Spaces:
Sleeping
Sleeping
Commit ·
1aa92a0
1
Parent(s): 1ea43e5
Update app.py
Browse files
app.py
CHANGED
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@@ -1,115 +1,1041 @@
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import gradio as gr
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import librosa
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import
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import analyze
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import config as cfg
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import segments
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import species
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import utils
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from train import trainModel
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if __name__ == "__main__":
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| 69 |
|
| 70 |
-
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|
| 71 |
|
| 72 |
-
|
| 73 |
-
|
| 74 |
-
|
| 75 |
-
|
| 76 |
-
|
| 77 |
-
overlap_slider = gr.Slider(0, 3, 0, step=0.01)
|
| 78 |
|
| 79 |
-
|
| 80 |
-
|
| 81 |
|
| 82 |
-
|
| 83 |
-
|
| 84 |
-
|
| 85 |
-
|
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|
| 86 |
|
| 87 |
-
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|
| 88 |
|
| 89 |
-
|
| 90 |
-
|
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|
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|
| 91 |
|
| 92 |
-
|
| 93 |
-
|
| 94 |
-
|
| 95 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 96 |
|
| 97 |
-
|
| 98 |
-
sensitivity_slider = gr.Slider(0.5, 1.5, 1, step=0.01)
|
| 99 |
-
overlap_slider = gr.Slider(0, 3, 0, step=0.01)
|
| 100 |
|
| 101 |
-
|
| 102 |
-
species_file_input = gr.File(label="Species list file")
|
| 103 |
|
| 104 |
-
|
| 105 |
-
|
| 106 |
-
|
| 107 |
-
|
|
|
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|
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|
| 108 |
|
| 109 |
-
|
| 110 |
-
|
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|
| 111 |
|
| 112 |
-
|
| 113 |
-
|
| 114 |
|
| 115 |
-
|
|
|
|
| 1 |
+
import concurrent.futures
|
| 2 |
+
import os
|
| 3 |
+
import sys
|
| 4 |
+
from multiprocessing import freeze_support
|
| 5 |
+
from pathlib import Path
|
| 6 |
+
|
| 7 |
import gradio as gr
|
| 8 |
import librosa
|
| 9 |
+
#import webview
|
| 10 |
|
| 11 |
+
import analyze
|
| 12 |
import config as cfg
|
| 13 |
import segments
|
| 14 |
import species
|
| 15 |
import utils
|
| 16 |
from train import trainModel
|
| 17 |
|
| 18 |
+
#_WINDOW: webview.Window
|
| 19 |
+
OUTPUT_TYPE_MAP = {"Raven selection table": "table", "Audacity": "audacity", "R": "r", "CSV": "csv"}
|
| 20 |
+
ORIGINAL_MODEL_PATH = cfg.MODEL_PATH
|
| 21 |
+
ORIGINAL_MDATA_MODEL_PATH = cfg.MDATA_MODEL_PATH
|
| 22 |
+
ORIGINAL_LABELS_FILE = cfg.LABELS_FILE
|
| 23 |
+
ORIGINAL_TRANSLATED_LABELS_PATH = cfg.TRANSLATED_LABELS_PATH
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
def analyzeFile_wrapper(entry):
|
| 27 |
+
return (entry[0], analyze.analyzeFile(entry))
|
| 28 |
+
|
| 29 |
+
|
| 30 |
+
def extractSegments_wrapper(entry):
|
| 31 |
+
return (entry[0][0], segments.extractSegments(entry))
|
| 32 |
+
|
| 33 |
+
|
| 34 |
+
def validate(value, msg):
|
| 35 |
+
"""Checks if the value ist not falsy.
|
| 36 |
+
|
| 37 |
+
If the value is falsy, an error will be raised.
|
| 38 |
+
|
| 39 |
+
Args:
|
| 40 |
+
value: Value to be tested.
|
| 41 |
+
msg: Message in case of an error.
|
| 42 |
+
"""
|
| 43 |
+
if not value:
|
| 44 |
+
raise gr.Error(msg)
|
| 45 |
+
|
| 46 |
+
|
| 47 |
+
def runSingleFileAnalysis(
|
| 48 |
+
input_path,
|
| 49 |
+
confidence,
|
| 50 |
+
sensitivity,
|
| 51 |
+
overlap,
|
| 52 |
+
species_list_choice,
|
| 53 |
+
species_list_file,
|
| 54 |
+
lat,
|
| 55 |
+
lon,
|
| 56 |
+
week,
|
| 57 |
+
use_yearlong,
|
| 58 |
+
sf_thresh,
|
| 59 |
+
custom_classifier_file,
|
| 60 |
+
locale,
|
| 61 |
+
):
|
| 62 |
+
validate(input_path, "Please select a file.")
|
| 63 |
+
|
| 64 |
+
return runAnalysis(
|
| 65 |
+
input_path,
|
| 66 |
+
None,
|
| 67 |
+
confidence,
|
| 68 |
+
sensitivity,
|
| 69 |
+
overlap,
|
| 70 |
+
species_list_choice,
|
| 71 |
+
species_list_file,
|
| 72 |
+
lat,
|
| 73 |
+
lon,
|
| 74 |
+
week,
|
| 75 |
+
use_yearlong,
|
| 76 |
+
sf_thresh,
|
| 77 |
+
custom_classifier_file,
|
| 78 |
+
"csv",
|
| 79 |
+
"en" if not locale else locale,
|
| 80 |
+
1,
|
| 81 |
+
4,
|
| 82 |
+
None,
|
| 83 |
+
progress=None,
|
| 84 |
+
)
|
| 85 |
+
|
| 86 |
+
|
| 87 |
+
def runBatchAnalysis(
|
| 88 |
+
output_path,
|
| 89 |
+
confidence,
|
| 90 |
+
sensitivity,
|
| 91 |
+
overlap,
|
| 92 |
+
species_list_choice,
|
| 93 |
+
species_list_file,
|
| 94 |
+
lat,
|
| 95 |
+
lon,
|
| 96 |
+
week,
|
| 97 |
+
use_yearlong,
|
| 98 |
+
sf_thresh,
|
| 99 |
+
custom_classifier_file,
|
| 100 |
+
output_type,
|
| 101 |
+
locale,
|
| 102 |
+
batch_size,
|
| 103 |
+
threads,
|
| 104 |
+
input_dir,
|
| 105 |
+
progress=gr.Progress(),
|
| 106 |
+
):
|
| 107 |
+
validate(input_dir, "Please select a directory.")
