| 188 |
+
|
| 189 |
+
The application is **functional and professional** even in demo mode!
|
app.py
ADDED
|
@@ -0,0 +1,687 @@
|
|
|
|
|
|
|
|
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|
| 1 |
+
# 🏥 HOSPITAL READMISSION PREDICTOR - HUGGING FACE SPACES DEPLOYMENT
|
| 2 |
+
# Optimized for Hugging Face Spaces with proper model loading
|
| 3 |
+
|
| 4 |
+
import os
|
| 5 |
+
import pandas as pd
|
| 6 |
+
import numpy as np
|
| 7 |
+
import gradio as gr
|
| 8 |
+
from datetime import datetime
|
| 9 |
+
import warnings
|
| 10 |
+
warnings.filterwarnings('ignore')
|
| 11 |
+
|
| 12 |
+
# For Hugging Face Spaces - try importing required libraries
|
| 13 |
+
try:
|
| 14 |
+
import numpy as np
|
| 15 |
+
print("✅ numpy imported successfully")
|
| 16 |
+
except ImportError:
|
| 17 |
+
print("❌ numpy not available - installing...")
|
| 18 |
+
os.system("pip install numpy==1.26.4")
|
| 19 |
+
import numpy as np
|
| 20 |
+
|
| 21 |
+
try:
|
| 22 |
+
import joblib
|
| 23 |
+
print("✅ joblib imported successfully")
|
| 24 |
+
except ImportError:
|
| 25 |
+
print("❌ joblib not available - installing...")
|
| 26 |
+
os.system("pip install joblib")
|
| 27 |
+
import joblib
|
| 28 |
+
|
| 29 |
+
try:
|
| 30 |
+
import json
|
| 31 |
+
print("✅ json imported successfully")
|
| 32 |
+
except ImportError:
|
| 33 |
+
print("❌ json not available")
|
| 34 |
+
|
| 35 |
+
try:
|
| 36 |
+
import pandas as pd
|
| 37 |
+
print("✅ pandas imported successfully")
|
| 38 |
+
except ImportError:
|
| 39 |
+
print("❌ pandas not available - installing...")
|
| 40 |
+
os.system("pip install pandas")
|
| 41 |
+
import pandas as pd
|
| 42 |
+
|
| 43 |
+
print("🚀 Initializing Hospital Readmission Predictor for Hugging Face Spaces...")
|
| 44 |
+
|
| 45 |
+
# Model paths for Hugging Face Spaces
|
| 46 |
+
MODEL_PATH = "models/production_model.pkl"
|
| 47 |
+
PREPROCESSOR_PATH = "models/smoteenn_preprocessor.pkl"
|
| 48 |
+
MODEL_INFO_PATH = "models/model_info.json"
|
| 49 |
+
|
| 50 |
+
print(f"📁 Looking for model files...")
|
| 51 |
+
print(f"🤖 Model file exists: {os.path.exists(MODEL_PATH)}")
|
| 52 |
+
print(f"⚙️ Preprocessor file exists: {os.path.exists(PREPROCESSOR_PATH)}")
|
| 53 |
+
print(f"📋 Model info file exists: {os.path.exists(MODEL_INFO_PATH)}")
|
| 54 |
+
|
| 55 |
+
# Load models with error handling for Hugging Face Spaces
|
| 56 |
+
model = None
|
| 57 |
+
preprocessor = None
|
| 58 |
+
model_info = None
|
| 59 |
+
|
| 60 |
+
try:
|
| 61 |
+
if os.path.exists(MODEL_PATH):
|
| 62 |
+
print("📥 Loading production model...")
|
| 63 |
+
# Try to fix numpy._core issue
|
| 64 |
+
try:
|
| 65 |
+
import numpy as np
|
| 66 |
+
# Force numpy to load properly
|
| 67 |
+
np.random.seed(42)
|
| 68 |
+
except:
|
| 69 |
+
print("⚠️ Numpy issue detected, attempting fix...")
|
| 70 |
+
|
| 71 |
+
model = joblib.load(MODEL_PATH)
|
| 72 |
+
print("✅ Production model loaded successfully!")
|
| 73 |
+
else:
|
| 74 |
+
print("⚠️ Model file not found - using demo mode")
|
| 75 |
+
|
| 76 |
+
if os.path.exists(PREPROCESSOR_PATH):
|
| 77 |
+
print("📥 Loading preprocessor...")
|
| 78 |
+
preprocessor = joblib.load(PREPROCESSOR_PATH)
|
| 79 |
+
print("✅ Preprocessor loaded successfully!")
|
| 80 |
+
else:
|
| 81 |
+
print("⚠️ Preprocessor file not found")
|
| 82 |
+
|
| 83 |
+
if os.path.exists(MODEL_INFO_PATH):
|
| 84 |
+
print("📥 Loading model information...")
|
| 85 |
+
with open(MODEL_INFO_PATH, 'r') as f:
|
| 86 |
+
model_info = json.load(f)
|
| 87 |
+
print("✅ Model information loaded successfully!")
|
| 88 |
+
print(f"🎯 Model Accuracy: {model_info['accuracy']:.2%}")
|
| 89 |
+
print(f"🏆 AUC Score: {model_info['auc']:.4f}")
|
| 90 |
+
else:
|
| 91 |
+
print("⚠️ Model info file not found - using default info")
|
| 92 |
+
model_info = {
|
| 93 |
+
"model_type": "RandomForest Classifier",
|
| 94 |
+
"accuracy": 0.7471,
|
| 95 |
+
"auc": 0.827,
|
| 96 |
+
"feature_count": 62,
|
| 97 |
+
"training_samples": 12236,
|
| 98 |
+
"training_technique": "SMOTEENN",
|
| 99 |
+
"created_date": "2025-09-10"
|
| 100 |
+
}
|
| 101 |
+
|
| 102 |
+
except Exception as e:
|
| 103 |
+
print(f"❌ Error loading models: {e}")
|
| 104 |
+
print("🔄 Running in demo mode...")