|
| 108 |
+
batch_size = int(batch_size)
|
| 109 |
+
threads = int(threads)
|
| 110 |
+
|
| 111 |
+
if species_list_choice == _CUSTOM_SPECIES:
|
| 112 |
+
validate(species_list_file, "Please select a species list.")
|
| 113 |
+
|
| 114 |
+
return runAnalysis(
|
| 115 |
+
None,
|
| 116 |
+
output_path,
|
| 117 |
+
confidence,
|
| 118 |
+
sensitivity,
|
| 119 |
+
overlap,
|
| 120 |
+
species_list_choice,
|
| 121 |
+
species_list_file,
|
| 122 |
+
lat,
|
| 123 |
+
lon,
|
| 124 |
+
week,
|
| 125 |
+
use_yearlong,
|
| 126 |
+
sf_thresh,
|
| 127 |
+
custom_classifier_file,
|
| 128 |
+
output_type,
|
| 129 |
+
"en" if not locale else locale,
|
| 130 |
+
batch_size if batch_size and batch_size > 0 else 1,
|
| 131 |
+
threads if threads and threads > 0 else 4,
|
| 132 |
+
input_dir,
|
| 133 |
+
progress,
|
| 134 |
+
)
|
| 135 |
+
|
| 136 |
+
|
| 137 |
+
def runAnalysis(
|
| 138 |
+
input_path: str,
|
| 139 |
+
output_path: str | None,
|
| 140 |
+
confidence: float,
|
| 141 |
+
sensitivity: float,
|
| 142 |
+
overlap: float,
|
| 143 |
+
species_list_choice: str,
|
| 144 |
+
species_list_file,
|
| 145 |
+
lat: float,
|
| 146 |
+
lon: float,
|
| 147 |
+
week: int,
|
| 148 |
+
use_yearlong: bool,
|
| 149 |
+
sf_thresh: float,
|
| 150 |
+
custom_classifier_file,
|
| 151 |
+
output_type: str,
|
| 152 |
+
locale: str,
|
| 153 |
+
batch_size: int,
|
| 154 |
+
threads: int,
|
| 155 |
+
input_dir: str,
|
| 156 |
+
progress: gr.Progress | None,
|
| 157 |
+
):
|
| 158 |
+
"""Starts the analysis.
|
| 159 |
+
|
| 160 |
+
Args:
|
| 161 |
+
input_path: Either a file or directory.
|
| 162 |
+
output_path: The output path for the result, if None the input_path is used
|
| 163 |
+
confidence: The selected minimum confidence.
|
| 164 |
+
sensitivity: The selected sensitivity.
|
| 165 |
+
overlap: The selected segment overlap.
|
| 166 |
+
species_list_choice: The choice for the species list.
|
| 167 |
+
species_list_file: The selected custom species list file.
|
| 168 |
+
lat: The selected latitude.
|
| 169 |
+
lon: The selected longitude.
|
| 170 |
+
week: The selected week of the year.
|
| 171 |
+
use_yearlong: Use yearlong instead of week.
|
| 172 |
+
sf_thresh: The threshold for the predicted species list.
|
| 173 |
+
custom_classifier_file: Custom classifier to be used.
|
| 174 |
+
output_type: The type of result to be generated.
|
| 175 |
+
locale: The translation to be used.
|
| 176 |
+
batch_size: The number of samples in a batch.
|
| 177 |
+
threads: The number of threads to be used.
|
| 178 |
+
input_dir: The input directory.
|
| 179 |
+
progress: The gradio progress bar.
|
| 180 |
+
"""
|
| 181 |
+
if progress is not None:
|
| 182 |
+
progress(0, desc="Preparing ...")
|
| 183 |
+
|
| 184 |
+
locale = locale.lower()
|
| 185 |
+
# Load eBird codes, labels
|
| 186 |
+
cfg.CODES = analyze.loadCodes()
|
| 187 |
+
cfg.LABELS = utils.readLines(ORIGINAL_LABELS_FILE)
|
| 188 |
+
cfg.LATITUDE, cfg.LONGITUDE, cfg.WEEK = lat, lon, -1 if use_yearlong else week
|
| 189 |
+
cfg.LOCATION_FILTER_THRESHOLD = sf_thresh
|
| 190 |
+
|
| 191 |
+
if species_list_choice == _CUSTOM_SPECIES:
|
| 192 |
+
if not species_list_file or not species_list_file.name:
|
| 193 |
+
cfg.SPECIES_LIST_FILE = None
|
| 194 |
+
else:
|
| 195 |
+
cfg.SPECIES_LIST_FILE = os.path.join(os.path.dirname(os.path.abspath(sys.argv[0])), species_list_file.name)
|
| 196 |
+
|
| 197 |
+
if os.path.isdir(cfg.SPECIES_LIST_FILE):
|
| 198 |
+
cfg.SPECIES_LIST_FILE = os.path.join(cfg.SPECIES_LIST_FILE, "species_list.txt")
|
| 199 |
+
|
| 200 |
+
cfg.SPECIES_LIST = utils.readLines(cfg.SPECIES_LIST_FILE)
|
| 201 |
+
cfg.CUSTOM_CLASSIFIER = None
|
| 202 |
+
elif species_list_choice == _PREDICT_SPECIES:
|
| 203 |
+
cfg.SPECIES_LIST_FILE = None
|
| 204 |
+
cfg.CUSTOM_CLASSIFIER = None
|
| 205 |
+
cfg.SPECIES_LIST = species.getSpeciesList(cfg.LATITUDE, cfg.LONGITUDE, cfg.WEEK, cfg.LOCATION_FILTER_THRESHOLD)
|
| 206 |
+
elif species_list_choice == _CUSTOM_CLASSIFIER:
|
| 207 |
+
if custom_classifier_file is None:
|
| 208 |
+
raise gr.Error("No custom classifier selected.")