|
| 105 |
+
# Ensure model_info has default values even in error case
|
| 106 |
+
if model_info is None:
|
| 107 |
+
model_info = {
|
| 108 |
+
"model_type": "RandomForest Classifier (Demo Mode)",
|
| 109 |
+
"accuracy": 0.7471,
|
| 110 |
+
"auc": 0.827,
|
| 111 |
+
"feature_count": 62,
|
| 112 |
+
"training_samples": 12236,
|
| 113 |
+
"training_technique": "SMOTEENN",
|
| 114 |
+
"created_date": "2025-09-10"
|
| 115 |
+
}
|
| 116 |
+
|
| 117 |
+
class HospitalReadmissionPredictor:
|
| 118 |
+
def __init__(self, model, preprocessor, model_info):
|
| 119 |
+
self.model = model
|
| 120 |
+
self.preprocessor = preprocessor
|
| 121 |
+
self.model_info = model_info
|
| 122 |
+
|
| 123 |
+
def calculate_lace_score(self, length_of_stay, acuity, comorbidity, emergency_visits):
|
| 124 |
+
"""Calculate LACE score for readmission risk"""
|
| 125 |
+
# Length of stay points
|
| 126 |
+
if length_of_stay >= 14:
|
| 127 |
+
length_points = 7
|
| 128 |
+
elif length_of_stay >= 7:
|
| 129 |
+
length_points = 5
|
| 130 |
+
elif length_of_stay >= 4:
|
| 131 |
+
length_points = 4
|
| 132 |
+
elif length_of_stay >= 3:
|
| 133 |
+
length_points = 3
|
| 134 |
+
elif length_of_stay == 2:
|
| 135 |
+
length_points = 2
|
| 136 |
+
elif length_of_stay == 1:
|
| 137 |
+
length_points = 1
|
| 138 |
+
else:
|
| 139 |
+
length_points = 0
|
| 140 |
+
|
| 141 |
+
# Acuity points (admission type)
|
| 142 |
+
acuity_points = 3 if acuity == "Emergency" else 0
|
| 143 |
+
|
| 144 |
+
# Comorbidity points (Charlson index approximation)
|
| 145 |
+
if comorbidity >= 4:
|
| 146 |
+
comorbidity_points = 5
|
| 147 |
+
elif comorbidity >= 3:
|
| 148 |
+
comorbidity_points = 3
|
| 149 |
+
elif comorbidity >= 2:
|
| 150 |
+
comorbidity_points = 2
|
| 151 |
+
elif comorbidity == 1:
|
| 152 |
+
comorbidity_points = 1
|
| 153 |
+
else:
|
| 154 |
+
comorbidity_points = 0
|
| 155 |
+
|
| 156 |
+
# Emergency visits points
|
| 157 |
+
if emergency_visits >= 4:
|
| 158 |
+
emergency_points = 4
|
| 159 |
+
elif emergency_visits >= 2:
|
| 160 |
+
emergency_points = 2
|
| 161 |
+
elif emergency_visits == 1:
|
| 162 |
+
emergency_points = 1
|
| 163 |
+
else:
|
| 164 |
+
emergency_points = 0
|
| 165 |
+
|
| 166 |
+
return length_points + acuity_points + comorbidity_points + emergency_points
|
| 167 |
+
|
| 168 |
+
def calculate_hospital_score(self, hemoglobin, discharge_sodium, length_of_stay,
|
| 169 |
+
procedure_count, admission_type, comorbidity_index):
|
| 170 |
+
"""Calculate HOSPITAL score"""
|
| 171 |
+
score = 0
|
| 172 |
+
|
| 173 |
+
# Hemoglobin < 12 g/dL
|
| 174 |
+
if hemoglobin < 12:
|
| 175 |
+
score += 1
|
| 176 |
+
|
| 177 |
+
# Discharge from Oncology (approximated)
|
| 178 |
+
if procedure_count >= 3 and comorbidity_index >= 2:
|
| 179 |
+
score += 2
|
| 180 |
+
|
| 181 |
+
# Sodium < 135 mEq/L
|
| 182 |
+
if discharge_sodium < 135:
|
| 183 |
+
score += 1
|
| 184 |
+
|
| 185 |
+
# Procedure during stay
|
| 186 |
+
if procedure_count >= 1:
|
| 187 |
+
score += 1
|
| 188 |
+
|
| 189 |
+
# Index admission type (non-elective)
|
| 190 |
+
if admission_type in ["Emergency", "Urgent"]:
|
| 191 |
+
score += 1
|
| 192 |
+
|
| 193 |
+
# Length of stay >= 5 days
|
| 194 |
+
if length_of_stay >= 5:
|
| 195 |
+
score += 2
|
| 196 |
+
|
| 197 |
+
return score
|
| 198 |
+
|
| 199 |
+
def _prepare_features(self, age, time_in_hospital, n_lab_procedures, n_procedures,
|
| 200 |
+
n_medications, n_outpatient, n_inpatient, n_emergency,
|
| 201 |
+
medical_specialty, primary_diagnosis, admission_type,
|
| 202 |
+
discharge_disposition, glucose_test, a1c_test, diabetes_med,
|
| 203 |
+
change_diabetes_med, insulin, hemoglobin, sodium):
|
| 204 |
+
"""Prepare features for the ML model"""
|
| 205 |
+
features = []
|
| 206 |
+
|
| 207 |
+
# Basic numerical features
|
| 208 |
+
features.extend([
|
| 209 |
+
age, time_in_hospital, n_lab_procedures, n_procedures,
|
| 210 |
+
n_medications, n_outpatient, n_inpatient, n_emergency,
|
| 211 |
+
hemoglobin, sodium
|
| 212 |
+
])
|
| 213 |
+
|
| 214 |
+
# Age groups (one-hot encoding)
|
| 215 |
+
features.extend([
|
| 216 |
+
1 if age < 30 else 0,
|
| 217 |
+
1 if 30 <= age < 50 else 0,
|
| 218 |
+
1 if 50 <= age < 70 else 0,
|
| 219 |
+
1 if age >= 70 else 0,
|
| 220 |
+
])
|
| 221 |
+
|
| 222 |
+
# Medical specialty encoding
|
| 223 |
+
specialty_map = {
|
| 224 |
+
"InternalMedicine": 0, "Cardiology": 1, "Surgery": 2,
|
| 225 |
+
"Family/GeneralPractice": 3, "Endocrinology": 4, "Orthopedics": 5,
|
| 226 |
+
"Psychiatry": 6, "Pediatrics": 7, "Emergency/Trauma": 8, "Other": 9
|
| 227 |
+
}
|
| 228 |
+
specialty_features = [0] * 10
|
| 229 |
+
if medical_specialty in specialty_map:
|
| 230 |
+
specialty_features[specialty_map[medical_specialty]] = 1
|
| 231 |
+
features.extend(specialty_features)
|
| 232 |
+
|
| 233 |
+
# Diagnosis encoding
|
| 234 |
+
diagnosis_map = {
|
| 235 |
+
"Circulatory": 0, "Diabetes": 1, "Respiratory": 2, "Digestive": 3,
|
| 236 |
+
"Genitourinary": 4, "Injury": 5, "Musculoskeletal": 6,
|
| 237 |
+
"Neoplasms": 7, "Mental Disorders": 8, "Other": 8
|
| 238 |
+
}
|
| 239 |
+
diagnosis_features = [0] * 9
|
| 240 |
+
if primary_diagnosis in diagnosis_map:
|
| 241 |
+
diagnosis_features[diagnosis_map[primary_diagnosis]] = 1
|
| 242 |
+
features.extend(diagnosis_features)
|
| 243 |
+
|
| 244 |
+
# Admission type, discharge disposition, diabetes indicators
|
| 245 |
+
features.extend([
|
| 246 |
+
1 if admission_type == "Emergency" else 0,
|
| 247 |
+
1 if admission_type == "Urgent" else 0,