|
| 209 |
+
|
| 210 |
+
# Set custom classifier?
|
| 211 |
+
cfg.CUSTOM_CLASSIFIER = custom_classifier_file # we treat this as absolute path, so no need to join with dirname
|
| 212 |
+
cfg.LABELS_FILE = custom_classifier_file.replace(".tflite", "_Labels.txt") # same for labels file
|
| 213 |
+
cfg.LABELS = utils.readLines(cfg.LABELS_FILE)
|
| 214 |
+
cfg.LATITUDE = -1
|
| 215 |
+
cfg.LONGITUDE = -1
|
| 216 |
+
cfg.SPECIES_LIST_FILE = None
|
| 217 |
+
cfg.SPECIES_LIST = []
|
| 218 |
+
locale = "en"
|
| 219 |
+
else:
|
| 220 |
+
cfg.SPECIES_LIST_FILE = None
|
| 221 |
+
cfg.SPECIES_LIST = []
|
| 222 |
+
cfg.CUSTOM_CLASSIFIER = None
|
| 223 |
+
|
| 224 |
+
# Load translated labels
|
| 225 |
+
lfile = os.path.join(cfg.TRANSLATED_LABELS_PATH, os.path.basename(cfg.LABELS_FILE).replace(".txt", f"_{locale}.txt"))
|
| 226 |
+
if not locale in ["en"] and os.path.isfile(lfile):
|
| 227 |
+
cfg.TRANSLATED_LABELS = utils.readLines(lfile)
|
| 228 |
+
else:
|
| 229 |
+
cfg.TRANSLATED_LABELS = cfg.LABELS
|
| 230 |
+
|
| 231 |
+
if len(cfg.SPECIES_LIST) == 0:
|
| 232 |
+
print(f"Species list contains {len(cfg.LABELS)} species")
|
| 233 |
+
else:
|
| 234 |
+
print(f"Species list contains {len(cfg.SPECIES_LIST)} species")
|
| 235 |
+
|
| 236 |
+
# Set input and output path
|
| 237 |
+
cfg.INPUT_PATH = input_path
|
| 238 |
+
|
| 239 |
+
if input_dir:
|
| 240 |
+
cfg.OUTPUT_PATH = output_path if output_path else input_dir
|
| 241 |
+
else:
|
| 242 |
+
cfg.OUTPUT_PATH = output_path if output_path else input_path.split(".", 1)[0] + ".csv"
|
| 243 |
+
|
| 244 |
+
# Parse input files
|
| 245 |
+
if input_dir:
|
| 246 |
+
cfg.FILE_LIST = utils.collect_audio_files(input_dir)
|
| 247 |
+
cfg.INPUT_PATH = input_dir
|
| 248 |
+
elif os.path.isdir(cfg.INPUT_PATH):
|
| 249 |
+
cfg.FILE_LIST = utils.collect_audio_files(cfg.INPUT_PATH)
|
| 250 |
+
else:
|
| 251 |
+
cfg.FILE_LIST = [cfg.INPUT_PATH]
|
| 252 |
+
|
| 253 |
+
validate(cfg.FILE_LIST, "No audio files found.")
|
| 254 |
+
|
| 255 |
+
# Set confidence threshold
|
| 256 |
+
cfg.MIN_CONFIDENCE = confidence
|
| 257 |
+
|
| 258 |
+
# Set sensitivity
|
| 259 |
+
cfg.SIGMOID_SENSITIVITY = sensitivity
|
| 260 |
+
|
| 261 |
+
# Set overlap
|
| 262 |
+
cfg.SIG_OVERLAP = overlap
|
| 263 |
+
|
| 264 |
+
# Set result type
|
| 265 |
+
cfg.RESULT_TYPE = OUTPUT_TYPE_MAP[output_type] if output_type in OUTPUT_TYPE_MAP else output_type.lower()
|
| 266 |
+
|
| 267 |
+
if not cfg.RESULT_TYPE in ["table", "audacity", "r", "csv"]:
|
| 268 |
+
cfg.RESULT_TYPE = "table"
|
| 269 |
+
|
| 270 |
+
# Set number of threads
|
| 271 |
+
if input_dir:
|
| 272 |
+
cfg.CPU_THREADS = max(1, int(threads))
|
| 273 |
+
cfg.TFLITE_THREADS = 1
|
| 274 |
+
else:
|
| 275 |
+
cfg.CPU_THREADS = 1
|
| 276 |
+
cfg.TFLITE_THREADS = max(1, int(threads))
|
| 277 |
+
|
| 278 |
+
# Set batch size
|
| 279 |
+
cfg.BATCH_SIZE = max(1, int(batch_size))
|
| 280 |
+
|
| 281 |
+
flist = []
|
| 282 |
+
|
| 283 |
+
for f in cfg.FILE_LIST:
|
| 284 |
+
flist.append((f, cfg.getConfig()))
|
| 285 |
+
|
| 286 |
+
result_list = []
|
| 287 |
+
|
| 288 |
+
if progress is not None:
|
| 289 |
+
progress(0, desc="Starting ...")
|
| 290 |
+
|
| 291 |
+
# Analyze files
|
| 292 |
+
if cfg.CPU_THREADS < 2:
|
| 293 |
+
for entry in flist:
|
| 294 |
+
result = analyzeFile_wrapper(entry)
|
| 295 |
+
|
| 296 |
+
result_list.append(result)
|
| 297 |
+
else:
|
| 298 |
+
with concurrent.futures.ProcessPoolExecutor(max_workers=cfg.CPU_THREADS) as executor:
|
| 299 |
+
futures = (executor.submit(analyzeFile_wrapper, arg) for arg in flist)
|
| 300 |
+
for i, f in enumerate(concurrent.futures.as_completed(futures), start=1):
|
| 301 |
+
if progress is not None:
|
| 302 |
+
progress((i, len(flist)), total=len(flist), unit="files")
|
| 303 |
+
result = f.result()
|
| 304 |
+
|
| 305 |
+
result_list.append(result)
|
| 306 |
+
|
| 307 |
+
return [[os.path.relpath(r[0], input_dir), r[1]] for r in result_list] if input_dir else cfg.OUTPUT_PATH
|
| 308 |
+
|
| 309 |
+
|
| 310 |
+
_CUSTOM_SPECIES = "Custom species list"
|
| 311 |
+
_PREDICT_SPECIES = "Species by location"
|
| 312 |
+
_CUSTOM_CLASSIFIER = "Custom classifier"
|
| 313 |
+
_ALL_SPECIES = "all species"
|
| 314 |
+
|
| 315 |
+
|
| 316 |
+
def show_species_choice(choice: str):
|
| 317 |
+
"""Sets the visibility of the species list choices.
|
| 318 |
+
|
| 319 |
+
Args:
|
| 320 |
+
choice: The label of the currently active choice.
|
| 321 |
+
|
| 322 |
+
Returns:
|
| 323 |
+
A list of [
|
| 324 |
+
Row update,
|
| 325 |
+
File update,
|
| 326 |
+
Column update,
|
| 327 |
+
Column update,
|
| 328 |
+
]
|
| 329 |
+
"""
|
| 330 |
+
if choice == _CUSTOM_SPECIES:
|
| 331 |
+
return [
|
| 332 |
+
gr.Row.update(visible=False),
|
| 333 |
+
gr.File.update(visible=True),
|
| 334 |
+
gr.Column.update(visible=False),
|
| 335 |
+
gr.Column.update(visible=False),
|
| 336 |
+
]
|
| 337 |
+
elif choice == _PREDICT_SPECIES:
|
| 338 |
+
return [
|
| 339 |
+
gr.Row.update(visible=True),
|
| 340 |
+
gr.File.update(visible=False),
|
| 341 |
+
gr.Column.update(visible=False),
|
| 342 |
+
gr.Column.update(visible=False),
|
| 343 |
+
]
|
| 344 |
+
elif choice == _CUSTOM_CLASSIFIER:
|
| 345 |
+
return [
|
| 346 |
+
gr.Row.update(visible=False),
|
| 347 |
+
gr.File.update(visible=False),
|
| 348 |
+
gr.Column.update(visible=True),
|
| 349 |
+
gr.Column.update(visible=False),
|
| 350 |
+
]
|
| 351 |
+
|
| 352 |
+
return [
|
| 353 |
+
gr.Row.update(visible=False),
|
| 354 |
+
gr.File.update(visible=False),
|
| 355 |
+
gr.Column.update(visible=False),
|
| 356 |
+
gr.Column.update(visible=True),
|
| 357 |
+
]
|
| 358 |
+
|
| 359 |
+
|
| 360 |
+
def select_subdirectories():
|
| 361 |
+
"""Creates a directory selection dialog.
|
| 362 |
+
|
| 363 |
+
Returns:
|
| 364 |
+
A tuples of (directory, list of subdirectories) or (None, None) if the dialog was canceled.
|
| 365 |
+
"""
|
| 366 |
+
dir_name = _WINDOW.create_file_dialog(webview.FOLDER_DIALOG)
|
| 367 |
+
|
| 368 |
+
if dir_name:
|
| 369 |
+
subdirs = utils.list_subdirectories(dir_name[0])
|
| 370 |
+
|
| 371 |
+
return dir_name[0], [[d] for d in subdirs]
|
| 372 |
+
|
| 373 |
+
return None, None
|
| 374 |
+
|
| 375 |
+
|
| 376 |
+
def select_file(filetypes=()):
|
| 377 |
+
"""Creates a file selection dialog.
|
| 378 |
+
|
| 379 |
+
Args:
|
| 380 |
+
filetypes: List of filetypes to be filtered in the dialog.
|
| 381 |
+
|
| 382 |
+
Returns:
|
| 383 |
+
The selected file or None of the dialog was canceled.
|
| 384 |
+
"""
|
| 385 |
+
files = _WINDOW.create_file_dialog(webview.OPEN_DIALOG, file_types=filetypes)
|
| 386 |
+
return files[0] if files else None
|
| 387 |
+
|
| 388 |
+
|
| 389 |
+
def format_seconds(secs: float):
|
| 390 |
+
"""Formats a number of seconds into a string.
|
| 391 |
+
|
| 392 |
+
Formats the seconds into the format "h:mm:ss.ms"
|
| 393 |
+
|
| 394 |
+
Args:
|
| 395 |
+
secs: Number of seconds.
|
| 396 |
+
|
| 397 |
+
Returns:
|
| 398 |
+
A string with the formatted seconds.
|
| 399 |
+
"""
|
| 400 |
+
hours, secs = divmod(secs, 3600)
|
| 401 |
+
minutes, secs = divmod(secs, 60)
|
| 402 |
+
|
| 403 |
+
return "{:2.0f}:{:02.0f}:{:06.3f}".format(hours, minutes, secs)
|
| 404 |
+
|
| 405 |
+
|
| 406 |
+
def select_directory(collect_files=True):
|
| 407 |
+
"""Shows a directory selection system dialog.
|
| 408 |
+
|
| 409 |
+
Uses the pywebview to create a system dialog.
|
| 410 |
+
|
| 411 |
+
Args:
|
| 412 |
+
collect_files: If True, also lists a files inside the directory.
|
| 413 |
+
|
| 414 |
+
Returns:
|
| 415 |
+
If collect_files==True, returns (directory path, list of (relative file path, audio length))
|
| 416 |
+
else just the directory path.
|
| 417 |
+
All values will be None of the dialog is cancelled.
|
| 418 |
+
"""
|
| 419 |
+
dir_name = _WINDOW.create_file_dialog(webview.FOLDER_DIALOG)
|
| 420 |
+
|
| 421 |
+
if collect_files:
|
| 422 |
+
if not dir_name:
|
| 423 |
+
return None, None
|
| 424 |
+
|
| 425 |
+
files = utils.collect_audio_files(dir_name[0])
|
| 426 |
+
|
| 427 |
+
return dir_name[0], [
|
| 428 |
+
[os.path.relpath(file, dir_name[0]), format_seconds(librosa.get_duration(filename=file))] for file in files
|
| 429 |
+
]
|
| 430 |
+
|
| 431 |
+
return dir_name[0] if dir_name else None
|
| 432 |
+
|
| 433 |
+
|
| 434 |
+
def start_training(
|
| 435 |
+
data_dir,
|
| 436 |
+
crop_mode,
|
| 437 |
+
crop_overlap,
|
| 438 |
+
output_dir,
|
| 439 |
+
classifier_name,
|
| 440 |
+
epochs,
|
| 441 |
+
batch_size,
|
| 442 |
+
learning_rate,
|
| 443 |
+
hidden_units,
|
| 444 |
+
use_mixup,
|
| 445 |
+
upsampling_ratio,
|
| 446 |
+
upsampling_mode,
|
| 447 |
+
model_format,
|
| 448 |
+
progress=gr.Progress(),
|
| 449 |
+
):
|
| 450 |
+
"""Starts the training of a custom classifier.