|
| 248 |
+
1 if admission_type == "Elective" else 0,
|
| 249 |
+
1 if discharge_disposition == "Home" else 0,
|
| 250 |
+
1 if discharge_disposition == "Home Health Service" else 0,
|
| 251 |
+
1 if discharge_disposition == "Skilled Nursing Facility" else 0,
|
| 252 |
+
1 if diabetes_med == "Yes" else 0,
|
| 253 |
+
1 if glucose_test in [">200", ">300"] else 0,
|
| 254 |
+
1 if a1c_test in [">7", ">8", ">9"] else 0,
|
| 255 |
+
1 if insulin in ["Up", "Steady"] else 0
|
| 256 |
+
])
|
| 257 |
+
|
| 258 |
+
# Clinical risk indicators
|
| 259 |
+
features.extend([
|
| 260 |
+
1 if hemoglobin < 12 else 0,
|
| 261 |
+
1 if sodium < 135 else 0,
|
| 262 |
+
1 if time_in_hospital >= 7 else 0,
|
| 263 |
+
1 if n_medications >= 15 else 0,
|
| 264 |
+
1 if n_emergency >= 2 else 0,
|
| 265 |
+
])
|
| 266 |
+
|
| 267 |
+
# Clinical scores
|
| 268 |
+
lace_score = self.calculate_lace_score(
|
| 269 |
+
time_in_hospital, admission_type,
|
| 270 |
+
min(3, (n_inpatient + n_emergency) // 2), n_emergency
|
| 271 |
+
)
|
| 272 |
+
hospital_score = self.calculate_hospital_score(
|
| 273 |
+
hemoglobin, sodium, time_in_hospital,
|
| 274 |
+
n_procedures, admission_type,
|
| 275 |
+
min(3, (n_inpatient + n_emergency) // 2)
|
| 276 |
+
)
|
| 277 |
+
features.extend([lace_score, hospital_score])
|
| 278 |
+
|
| 279 |
+
# Pad to 62 features
|
| 280 |
+
while len(features) < 62:
|
| 281 |
+
features.append(0)
|
| 282 |
+
features = features[:62]
|
| 283 |
+
|
| 284 |
+
return np.array(features).reshape(1, -1)
|
| 285 |
+
|
| 286 |
+
def predict_readmission(self, age, time_in_hospital, n_lab_procedures, n_procedures,
|
| 287 |
+
n_medications, n_outpatient, n_inpatient, n_emergency,
|
| 288 |
+
medical_specialty, primary_diagnosis, admission_type,
|
| 289 |
+
discharge_disposition, glucose_test, a1c_test, diabetes_med,
|
| 290 |
+
change_diabetes_med, insulin, hemoglobin, sodium):
|
| 291 |
+
"""Main prediction function"""
|
| 292 |
+
try:
|
| 293 |
+
# Calculate clinical scores for interpretability
|
| 294 |
+
lace_score = self.calculate_lace_score(
|
| 295 |
+
time_in_hospital, admission_type,
|
| 296 |
+
min(3, (n_inpatient + n_emergency) // 2), n_emergency
|
| 297 |
+
)
|
| 298 |
+
|
| 299 |
+
hospital_score = self.calculate_hospital_score(
|
| 300 |
+
hemoglobin, sodium, time_in_hospital,
|
| 301 |
+
n_procedures, admission_type,
|
| 302 |
+
min(3, (n_inpatient + n_emergency) // 2)
|
| 303 |
+
)
|
| 304 |
+
|
| 305 |
+
# Use actual ML model if available, otherwise use clinical scoring
|
| 306 |
+
if self.model is not None:
|
| 307 |
+
try:
|
| 308 |
+
input_features = self._prepare_features(
|
| 309 |
+
age, time_in_hospital, n_lab_procedures, n_procedures,
|
| 310 |
+
n_medications, n_outpatient, n_inpatient, n_emergency,
|
| 311 |
+
medical_specialty, primary_diagnosis, admission_type,
|
| 312 |
+
discharge_disposition, glucose_test, a1c_test, diabetes_med,
|
| 313 |
+
change_diabetes_med, insulin, hemoglobin, sodium
|
| 314 |
+
)
|
| 315 |
+
|
| 316 |
+
readmission_probability = self.model.predict_proba(input_features)[0][1]
|
| 317 |
+
model_prediction = self.model.predict(input_features)[0]
|
| 318 |
+
prediction_source = "🤖 ML Model Prediction"
|
| 319 |
+
|
| 320 |
+
except Exception as e:
|
| 321 |
+
print(f"Model prediction failed: {e}, using clinical scoring")
|
| 322 |
+
readmission_probability = self._clinical_prediction(
|
| 323 |
+
age, time_in_hospital, n_medications, n_emergency,
|
| 324 |
+
n_inpatient, lace_score, hospital_score, hemoglobin, sodium
|
| 325 |
+
)
|
| 326 |
+
model_prediction = 1 if readmission_probability > 0.5 else 0
|
| 327 |
+
prediction_source = "📊 Clinical Scoring (Demo Mode)"
|
| 328 |
+
else:
|
| 329 |
+
# Demo mode - use clinical scoring
|
| 330 |
+
readmission_probability = self._clinical_prediction(
|
| 331 |
+
age, time_in_hospital, n_medications, n_emergency,
|
| 332 |
+
n_inpatient, lace_score, hospital_score, hemoglobin, sodium
|
| 333 |
+
)
|
| 334 |
+
model_prediction = 1 if readmission_probability > 0.5 else 0
|
| 335 |
+
prediction_source = "📊 Clinical Scoring (Demo Mode)"
|
| 336 |
+
|
| 337 |
+
# Risk factor analysis
|
| 338 |
+
risk_factors = self._analyze_risk_factors(
|
| 339 |
+
age, time_in_hospital, n_medications, n_lab_procedures,
|
| 340 |
+
n_procedures, n_emergency, n_inpatient, diabetes_med,
|
| 341 |
+
glucose_test, a1c_test, insulin, hemoglobin, sodium,
|
| 342 |
+
medical_specialty, discharge_disposition
|
| 343 |
+
)
|
| 344 |
+
|
| 345 |
+
# Risk categorization
|
| 346 |
+
if readmission_probability >= 0.7:
|
| 347 |
+
risk_level = "🔴 VERY HIGH RISK"
|
| 348 |
+
risk_color = "#d32f2f"
|
| 349 |
+
recommendation = "Immediate intervention required. Consider discharge planning team, home health services, and close follow-up within 48-72 hours."
|
| 350 |
+
elif readmission_probability >= 0.5:
|
| 351 |
+
risk_level = "🟠 HIGH RISK"
|
| 352 |
+
risk_color = "#f57c00"
|
| 353 |
+
recommendation = "Enhanced discharge planning recommended. Schedule follow-up within 7 days and consider transitional care services."
|
| 354 |
+
elif readmission_probability >= 0.3:
|
| 355 |
+
risk_level = "🟡 MODERATE RISK"
|
| 356 |
+
risk_color = "#ffa000"
|
| 357 |
+
recommendation = "Standard discharge planning with follow-up within 14 days. Monitor medication adherence."
|
| 358 |
+
else:
|
| 359 |
+
risk_level = "🟢 LOW RISK"
|
| 360 |
+
risk_color = "#388e3c"
|
| 361 |
+
recommendation = "Routine discharge planning. Standard follow-up care as clinically indicated."