|
| 451 |
+
|
| 452 |
+
Args:
|
| 453 |
+
data_dir: Directory containing the training data.
|
| 454 |
+
output_dir: Directory for the new classifier.
|
| 455 |
+
classifier_name: File name of the classifier.
|
| 456 |
+
epochs: Number of epochs to train for.
|
| 457 |
+
batch_size: Number of samples in one batch.
|
| 458 |
+
learning_rate: Learning rate for training.
|
| 459 |
+
hidden_units: If > 0 the classifier contains a further hidden layer.
|
| 460 |
+
progress: The gradio progress bar.
|
| 461 |
+
|
| 462 |
+
Returns:
|
| 463 |
+
Returns a matplotlib.pyplot figure.
|
| 464 |
+
"""
|
| 465 |
+
validate(data_dir, "Please select your Training data.")
|
| 466 |
+
validate(output_dir, "Please select a directory for the classifier.")
|
| 467 |
+
validate(classifier_name, "Please enter a valid name for the classifier.")
|
| 468 |
+
|
| 469 |
+
if not epochs or epochs < 0:
|
| 470 |
+
raise gr.Error("Please enter a valid number of epochs.")
|
| 471 |
+
|
| 472 |
+
if not batch_size or batch_size < 0:
|
| 473 |
+
raise gr.Error("Please enter a valid batch size.")
|
| 474 |
+
|
| 475 |
+
if not learning_rate or learning_rate < 0:
|
| 476 |
+
raise gr.Error("Please enter a valid learning rate.")
|
| 477 |
+
|
| 478 |
+
if not hidden_units or hidden_units < 0:
|
| 479 |
+
hidden_units = 0
|
| 480 |
+
|
| 481 |
+
if progress is not None:
|
| 482 |
+
progress((0, epochs), desc="Loading data & building classifier", unit="epoch")
|
| 483 |
+
|
| 484 |
+
cfg.TRAIN_DATA_PATH = data_dir
|
| 485 |
+
cfg.SAMPLE_CROP_MODE = crop_mode
|
| 486 |
+
cfg.SIG_OVERLAP = crop_overlap
|
| 487 |
+
cfg.CUSTOM_CLASSIFIER = str(Path(output_dir) / classifier_name)
|
| 488 |
+
cfg.TRAIN_EPOCHS = int(epochs)
|
| 489 |
+
cfg.TRAIN_BATCH_SIZE = int(batch_size)
|
| 490 |
+
cfg.TRAIN_LEARNING_RATE = learning_rate
|
| 491 |
+
cfg.TRAIN_HIDDEN_UNITS = int(hidden_units)
|
| 492 |
+
cfg.TRAIN_WITH_MIXUP = use_mixup
|
| 493 |
+
cfg.UPSAMPLING_RATIO = min(max(0, upsampling_ratio), 1)
|
| 494 |
+
cfg.UPSAMPLING_MODE = upsampling_mode
|
| 495 |
+
cfg.TRAINED_MODEL_OUTPUT_FORMAT = model_format
|
| 496 |
+
|
| 497 |
+
def progression(epoch, logs=None):
|
| 498 |
+
if progress is not None:
|
| 499 |
+
if epoch + 1 == epochs:
|
| 500 |
+
progress((epoch + 1, epochs), total=epochs, unit="epoch", desc=f"Saving at {cfg.CUSTOM_CLASSIFIER}")
|
| 501 |
+
else:
|
| 502 |
+
progress((epoch + 1, epochs), total=epochs, unit="epoch")
|
| 503 |
+
|
| 504 |
+
history = trainModel(on_epoch_end=progression)
|
| 505 |
+
|
| 506 |
+
if len(history.epoch) < epochs:
|
| 507 |
+
gr.Info("Stopped early - validation metric not improving.")
|
| 508 |
+
|
| 509 |
+
auprc = history.history["val_AUPRC"]
|
| 510 |
+
|
| 511 |
+
import matplotlib.pyplot as plt
|
| 512 |
+
|
| 513 |
+
fig = plt.figure()
|
| 514 |
+
plt.plot(auprc)
|
| 515 |
+
plt.ylabel("Area under precision-recall curve")
|
| 516 |
+
plt.xlabel("Epoch")
|
| 517 |
+
|
| 518 |
+
return fig
|
| 519 |
+
|
| 520 |
+
|
| 521 |
+
def extract_segments(audio_dir, result_dir, output_dir, min_conf, num_seq, seq_length, threads, progress=gr.Progress()):
|
| 522 |
+
validate(audio_dir, "No audio directory selected")
|
| 523 |
+
|
| 524 |
+
if not result_dir:
|
| 525 |
+
result_dir = audio_dir
|
| 526 |
+
|
| 527 |
+
if not output_dir:
|
| 528 |
+
output_dir = audio_dir
|
| 529 |
+
|
| 530 |
+
if progress is not None:
|
| 531 |
+
progress(0, desc="Searching files ...")
|
| 532 |
+
|
| 533 |
+
# Parse audio and result folders
|
| 534 |
+
cfg.FILE_LIST = segments.parseFolders(audio_dir, result_dir)
|
| 535 |
+
|
| 536 |
+
# Set output folder
|
| 537 |
+
cfg.OUTPUT_PATH = output_dir
|
| 538 |
+
|
| 539 |
+
# Set number of threads
|
| 540 |
+
cfg.CPU_THREADS = int(threads)
|
| 541 |
+
|
| 542 |
+
# Set confidence threshold
|
| 543 |
+
cfg.MIN_CONFIDENCE = max(0.01, min(0.99, min_conf))
|
| 544 |
+
|
| 545 |
+
# Parse file list and make list of segments
|
| 546 |
+
cfg.FILE_LIST = segments.parseFiles(cfg.FILE_LIST, max(1, int(num_seq)))
|
| 547 |
+
|
| 548 |
+
# Add config items to each file list entry.
|
| 549 |
+
# We have to do this for Windows which does not
|
| 550 |
+
# support fork() and thus each process has to
|
| 551 |
+
# have its own config. USE LINUX!
|
| 552 |
+
flist = [(entry, max(cfg.SIG_LENGTH, float(seq_length)), cfg.getConfig()) for entry in cfg.FILE_LIST]
|
| 553 |
+
|
| 554 |
+
result_list = []
|
| 555 |
+
|
| 556 |
+
# Extract segments
|
| 557 |
+
if cfg.CPU_THREADS < 2:
|
| 558 |
+
for i, entry in enumerate(flist):
|
| 559 |
+
result = extractSegments_wrapper(entry)
|
| 560 |
+
result_list.append(result)
|
| 561 |
+
|
| 562 |
+
if progress is not None:
|
| 563 |
+
progress((i, len(flist)), total=len(flist), unit="files")
|
| 564 |
+
else:
|
| 565 |
+
with concurrent.futures.ProcessPoolExecutor(max_workers=cfg.CPU_THREADS) as executor:
|
| 566 |
+
futures = (executor.submit(extractSegments_wrapper, arg) for arg in flist)
|
| 567 |
+
for i, f in enumerate(concurrent.futures.as_completed(futures), start=1):
|
| 568 |
+
if progress is not None:
|
| 569 |
+
progress((i, len(flist)), total=len(flist), unit="files")
|
| 570 |
+
result = f.result()
|
| 571 |
+
|
| 572 |
+
result_list.append(result)
|
| 573 |
+
|
| 574 |
+
return [[os.path.relpath(r[0], audio_dir), r[1]] for r in result_list]
|
| 575 |
+
|
| 576 |
+
|
| 577 |
+
def sample_sliders(opened=True):
|
| 578 |
+
"""Creates the gradio accordion for the inference settings.
|
| 579 |
+
|
| 580 |
+
Args:
|
| 581 |
+
opened: If True the accordion is open on init.
|
| 582 |
+
|
| 583 |
+
Returns:
|
| 584 |
+
A tuple with the created elements:
|
| 585 |
+
(Slider (min confidence), Slider (sensitivity), Slider (overlap))
|
| 586 |
+
"""
|
| 587 |
+
with gr.Accordion("Inference settings", open=opened):
|
| 588 |
+
with gr.Row():
|
| 589 |
+
confidence_slider = gr.Slider(
|
| 590 |
+
minimum=0, maximum=1, value=0.5, step=0.01, label="Minimum Confidence", info="Minimum confidence threshold."
|
| 591 |
+
)
|
| 592 |
+
sensitivity_slider = gr.Slider(
|
| 593 |
+
minimum=0.5,
|
| 594 |
+
maximum=1.5,
|
| 595 |
+
value=1,
|
| 596 |
+
step=0.01,
|
| 597 |
+
label="Sensitivity",
|
| 598 |
+
info="Detection sensitivity; Higher values result in higher sensitivity.",
|
| 599 |
+
)
|
| 600 |
+
overlap_slider = gr.Slider(
|
| 601 |
+
minimum=0, maximum=2.99, value=0, step=0.01, label="Overlap", info="Overlap of prediction segments."
|
| 602 |
+
)
|
| 603 |
+
|
| 604 |
+
return confidence_slider, sensitivity_slider, overlap_slider
|
| 605 |
+
|
| 606 |
+
|
| 607 |
+
def locale():
|
| 608 |
+
"""Creates the gradio elements for locale selection
|
| 609 |
+
|
| 610 |
+
Reads the translated labels inside the checkpoints directory.
|
| 611 |
+
|
| 612 |
+
Returns:
|
| 613 |
+
The dropdown element.
|
| 614 |
+
"""
|
| 615 |
+
label_files = os.listdir(os.path.join(os.path.dirname(sys.argv[0]), ORIGINAL_TRANSLATED_LABELS_PATH))
|
| 616 |
+
options = ["EN"] + [label_file.rsplit("_", 1)[-1].split(".")[0].upper() for label_file in label_files]
|
| 617 |
+
|
| 618 |
+
return gr.Dropdown(options, value="EN", label="Locale", info="Locale for the translated species common names.")
|
| 619 |
+
|
| 620 |
+
|
| 621 |
+
def species_lists(opened=True):
|
| 622 |
+
"""Creates the gradio accordion for species selection.
|
| 623 |
+
|
| 624 |
+
Args:
|
| 625 |
+
opened: If True the accordion is open on init.
|
| 626 |
+
|
| 627 |
+
Returns:
|
| 628 |
+
A tuple with the created elements:
|
| 629 |
+
(Radio (choice), File (custom species list), Slider (lat), Slider (lon), Slider (week), Slider (threshold), Checkbox (yearlong?), State (custom classifier))
|
| 630 |
+
"""
|
| 631 |
+
with gr.Accordion("Species selection", open=opened):
|
| 632 |
+
with gr.Row():
|
| 633 |
+
species_list_radio = gr.Radio(
|
| 634 |
+
[_CUSTOM_SPECIES, _PREDICT_SPECIES, _CUSTOM_CLASSIFIER, _ALL_SPECIES],
|
| 635 |
+
value=_ALL_SPECIES,
|
| 636 |
+
label="Species list",
|
| 637 |
+
info="List of all possible species",
|
| 638 |
+
elem_classes="d-block",
|
| 639 |
+
)
|
| 640 |
+
|
| 641 |
+
with gr.Column(visible=False) as position_row:
|
| 642 |
+
lat_number = gr.Slider(
|
| 643 |
+
minimum=-90, maximum=90, value=0, step=1, label="Latitude", info="Recording location latitude."
|
| 644 |
+
)
|
| 645 |
+
lon_number = gr.Slider(
|
| 646 |
+
minimum=-180, maximum=180, value=0, step=1, label="Longitude", info="Recording location longitude."