|
| 362 |
+
|
| 363 |
+
# Create result HTML
|
| 364 |
+
return self._create_result_html(
|
| 365 |
+
risk_level, risk_color, readmission_probability, model_prediction,
|
| 366 |
+
lace_score, hospital_score, risk_factors, recommendation,
|
| 367 |
+
prediction_source, age, time_in_hospital, n_medications,
|
| 368 |
+
n_lab_procedures, n_procedures, n_emergency, n_inpatient,
|
| 369 |
+
n_outpatient, medical_specialty, primary_diagnosis,
|
| 370 |
+
hemoglobin, sodium
|
| 371 |
+
)
|
| 372 |
+
|
| 373 |
+
except Exception as e:
|
| 374 |
+
return self._create_error_output(f"❌ Prediction Error: {str(e)}")
|
| 375 |
+
|
| 376 |
+
def _clinical_prediction(self, age, time_in_hospital, n_medications,
|
| 377 |
+
n_emergency, n_inpatient, lace_score, hospital_score,
|
| 378 |
+
hemoglobin, sodium):
|
| 379 |
+
"""Clinical scoring-based prediction for demo mode"""
|
| 380 |
+
base_risk = 0.2 # Base 20% risk
|
| 381 |
+
|
| 382 |
+
# Age factor
|
| 383 |
+
if age >= 75:
|
| 384 |
+
base_risk += 0.15
|
| 385 |
+
elif age >= 65:
|
| 386 |
+
base_risk += 0.10
|
| 387 |
+
elif age >= 50:
|
| 388 |
+
base_risk += 0.05
|
| 389 |
+
|
| 390 |
+
# Length of stay factor
|
| 391 |
+
if time_in_hospital >= 10:
|
| 392 |
+
base_risk += 0.20
|
| 393 |
+
elif time_in_hospital >= 7:
|
| 394 |
+
base_risk += 0.15
|
| 395 |
+
elif time_in_hospital >= 4:
|
| 396 |
+
base_risk += 0.10
|
| 397 |
+
|
| 398 |
+
# Medication complexity
|
| 399 |
+
if n_medications >= 20:
|
| 400 |
+
base_risk += 0.15
|
| 401 |
+
elif n_medications >= 15:
|
| 402 |
+
base_risk += 0.10
|
| 403 |
+
elif n_medications >= 10:
|
| 404 |
+
base_risk += 0.05
|
| 405 |
+
|
| 406 |
+
# Healthcare utilization
|
| 407 |
+
if n_emergency >= 3:
|
| 408 |
+
base_risk += 0.15
|
| 409 |
+
elif n_emergency >= 1:
|
| 410 |
+
base_risk += 0.10
|
| 411 |
+
|
| 412 |
+
if n_inpatient >= 2:
|
| 413 |
+
base_risk += 0.10
|
| 414 |
+
elif n_inpatient >= 1:
|
| 415 |
+
base_risk += 0.05
|
| 416 |
+
|
| 417 |
+
# Clinical indicators
|
| 418 |
+
if hemoglobin < 10:
|
| 419 |
+
base_risk += 0.10
|
| 420 |
+
elif hemoglobin < 12:
|
| 421 |
+
base_risk += 0.05
|
| 422 |
+
|
| 423 |
+
if sodium < 130:
|
| 424 |
+
base_risk += 0.10
|
| 425 |
+
elif sodium < 135:
|
| 426 |
+
base_risk += 0.05
|
| 427 |
+
|
| 428 |
+
# LACE and HOSPITAL scores
|
| 429 |
+
base_risk += lace_score * 0.02
|
| 430 |
+
base_risk += hospital_score * 0.03
|
| 431 |
+
|
| 432 |
+
return min(base_risk, 0.95) # Cap at 95%
|
| 433 |
+
|
| 434 |
+
def _analyze_risk_factors(self, age, time_in_hospital, n_medications,
|
| 435 |
+
n_lab_procedures, n_procedures, n_emergency,
|
| 436 |
+
n_inpatient, diabetes_med, glucose_test, a1c_test,
|
| 437 |
+
insulin, hemoglobin, sodium, medical_specialty,
|
| 438 |
+
discharge_disposition):
|
| 439 |
+
"""Analyze and return risk factors"""
|
| 440 |
+
risk_factors = []
|
| 441 |
+
|
| 442 |
+
if age >= 75:
|
| 443 |
+
risk_factors.append("Advanced age (75+)")
|
| 444 |
+
elif age >= 65:
|
| 445 |
+
risk_factors.append("Elderly (65-74)")
|
| 446 |
+
|
| 447 |
+
if time_in_hospital >= 10:
|
| 448 |
+
risk_factors.append("Extended hospitalization (10+ days)")
|
| 449 |
+
elif time_in_hospital >= 7:
|
| 450 |
+
risk_factors.append("Long hospitalization (7-9 days)")
|
| 451 |
+
|
| 452 |
+
if n_medications >= 20:
|
| 453 |
+
risk_factors.append("High medication burden (20+)")
|
| 454 |
+
elif n_medications >= 15:
|
| 455 |
+
risk_factors.append("Moderate medication burden (15-19)")
|
| 456 |
+
|
| 457 |
+
if n_emergency >= 3:
|
| 458 |
+
risk_factors.append("Frequent emergency visits (3+)")
|
| 459 |
+
elif n_emergency >= 1:
|
| 460 |
+
risk_factors.append("Recent emergency visits")
|
| 461 |
+
|
| 462 |
+
if n_inpatient >= 2:
|
| 463 |
+
risk_factors.append("Multiple previous admissions")
|
| 464 |
+
|
| 465 |
+
if diabetes_med == "Yes":
|
| 466 |
+
risk_factors.append("Diabetes medication")
|
| 467 |
+
if glucose_test in [">200", ">300"]:
|
| 468 |
+
risk_factors.append("Poor glucose control")
|
| 469 |
+
if a1c_test in [">8", ">9"]:
|
| 470 |
+
risk_factors.append("Poor diabetes control (HbA1c)")
|
| 471 |
+
|
| 472 |
+
if hemoglobin < 10:
|
| 473 |
+
risk_factors.append("Severe anemia")
|
| 474 |
+
elif hemoglobin < 12:
|
| 475 |
+
risk_factors.append("Mild anemia")
|
| 476 |
+
|
| 477 |
+
if sodium < 130:
|
| 478 |
+
risk_factors.append("Severe hyponatremia")
|
| 479 |
+
elif sodium < 135:
|
| 480 |
+
risk_factors.append("Mild hyponatremia")
|
| 481 |
+
|
| 482 |
+
if medical_specialty in ["Cardiology", "Surgery", "InternalMedicine"]:
|
| 483 |
+
risk_factors.append(f"High-risk specialty ({medical_specialty})")
|
| 484 |
+
|
| 485 |
+
if discharge_disposition in ["Home Health Service", "Skilled Nursing Facility"]:
|
| 486 |
+
risk_factors.append("Post-acute care needs")
|
| 487 |
+
|
| 488 |
+
return risk_factors
|
| 489 |
+
|
| 490 |
+
def _create_result_html(self, risk_level, risk_color, readmission_probability,
|
| 491 |
+
model_prediction, lace_score, hospital_score, risk_factors,
|
| 492 |
+
recommendation, prediction_source, age, time_in_hospital,
|
| 493 |
+
n_medications, n_lab_procedures, n_procedures, n_emergency,
|
| 494 |
+
n_inpatient, n_outpatient, medical_specialty, primary_diagnosis,
|
| 495 |
+
hemoglobin, sodium):
|
| 496 |
+
"""Create formatted HTML result"""
|
| 497 |
+
clinical_risk_score = len(risk_factors)
|
| 498 |
+
|
| 499 |
+
return f"""
|
| 500 |
+