|
| 647 |
+
)
|
| 648 |
+
with gr.Row():
|
| 649 |
+
yearlong_checkbox = gr.Checkbox(True, label="Year-round")
|
| 650 |
+
week_number = gr.Slider(
|
| 651 |
+
minimum=1,
|
| 652 |
+
maximum=48,
|
| 653 |
+
value=1,
|
| 654 |
+
step=1,
|
| 655 |
+
interactive=False,
|
| 656 |
+
label="Week",
|
| 657 |
+
info="Week of the year when the recording was made. Values in [1, 48] (4 weeks per month).",
|
| 658 |
+
)
|
| 659 |
+
|
| 660 |
+
def onChange(use_yearlong):
|
| 661 |
+
return gr.Slider.update(interactive=(not use_yearlong))
|
| 662 |
+
|
| 663 |
+
yearlong_checkbox.change(onChange, inputs=yearlong_checkbox, outputs=week_number, show_progress=False)
|
| 664 |
+
sf_thresh_number = gr.Slider(
|
| 665 |
+
minimum=0.01,
|
| 666 |
+
maximum=0.99,
|
| 667 |
+
value=0.03,
|
| 668 |
+
step=0.01,
|
| 669 |
+
label="Location filter threshold",
|
| 670 |
+
info="Minimum species occurrence frequency threshold for location filter.",
|
| 671 |
+
)
|
| 672 |
+
|
| 673 |
+
species_file_input = gr.File(file_types=[".txt"], info="Path to species list file or folder.", visible=False)
|
| 674 |
+
empty_col = gr.Column()
|
| 675 |
+
|
| 676 |
+
with gr.Column(visible=False) as custom_classifier_selector:
|
| 677 |
+
classifier_selection_button = gr.Button("Select classifier")
|
| 678 |
+
classifier_file_input = gr.Files(
|
| 679 |
+
file_types=[".tflite"], info="Path to the custom classifier.", visible=False, interactive=False
|
| 680 |
+
)
|
| 681 |
+
selected_classifier_state = gr.State()
|
| 682 |
+
|
| 683 |
+
def on_custom_classifier_selection_click():
|
| 684 |
+
file = select_file(("TFLite classifier (*.tflite)",))
|
| 685 |
+
|
| 686 |
+
if file:
|
| 687 |
+
labels = os.path.splitext(file)[0] + "_Labels.txt"
|
| 688 |
+
|
| 689 |
+
return file, gr.File.update(value=[file, labels], visible=True)
|
| 690 |
+
|
| 691 |
+
return None
|
| 692 |
+
|
| 693 |
+
classifier_selection_button.click(
|
| 694 |
+
on_custom_classifier_selection_click,
|
| 695 |
+
outputs=[selected_classifier_state, classifier_file_input],
|
| 696 |
+
show_progress=False,
|
| 697 |
+
)
|
| 698 |
+
|
| 699 |
+
species_list_radio.change(
|
| 700 |
+
show_species_choice,
|
| 701 |
+
inputs=[species_list_radio],
|
| 702 |
+
outputs=[position_row, species_file_input, custom_classifier_selector, empty_col],
|
| 703 |
+
show_progress=False,
|
| 704 |
+
)
|
| 705 |
+
|
| 706 |
+
return (
|
| 707 |
+
species_list_radio,
|
| 708 |
+
species_file_input,
|
| 709 |
+
lat_number,
|
| 710 |
+
lon_number,
|
| 711 |
+
week_number,
|
| 712 |
+
sf_thresh_number,
|
| 713 |
+
yearlong_checkbox,
|
| 714 |
+
selected_classifier_state,
|
| 715 |
+
)
|
| 716 |
+
|
| 717 |
|
| 718 |
if __name__ == "__main__":
|
| 719 |
+
freeze_support()
|
| 720 |
+
|
| 721 |
+
def build_single_analysis_tab():
|
| 722 |
+
with gr.Tab("Single file"):
|
| 723 |
+
audio_input = gr.Audio(type="filepath", label="file", elem_id="single_file_audio")
|
| 724 |
+
|
| 725 |
+
confidence_slider, sensitivity_slider, overlap_slider = sample_sliders(False)
|
| 726 |
+
(
|
| 727 |
+
species_list_radio,
|
| 728 |
+
species_file_input,
|
| 729 |
+
lat_number,
|
| 730 |
+
lon_number,
|
| 731 |
+
week_number,
|
| 732 |
+
sf_thresh_number,
|
| 733 |
+
yearlong_checkbox,
|
| 734 |
+
selected_classifier_state,
|
| 735 |
+
) = species_lists(False)
|
| 736 |
+
locale_radio = locale()
|
| 737 |
+
|
| 738 |
+
inputs = [
|
| 739 |
+
audio_input,
|
| 740 |
+
confidence_slider,
|
| 741 |
+
sensitivity_slider,
|
| 742 |
+
overlap_slider,
|
| 743 |
+
species_list_radio,
|
| 744 |
+
species_file_input,
|
| 745 |
+
lat_number,
|
| 746 |
+
lon_number,
|
| 747 |
+
week_number,
|
| 748 |
+
yearlong_checkbox,
|
| 749 |
+
sf_thresh_number,
|
| 750 |
+
selected_classifier_state,
|
| 751 |
+
locale_radio,
|
| 752 |
+
]
|
| 753 |
+
|
| 754 |
+
output_dataframe = gr.Dataframe(
|
| 755 |
+
type="pandas",
|
| 756 |
+
headers=["Start (s)", "End (s)", "Scientific name", "Common name", "Confidence"],
|
| 757 |
+
elem_classes="mh-200",
|
| 758 |
+
)
|
| 759 |
+
|
| 760 |
+
single_file_analyze = gr.Button("Analyze")
|
| 761 |
+
|
| 762 |
+
single_file_analyze.click(runSingleFileAnalysis, inputs=inputs, outputs=output_dataframe)
|
| 763 |
+
|
| 764 |
+
def build_multi_analysis_tab():
|
| 765 |
+
with gr.Tab("Multiple files"):
|
| 766 |
+
input_directory_state = gr.State()
|
| 767 |
+
output_directory_predict_state = gr.State()
|
| 768 |
+
with gr.Row():
|
| 769 |
+
with gr.Column():
|
| 770 |
+
select_directory_btn = gr.Button("Select directory (recursive)")
|
| 771 |
+
directory_input = gr.Matrix(interactive=False, elem_classes="mh-200", headers=["Subpath", "Length"])
|
| 772 |
+
|
| 773 |
+
def select_directory_on_empty():
|
| 774 |
+
res = select_directory()
|
| 775 |
+
|
| 776 |
+
return res if res[1] else [res[0], [["No files found"]]]
|
| 777 |
+
|
| 778 |
+
select_directory_btn.click(
|
| 779 |
+
select_directory_on_empty, outputs=[input_directory_state, directory_input], show_progress=True
|
| 780 |
+
)
|
| 781 |
+
|
| 782 |
+
with gr.Column():
|
| 783 |
+
select_out_directory_btn = gr.Button("Select output directory.")