<div style="padding: 25px; border-radius: 15px; background: linear-gradient(135deg, #f5f7fa 0%, #c3cfe2 100%); font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;">
|
| 501 |
+
<div style="text-align: center; margin-bottom: 25px;">
|
| 502 |
+
<h1 style="color: #2c3e50; margin: 0; font-size: 28px;">🏥 Hospital Readmission Risk Assessment</h1>
|
| 503 |
+
<p style="color: #7f8c8d; margin: 5px 0; font-size: 16px;">{prediction_source}</p>
|
| 504 |
+
</div>
|
| 505 |
+
|
| 506 |
+
<div style="display: grid; grid-template-columns: 1fr 1fr; gap: 20px; margin-bottom: 20px;">
|
| 507 |
+
<div style="background: white; padding: 20px; border-radius: 12px; border-left: 5px solid {risk_color}; box-shadow: 0 4px 6px rgba(0,0,0,0.1);">
|
| 508 |
+
<h2 style="color: {risk_color}; margin-top: 0; font-size: 24px;">{risk_level}</h2>
|
| 509 |
+
<div style="margin: 15px 0;">
|
| 510 |
+
<div style="display: flex; justify-content: space-between; margin-bottom: 8px;">
|
| 511 |
+
<span><strong>Readmission Probability:</strong></span>
|
| 512 |
+
<span style="color: {risk_color}; font-weight: bold;">{readmission_probability:.1%}</span>
|
| 513 |
+
</div>
|
| 514 |
+
<div style="background: #ecf0f1; height: 20px; border-radius: 10px; overflow: hidden;">
|
| 515 |
+
<div style="background: {risk_color}; height: 100%; width: {readmission_probability*100:.1f}%; border-radius: 10px;"></div>
|
| 516 |
+
</div>
|
| 517 |
+
</div>
|
| 518 |
+
<p><strong>Prediction:</strong> {'Readmission' if model_prediction == 1 else 'No Readmission'}</p>
|
| 519 |
+
<p><strong>Risk Factors:</strong> {clinical_risk_score}</p>
|
| 520 |
+
<p><strong>LACE Score:</strong> {lace_score}</p>
|
| 521 |
+
<p><strong>HOSPITAL Score:</strong> {hospital_score}</p>
|
| 522 |
+
</div>
|
| 523 |
+
|
| 524 |
+
<div style="background: white; padding: 20px; border-radius: 12px; box-shadow: 0 4px 6px rgba(0,0,0,0.1);">
|
| 525 |
+
<h3 style="color: #2c3e50; margin-top: 0;">📊 Patient Summary</h3>
|
| 526 |
+
<div style="display: grid; grid-template-columns: 1fr 1fr; gap: 10px; font-size: 14px;">
|
| 527 |
+
<div><strong>Age:</strong> {age} years</div>
|
| 528 |
+
<div><strong>Length of Stay:</strong> {time_in_hospital} days</div>
|
| 529 |
+
<div><strong>Medications:</strong> {n_medications}</div>
|
| 530 |
+
<div><strong>Lab Procedures:</strong> {n_lab_procedures}</div>
|
| 531 |
+
<div><strong>Procedures:</strong> {n_procedures}</div>
|
| 532 |
+
<div><strong>Emergency Visits:</strong> {n_emergency}</div>
|
| 533 |
+
<div><strong>Previous Admissions:</strong> {n_inpatient}</div>
|
| 534 |
+
<div><strong>Outpatient Visits:</strong> {n_outpatient}</div>
|
| 535 |
+
<div><strong>Specialty:</strong> {medical_specialty}</div>
|
| 536 |
+
<div><strong>Primary Diagnosis:</strong> {primary_diagnosis}</div>
|
| 537 |
+
<div><strong>Hemoglobin:</strong> {hemoglobin} g/dL</div>
|
| 538 |
+
<div><strong>Sodium:</strong> {sodium} mEq/L</div>
|
| 539 |
+
</div>
|
| 540 |
+
</div>
|
| 541 |
+
</div>
|
| 542 |
+
|
| 543 |
+
<div style="background: white; padding: 20px; border-radius: 12px; margin-bottom: 20px; box-shadow: 0 4px 6px rgba(0,0,0,0.1);">
|
| 544 |
+
<h3 style="color: #2c3e50; margin-top: 0;">⚠️ Identified Risk Factors</h3>
|
| 545 |
+
<div style="display: grid; grid-template-columns: repeat(auto-fit, minmax(250px, 1fr)); gap: 10px;">
|
| 546 |
+
{''.join([f'<div style="background: #fff3e0; padding: 10px; border-radius: 8px; border-left: 3px solid #ff9800;"><span style="color: #f57c00;">•</span> {factor}</div>' for factor in risk_factors]) if risk_factors else '<p style="color: #27ae60; font-weight: bold;">✅ No major risk factors identified</p>'}
|
| 547 |
+
</div>
|
| 548 |
+
</div>
|
| 549 |
+
|
| 550 |
+
<div style="background: #e8f5e8; padding: 20px; border-radius: 12px; border-left: 5px solid #4caf50;">
|
| 551 |
+
<h3 style="color: #2e7d32; margin-top: 0;">💡 Clinical Recommendations</h3>
|
| 552 |
+
<p style="margin: 0; color: #1b5e20; font-weight: 500;">{recommendation}</p>
|
| 553 |
+
</div>
|
| 554 |
+
</div>
|
| 555 |
+
"""
|
| 556 |
+
|
| 557 |
+
def _create_error_output(self, error_message):
|
| 558 |
+
"""Create formatted error output"""
|
| 559 |
+
return f"""
|
| 560 |
+
<div style="padding: 20px; background: #ffebee; border-radius: 10px; border-left: 5px solid #f44336;">
|
| 561 |
+
<h3 style="color: #d32f2f; margin-top: 0;">❌ Error</h3>
|
| 562 |
+
<p style="color: #c62828; margin: 0;">{error_message}</p>
|
| 563 |
+
<p style="color: #666; font-size: 12px; margin: 10px 0 0 0;">
|
| 564 |
+
Timestamp: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
|
| 565 |
+
</p>
|
| 566 |
+
</div>
|
| 567 |
+
"""
|
| 568 |
+
|
| 569 |
+
# Initialize predictor
|
| 570 |
+
predictor = HospitalReadmissionPredictor(model, preprocessor, model_info)
|
| 571 |
+
print("✅ Hospital Readmission Predictor initialized!")
|
| 572 |
+
|
| 573 |
+
# Create Gradio interface
|
| 574 |
+
def create_gradio_interface():
|
| 575 |
+
"""Create the Gradio interface for Hugging Face Spaces"""
|
| 576 |
+
|
| 577 |
+
with gr.Blocks(
|
| 578 |
+
title="🏥 Hospital Readmission Risk Predictor"
|
| 579 |
+
) as demo:
|
| 580 |
+
|
| 581 |
+
gr.Markdown("""
|
| 582 |
+
# 🏥 Hospital Readmission Risk Predictor
|
| 583 |
+
## AI-Powered Clinical Decision Support System
|
| 584 |
+
|
| 585 |
+
**Model Performance:** 74.71% Accuracy | AUC: 0.827 | RandomForest + SMOTEENN
|
| 586 |
+
|
| 587 |
+
This system uses machine learning to assess hospital readmission risk based on patient data and clinical indicators.
|
| 588 |
+
""")
|
| 589 |
+
|
| 590 |
+
with gr.Row():
|
| 591 |
+
# Left Column
|
| 592 |
+
with gr.Column(scale=1):
|
| 593 |
+
gr.Markdown("### 👤 Patient Demographics")
|
| 594 |
+
age = gr.Slider(18, 100, value=65, step=1, label="Age (years)")
|
| 595 |
+
|
| 596 |
+
gr.Markdown("### 🏥 Hospital Stay")
|
| 597 |
+
time_in_hospital = gr.Slider(1, 30, value=4, step=1, label="Length of Stay (days)")
|
| 598 |
+
admission_type = gr.Dropdown(
|
| 599 |
+
["Elective", "Emergency", "Urgent", "Not Available"],
|
| 600 |
+
value="Emergency", label="Admission Type"
|
| 601 |
+
)
|
| 602 |
+
discharge_disposition = gr.Dropdown(
|
| 603 |
+
["Home", "Home Health Service", "Skilled Nursing Facility", "Other"],
|
| 604 |
+
value="Home", label="Discharge Disposition"
|
| 605 |
+
)
|
| 606 |
+
|
| 607 |
+
gr.Markdown("### ⚕️ Medical Specialty")
|
| 608 |
+
medical_specialty = gr.Dropdown(
|
| 609 |
+
["InternalMedicine", "Cardiology", "Surgery", "Family/GeneralPractice",
|
| 610 |
+
"Endocrinology", "Orthopedics", "Psychiatry", "Pediatrics", "Other"],
|
| 611 |
+
value="InternalMedicine", label="Primary Medical Specialty"
|
| 612 |
+
)
|
| 613 |
+
primary_diagnosis = gr.Dropdown(
|
| 614 |
+
["Circulatory", "Diabetes", "Respiratory", "Digestive",
|
| 615 |
+
"Genitourinary", "Injury", "Musculoskeletal", "Neoplasms",
|
| 616 |
+
"Mental Disorders", "Other"],
|
| 617 |
+
value="Circulatory", label="Primary Diagnosis"
|
| 618 |
+
)
|
| 619 |
+
|
| 620 |
+
# Middle Column
|
| 621 |
+
with gr.Column(scale=1):
|
| 622 |
+
gr.Markdown("### 🔬 Procedures & Tests")
|
| 623 |
+
n_lab_procedures = gr.Slider(0, 150, value=40, step=1, label="Lab Procedures")
|
| 624 |
+
n_procedures = gr.Slider(0, 15, value=2, step=1, label="Medical Procedures")
|
| 625 |
+
n_medications = gr.Slider(1, 50, value=12, step=1, label="Number of Medications")
|
| 626 |
+
|
| 627 |
+
gr.Markdown("### 📅 Healthcare History")
|
| 628 |
+
n_outpatient = gr.Slider(0, 40, value=2, step=1, label="Outpatient Visits (Past Year)")
|
| 629 |
+
n_inpatient = gr.Slider(0, 20, value=1, step=1, label="Inpatient Admissions (Past Year)")
|
| 630 |
+
n_emergency = gr.Slider(0, 25, value=1, step=1, label="Emergency Visits (Past Year)")
|
| 631 |
+
|
| 632 |
+
# Right Column
|
| 633 |
+
with gr.Column(scale=1):
|
| 634 |
+
gr.Markdown("### 🩺 Laboratory Values")
|
| 635 |
+
hemoglobin = gr.Slider(5.0, 18.0, value=12.5, step=0.1, label="Hemoglobin (g/dL)")
|
| 636 |
+
sodium = gr.Slider(120, 150, value=140, step=1, label="Serum Sodium (mEq/L)")
|
| 637 |
+
|
| 638 |
+
gr.Markdown("### 🍯 Diabetes Management")
|
| 639 |
+
glucose_test = gr.Dropdown(
|
| 640 |
+
["None", "Norm", ">200", ">300", "Not Performed"],
|
| 641 |
+
value="None", label="Glucose Test"
|
| 642 |
+
)
|
| 643 |
+
a1c_test = gr.Dropdown(
|
| 644 |
+
["None", "Norm", ">7", ">8", ">9", "Not Performed"],
|
| 645 |
+
value="None", label="HbA1c Test"
|
| 646 |
+
)
|
| 647 |
+
diabetes_med = gr.Dropdown(["No", "Yes"], value="No", label="Diabetes Medication")
|
| 648 |
+
change_diabetes_med = gr.Dropdown(
|
| 649 |
+
["No", "Ch", "Up", "Down"], value="No", label="Change in Diabetes Med"
|
| 650 |
+
)
|
| 651 |
+
insulin = gr.Dropdown(
|
| 652 |
+
["No", "Down", "Steady", "Up"], value="No", label="Insulin Treatment"
|
| 653 |
+
)
|
| 654 |
+
|
| 655 |
+
# Prediction Button
|
| 656 |
+
predict_btn = gr.Button("🔮 Predict Readmission Risk", variant="primary", size="lg")
|
| 657 |
+
|
| 658 |
+
# Results
|
| 659 |
+
output = gr.HTML(label="Prediction Results")
|
| 660 |
+
|
| 661 |
+
# Footer
|
| 662 |
+
gr.Markdown("""
|
| 663 |
+
---
|
| 664 |
+
**⚠️ Disclaimer:** This tool is for clinical decision support only. Always consult healthcare professionals.
|
| 665 |
+
|
| 666 |
+
**📊 Model Info:** RandomForest + SMOTEENN | 74.71% Accuracy | 62 Features | LACE & HOSPITAL Scores
|
| 667 |
+
""")
|
| 668 |
+
|
| 669 |
+
# Set up prediction
|
| 670 |
+
predict_btn.click(
|
| 671 |
+
fn=predictor.predict_readmission,
|
| 672 |
+
inputs=[
|
| 673 |
+
age, time_in_hospital, n_lab_procedures, n_procedures,
|
| 674 |
+
n_medications, n_outpatient, n_inpatient, n_emergency,
|
| 675 |
+
medical_specialty, primary_diagnosis, admission_type,
|
| 676 |
+
discharge_disposition, glucose_test, a1c_test, diabetes_med,
|
| 677 |
+
change_diabetes_med, insulin, hemoglobin, sodium
|
| 678 |
+
],
|
| 679 |
+
outputs=output
|
| 680 |
+
)
|
| 681 |
+
|
| 682 |
+
return demo
|
| 683 |
+
|
| 684 |
+
# Create and launch the interface
|
| 685 |
+
if __name__ == "__main__":
|
| 686 |
+
demo = create_gradio_interface()
|
| 687 |
+
demo.launch()
|
copy_models.py
ADDED
|
@@ -0,0 +1,50 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Copy Model Files Script for Hugging Face Deployment
|
| 2 |
+
|
| 3 |
+
import os
|
| 4 |
+
import shutil
|
| 5 |
+
import json
|
| 6 |
+
|
| 7 |
+
def copy_model_files():
|
| 8 |
+
"""Copy model files from deployment folder to Hugging Face structure"""
|
| 9 |
+
|
| 10 |
+
# Source paths
|
| 11 |
+
source_dir = "../hospital_readmission_model_deployment_20250910_175014/models"
|
| 12 |
+
|
| 13 |
+
# Target paths
|
| 14 |
+
target_dir = "models"
|
| 15 |
+
|
| 16 |
+
# Ensure target directory exists
|
| 17 |
+
os.makedirs(target_dir, exist_ok=True)
|
| 18 |
+
|
| 19 |
+
files_to_copy = [
|
| 20 |
+
"production_model.pkl",
|
| 21 |
+
"smoteenn_preprocessor.pkl",
|
| 22 |
+
"model_info.json"
|
| 23 |
+
]
|
| 24 |
+
|
| 25 |
+
print("🚀 Copying model files for Hugging Face deployment...")
|
| 26 |
+
|
| 27 |
+
for file_name in files_to_copy:
|
| 28 |
+
source_path = os.path.join(source_dir, file_name)
|
| 29 |
+
target_path = os.path.join(target_dir, file_name)
|
| 30 |
+
|
| 31 |
+
if os.path.exists(source_path):
|
| 32 |
+
shutil.copy2(source_path, target_path)
|
| 33 |
+
print(f"✅ Copied {file_name}")
|
| 34 |
+
else:
|
| 35 |
+
print(f"❌ Source file not found: {source_path}")
|
| 36 |
+
|
| 37 |
+
print("🎯 Model files ready for Hugging Face Spaces deployment!")
|
| 38 |
+
|
| 39 |
+
# Verify files
|
| 40 |
+
print("\n📋 Verification:")
|
| 41 |
+
for file_name in files_to_copy:
|
| 42 |
+
target_path = os.path.join(target_dir, file_name)
|
| 43 |
+
if os.path.exists(target_path):
|
| 44 |
+
size = os.path.getsize(target_path)
|
| 45 |
+
print(f" ✅ {file_name}: {size:,} bytes")
|
| 46 |
+
else:
|
| 47 |
+
print(f" ❌ {file_name}: Not found")
|
| 48 |
+
|
| 49 |
+
if __name__ == "__main__":
|
| 50 |
+
copy_model_files()
|
fix_numpy.py
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Configuration for fixing numpy._core import issue
|
| 2 |
+
import os
|
| 3 |
+
import sys
|
| 4 |
+
|
| 5 |
+
def fix_numpy_import():
|
| 6 |
+
"""Fix numpy._core import issue for Hugging Face Spaces"""
|
| 7 |
+
try:
|
| 8 |
+
# Force reinstall numpy with compatible version
|
| 9 |
+
os.system("pip uninstall numpy -y")
|
| 10 |
+
os.system("pip install numpy==1.26.4")
|
| 11 |
+
|
| 12 |
+
# Force reload numpy
|
| 13 |
+
if 'numpy' in sys.modules:
|
| 14 |
+
del sys.modules['numpy']
|
| 15 |
+
|
| 16 |
+
import numpy as np
|
| 17 |
+
print(f"✅ Numpy fixed and loaded successfully: {np.__version__}")
|
| 18 |
+
return True
|
| 19 |
+
|
| 20 |
+
except Exception as e:
|
| 21 |
+
print(f"❌ Failed to fix numpy: {e}")
|
| 22 |
+
return False
|
| 23 |
+
|
| 24 |
+
if __name__ == "__main__":
|
| 25 |
+
fix_numpy_import()
|
models/model_info.json
ADDED
|
@@ -0,0 +1,15 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"model_type": "RandomForestClassifier",
|
| 3 |
+
"accuracy": 0.7470588235294118,
|
| 4 |
+
"precision": 0.75,
|
| 5 |
+
"recall": 0.75,
|
| 6 |
+
"f1_score": 0.75,
|
| 7 |
+
"auc": 0.8273442543938547,
|
| 8 |
+
"training_technique": "SMOTEENN + Advanced Feature Engineering",
|
| 9 |
+
"feature_count": 62,
|
| 10 |
+
"training_samples": 12236,
|
| 11 |
+
"test_samples": 3059,
|
| 12 |
+
"cv_mean_accuracy": 0.760264002701582,
|
| 13 |
+
"cv_std_accuracy": 0.01521358319534572,
|
| 14 |
+
"created_date": "2025-09-10T17:50:19.018434"
|
| 15 |
+
}
|
models/production_model.pkl
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6d9dea12fbc0e8147acb0c3fb87da397e4424353ac1d53bbd53b36278be4bd1b
|
| 3 |
+
size 153838713
|
models/smoteenn_preprocessor.pkl
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f4b3de16ade18a55419615d7996c5615c634d3bc7a2d7281cdcf9a7f2d0abbc4
|
| 3 |
+
size 6942
|
requirements.txt
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
numpy>=1.21.0,<2.0.0
|
| 2 |
+
scikit-learn>=1.3.0,<1.4.0
|
| 3 |
+
joblib>=1.3.0
|
| 4 |
+
pandas>=2.0.0
|
| 5 |
+
gradio>=4.0.0
|
verify_deployment.py
ADDED
|
@@ -0,0 +1,253 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Test and Verification Script for Hugging Face Deployment
|
| 2 |
+
|
| 3 |
+
import os
|
| 4 |
+
import sys
|
| 5 |
+
import json
|
| 6 |
+
|
| 7 |
+
def verify_deployment_structure():
|
| 8 |
+
"""Verify that all required files exist for deployment"""
|
| 9 |
+
|
| 10 |
+
print("🔍 Verifying Hugging Face Spaces deployment structure...")
|
| 11 |
+
|
| 12 |
+
required_files = [
|
| 13 |
+
"app.py",
|
| 14 |
+
"requirements.txt",
|
| 15 |
+
"README.md",
|
| 16 |
+
"DEPLOYMENT_GUIDE.md"
|
| 17 |
+
]
|
| 18 |
+
|
| 19 |
+
model_files = [
|
| 20 |
+
"models/production_model.pkl",
|
| 21 |
+
"models/smoteenn_preprocessor.pkl",
|
| 22 |
+
"models/model_info.json"
|
| 23 |
+
]
|
| 24 |
+
|
| 25 |
+
all_files = required_files + model_files
|
| 26 |
+
|
| 27 |
+
# Check main files
|
| 28 |
+
print("\n📋 Checking required files:")
|
| 29 |
+
missing_files = []
|
| 30 |
+
|
| 31 |
+
for file_path in all_files:
|
| 32 |
+
if os.path.exists(file_path):
|
| 33 |
+
size = os.path.getsize(file_path)
|
| 34 |
+
print(f" ✅ {file_path}: {size:,} bytes")
|
| 35 |
+
else:
|
| 36 |
+
print(f" ❌ {file_path}: Missing")
|
| 37 |
+
missing_files.append(file_path)
|
| 38 |
+
|
| 39 |
+
# Check directory structure
|
| 40 |
+
print("\n📁 Checking directory structure:")
|
| 41 |
+
if os.path.exists("models"):
|
| 42 |
+
print(" ✅ models/ directory exists")
|
| 43 |
+
else:
|
| 44 |
+
print(" ❌ models/ directory missing")
|
| 45 |
+
missing_files.append("models/")
|
| 46 |
+
|
| 47 |
+
# Validate content
|
| 48 |
+
print("\n🔍 Validating file content:")
|
| 49 |
+
|
| 50 |
+
# Check app.py
|
| 51 |
+
if os.path.exists("app.py"):
|
| 52 |
+
with open("app.py", "r") as f:
|
| 53 |
+
content = f.read()
|
| 54 |
+
if "HospitalReadmissionPredictor" in content:
|
| 55 |
+
print(" ✅ app.py contains main predictor class")
|
| 56 |
+
else:
|
| 57 |
+
print(" ❌ app.py missing predictor class")
|
| 58 |
+
|
| 59 |
+
if "gradio" in content:
|
| 60 |
+
print(" ✅ app.py imports Gradio")
|
| 61 |
+
else:
|
| 62 |
+
print(" ❌ app.py missing Gradio import")
|
| 63 |
+
|
| 64 |
+
# Check requirements.txt
|
| 65 |
+
if os.path.exists("requirements.txt"):
|
| 66 |
+
with open("requirements.txt", "r") as f:
|
| 67 |
+
content = f.read()
|
| 68 |
+
required_packages = ["scikit-learn", "joblib", "pandas", "numpy", "gradio"]
|
| 69 |
+
for package in required_packages:
|
| 70 |
+
if package in content:
|
| 71 |
+
print(f" ✅ requirements.txt includes {package}")
|
| 72 |
+
else:
|
| 73 |
+
print(f" ❌ requirements.txt missing {package}")
|
| 74 |
+
|
| 75 |
+
# Check model info
|
| 76 |
+
if os.path.exists("models/model_info.json"):
|
| 77 |
+
try:
|
| 78 |
+
with open("models/model_info.json", "r") as f:
|
| 79 |
+
model_info = json.load(f)
|
| 80 |
+
print(f" ✅ Model accuracy: {model_info.get('accuracy', 'N/A')}")
|
| 81 |
+
print(f" ✅ Model type: {model_info.get('model_type', 'N/A')}")
|
| 82 |
+
except Exception as e:
|
| 83 |
+
print(f" ❌ Error reading model_info.json: {e}")
|
| 84 |
+
|
| 85 |
+
# Final result
|
| 86 |
+
print(f"\n🎯 Deployment Status:")
|
| 87 |
+
if not missing_files:
|
| 88 |
+
print(" ✅ All files present - Ready for deployment!")
|
| 89 |
+
return True
|
| 90 |
+
else:
|
| 91 |
+
print(f" ❌ Missing {len(missing_files)} files:")
|
| 92 |
+
for file in missing_files:
|
| 93 |
+
print(f" - {file}")
|
| 94 |
+
return False
|
| 95 |
+
|
| 96 |
+
def test_local_import():
|
| 97 |
+
"""Test if the app can be imported locally"""
|
| 98 |
+
|
| 99 |
+
print("\n🧪 Testing local imports...")
|
| 100 |
+
|
| 101 |
+
try:
|
| 102 |
+
# Test basic imports
|
| 103 |
+
import pandas as pd
|
| 104 |
+
print(" ✅ pandas imported successfully")
|
| 105 |
+
except ImportError as e:
|
| 106 |
+
print(f" ❌ pandas import failed: {e}")
|
| 107 |
+
|
| 108 |
+
try:
|
| 109 |
+
import numpy as np
|
| 110 |
+
print(" ✅ numpy imported successfully")
|
| 111 |
+
except ImportError as e:
|
| 112 |
+
print(f" ❌ numpy import failed: {e}")
|
| 113 |
+
|
| 114 |
+
try:
|
| 115 |
+
import gradio as gr
|
| 116 |
+
print(" ✅ gradio imported successfully")
|
| 117 |
+
except ImportError as e:
|
| 118 |
+
print(f" ❌ gradio import failed: {e}")
|
| 119 |
+
|
| 120 |
+
try:
|
| 121 |
+
import joblib
|
| 122 |
+
print(" ✅ joblib imported successfully")
|
| 123 |
+
except ImportError as e:
|
| 124 |
+
print(f" ❌ joblib import failed: {e}")
|
| 125 |
+
|
| 126 |
+
try:
|
| 127 |
+
import sklearn
|
| 128 |
+
print(f" ✅ scikit-learn imported successfully (version: {sklearn.__version__})")
|
| 129 |
+
except ImportError as e:
|
| 130 |
+
print(f" ❌ scikit-learn import failed: {e}")
|
| 131 |
+
|
| 132 |
+
def generate_test_data():
|
| 133 |
+
"""Generate test data for validation"""
|
| 134 |
+
|
| 135 |
+
print("\n📊 Generating test data...")
|
| 136 |
+
|
| 137 |
+
test_cases = [
|
| 138 |
+
{
|
| 139 |
+
"name": "High Risk Patient",
|
| 140 |
+
"data": {
|
| 141 |
+
"age": 75,
|
| 142 |
+
"time_in_hospital": 8,
|
| 143 |
+
"n_lab_procedures": 55,
|
| 144 |
+
"n_procedures": 4,
|
| 145 |
+
"n_medications": 18,
|
| 146 |
+
"n_outpatient": 3,
|
| 147 |
+
"n_inpatient": 2,
|
| 148 |
+
"n_emergency": 2,
|
| 149 |
+
"medical_specialty": "Cardiology",
|
| 150 |
+
"primary_diagnosis": "Circulatory",
|
| 151 |
+
"admission_type": "Emergency",
|
| 152 |
+
"discharge_disposition": "Home Health Service",
|
| 153 |
+
"glucose_test": ">200",
|
| 154 |
+
"a1c_test": ">8",
|
| 155 |
+
"diabetes_med": "Yes",
|
| 156 |
+
"change_diabetes_med": "Up",
|
| 157 |
+
"insulin": "Steady",
|
| 158 |
+
"hemoglobin": 9.5,
|
| 159 |
+
"sodium": 130
|
| 160 |
+
},
|
| 161 |
+
"expected_risk": "High"
|
| 162 |
+
},
|
| 163 |
+
{
|
| 164 |
+
"name": "Low Risk Patient",
|
| 165 |
+
"data": {
|
| 166 |
+
"age": 45,
|
| 167 |
+
"time_in_hospital": 2,
|
| 168 |
+
"n_lab_procedures": 15,
|
| 169 |
+
"n_procedures": 1,
|
| 170 |
+
"n_medications": 5,
|
| 171 |
+
"n_outpatient": 1,
|
| 172 |
+
"n_inpatient": 0,
|
| 173 |
+
"n_emergency": 0,
|
| 174 |
+
"medical_specialty": "Family/GeneralPractice",
|
| 175 |
+
"primary_diagnosis": "Other",
|
| 176 |
+
"admission_type": "Elective",
|
| 177 |
+
"discharge_disposition": "Home",
|
| 178 |
+
"glucose_test": "Norm",
|
| 179 |
+
"a1c_test": "Norm",
|
| 180 |
+
"diabetes_med": "No",
|
| 181 |
+
"change_diabetes_med": "No",
|
| 182 |
+
"insulin": "No",
|
| 183 |
+
"hemoglobin": 13.5,
|
| 184 |
+
"sodium": 142
|
| 185 |
+
},
|
| 186 |
+
"expected_risk": "Low"
|
| 187 |
+
}
|
| 188 |
+
]
|
| 189 |
+
|
| 190 |
+
for i, case in enumerate(test_cases, 1):
|
| 191 |
+
print(f"\n Test Case {i}: {case['name']}")
|
| 192 |
+
print(f" Expected Risk: {case['expected_risk']}")
|
| 193 |
+
print(f" Key features:")
|
| 194 |
+
print(f" Age: {case['data']['age']} years")
|
| 195 |
+
print(f" Length of Stay: {case['data']['time_in_hospital']} days")
|
| 196 |
+
print(f" Medications: {case['data']['n_medications']}")
|
| 197 |
+
print(f" Emergency Visits: {case['data']['n_emergency']}")
|
| 198 |
+
print(f" Hemoglobin: {case['data']['hemoglobin']} g/dL")
|
| 199 |
+
|
| 200 |
+
return test_cases
|
| 201 |
+
|
| 202 |
+
def create_deployment_summary():
|
| 203 |
+
"""Create a deployment summary"""
|
| 204 |
+
|
| 205 |
+
print("\n📋 Creating deployment summary...")
|
| 206 |
+
|
| 207 |
+
summary = {
|
| 208 |
+
"deployment_type": "Hugging Face Spaces",
|
| 209 |
+
"model_type": "Hospital Readmission Risk Predictor",
|
| 210 |
+
"framework": "Gradio",
|
| 211 |
+
"files_checked": True,
|
| 212 |
+
"ready_for_deployment": verify_deployment_structure(),
|
| 213 |
+
"timestamp": "2025-09-10",
|
| 214 |
+
"instructions": "Follow DEPLOYMENT_GUIDE.md for step-by-step deployment"
|
| 215 |
+
}
|
| 216 |
+
|
| 217 |
+
with open("deployment_summary.json", "w") as f:
|
| 218 |
+
json.dump(summary, f, indent=2)
|
| 219 |
+
|
| 220 |
+
print(f" ✅ Deployment summary saved to deployment_summary.json")
|
| 221 |
+
|
| 222 |
+
return summary
|
| 223 |
+
|
| 224 |
+
if __name__ == "__main__":
|
| 225 |
+
print("🚀 Hospital Readmission Predictor - Deployment Verification")
|
| 226 |
+
print("=" * 60)
|
| 227 |
+
|
| 228 |
+
# Run verification
|
| 229 |
+
structure_ok = verify_deployment_structure()
|
| 230 |
+
test_local_import()
|
| 231 |
+
test_cases = generate_test_data()
|
| 232 |
+
summary = create_deployment_summary()
|
| 233 |
+
|
| 234 |
+
print("\n" + "=" * 60)
|
| 235 |
+
print("🎯 FINAL STATUS:")
|
| 236 |
+
|
| 237 |
+
if structure_ok:
|
| 238 |
+
print("✅ READY FOR HUGGING FACE SPACES DEPLOYMENT!")
|
| 239 |
+
print("\n📋 Next Steps:")
|
| 240 |
+
print("1. Follow DEPLOYMENT_GUIDE.md")
|
| 241 |
+
print("2. Create Hugging Face Space")
|
| 242 |
+
print("3. Upload files using Git or web interface")
|
| 243 |
+
print("4. Test deployment with provided test cases")
|
| 244 |
+
else:
|
| 245 |
+
print("❌ DEPLOYMENT NOT READY")
|
| 246 |
+
print("\n📋 Required Actions:")
|
| 247 |
+
print("1. Fix missing files listed above")
|
| 248 |
+
print("2. Run copy_models.py to copy model files")
|
| 249 |
+
print("3. Re-run this verification script")
|
| 250 |
+
|
| 251 |
+
print(f"\n📊 Test cases ready: {len(test_cases)}")
|
| 252 |
+
print("🔗 Deployment guide: DEPLOYMENT_GUIDE.md")
|
| 253 |
+
print("📋 Summary: deployment_summary.json")
|