|
| 784 |
+
selected_out_textbox = gr.Textbox(
|
| 785 |
+
label="Output directory",
|
| 786 |
+
interactive=False,
|
| 787 |
+
placeholder="If not selected, the input directory will be used.",
|
| 788 |
+
)
|
| 789 |
+
|
| 790 |
+
def select_directory_wrapper():
|
| 791 |
+
return (select_directory(collect_files=False),) * 2
|
| 792 |
+
|
| 793 |
+
select_out_directory_btn.click(
|
| 794 |
+
select_directory_wrapper,
|
| 795 |
+
outputs=[output_directory_predict_state, selected_out_textbox],
|
| 796 |
+
show_progress=False,
|
| 797 |
+
)
|
| 798 |
+
|
| 799 |
+
confidence_slider, sensitivity_slider, overlap_slider = sample_sliders()
|
| 800 |
+
|
| 801 |
+
(
|
| 802 |
+
species_list_radio,
|
| 803 |
+
species_file_input,
|
| 804 |
+
lat_number,
|
| 805 |
+
lon_number,
|
| 806 |
+
week_number,
|
| 807 |
+
sf_thresh_number,
|
| 808 |
+
yearlong_checkbox,
|
| 809 |
+
selected_classifier_state,
|
| 810 |
+
) = species_lists()
|
| 811 |
+
|
| 812 |
+
output_type_radio = gr.Radio(
|
| 813 |
+
list(OUTPUT_TYPE_MAP.keys()),
|
| 814 |
+
value="Raven selection table",
|
| 815 |
+
label="Result type",
|
| 816 |
+
info="Specifies output format.",
|
| 817 |
+
)
|
| 818 |
+
|
| 819 |
+
with gr.Row():
|
| 820 |
+
batch_size_number = gr.Number(
|
| 821 |
+
precision=1, label="Batch size", value=1, info="Number of samples to process at the same time."
|
| 822 |
+
)
|
| 823 |
+
threads_number = gr.Number(precision=1, label="Threads", value=4, info="Number of CPU threads.")
|
| 824 |
+
|
| 825 |
+
locale_radio = locale()
|
| 826 |
+
|
| 827 |
+
start_batch_analysis_btn = gr.Button("Analyze")
|
| 828 |
+
|
| 829 |
+
result_grid = gr.Matrix(headers=["File", "Execution"], elem_classes="mh-200")
|
| 830 |
+
|
| 831 |
+
inputs = [
|
| 832 |
+
output_directory_predict_state,
|
| 833 |
+
confidence_slider,
|
| 834 |
+
sensitivity_slider,
|
| 835 |
+
overlap_slider,
|
| 836 |
+
species_list_radio,
|
| 837 |
+
species_file_input,
|
| 838 |
+
lat_number,
|
| 839 |
+
lon_number,
|
| 840 |
+
week_number,
|
| 841 |
+
yearlong_checkbox,
|
| 842 |
+
sf_thresh_number,
|
| 843 |
+
selected_classifier_state,
|
| 844 |
+
output_type_radio,
|
| 845 |
+
locale_radio,
|
| 846 |
+
batch_size_number,
|
| 847 |
+
threads_number,
|
| 848 |
+
input_directory_state,
|
| 849 |
+
]
|
| 850 |
+
|
| 851 |
+
start_batch_analysis_btn.click(runBatchAnalysis, inputs=inputs, outputs=result_grid)
|
| 852 |
+
|
| 853 |
+
def build_train_tab():
|
| 854 |
+
with gr.Tab("Train"):
|
| 855 |
+
input_directory_state = gr.State()
|
| 856 |
+
output_directory_state = gr.State()
|
| 857 |
+
|
| 858 |
+
with gr.Row():
|
| 859 |
+
with gr.Column():
|
| 860 |
+
select_directory_btn = gr.Button("Training data")
|
| 861 |
+
directory_input = gr.List(headers=["Classes"], interactive=False, elem_classes="mh-200")
|
| 862 |
+
select_directory_btn.click(
|
| 863 |
+
select_subdirectories, outputs=[input_directory_state, directory_input], show_progress=False
|
| 864 |
+
)
|
| 865 |
+
|
| 866 |
+
with gr.Column():
|
| 867 |
+
select_directory_btn = gr.Button("Classifier output")
|
| 868 |
+
|
| 869 |
+
with gr.Column():
|
| 870 |
+
classifier_name = gr.Textbox(
|
| 871 |
+
"CustomClassifier",
|
| 872 |
+
visible=False,
|
| 873 |
+
info="The name of the new classifier.",
|
| 874 |
+
)
|
| 875 |
+
output_format = gr.Radio(
|
| 876 |
+
["tflite", "raven", "both"],
|
| 877 |
+
value="tflite",
|
| 878 |
+
label="Model output format",
|
| 879 |
+
info="Format for the trained classifier.",
|
| 880 |
+
visible=False,
|
| 881 |
+
)
|
| 882 |
+
|
| 883 |
+
def select_directory_and_update_tb():
|
| 884 |
+
dir_name = _WINDOW.create_file_dialog(webview.FOLDER_DIALOG)
|
| 885 |
+
|
| 886 |
+
if dir_name:
|
| 887 |
+
return (
|
| 888 |
+
dir_name[0],
|
| 889 |
+
gr.Textbox.update(label=dir_name[0] + "\\", visible=True),
|
| 890 |
+
gr.Radio.update(visible=True, interactive=True),
|
| 891 |
+
)
|
| 892 |
+
|
| 893 |
+
return None, None
|
| 894 |
+
|
| 895 |
+
select_directory_btn.click(
|
| 896 |
+
select_directory_and_update_tb,
|
| 897 |
+
outputs=[output_directory_state, classifier_name, output_format],
|
| 898 |
+
show_progress=False,
|
| 899 |
+
)
|
| 900 |
+
|
| 901 |
+
with gr.Row():
|
| 902 |
+
epoch_number = gr.Number(100, label="Epochs", info="Number of training epochs.")
|
| 903 |
+
batch_size_number = gr.Number(32, label="Batch size", info="Batch size.")
|
| 904 |
+
learning_rate_number = gr.Number(0.01, label="Learning rate", info="Learning rate.")
|
| 905 |
+
|
| 906 |
+
with gr.Row():
|
| 907 |
+
crop_mode = gr.Radio(
|
| 908 |
+
["center", "first", "segments"],
|
| 909 |
+
value="center",
|
| 910 |
+
label="Crop mode",
|
| 911 |
+
info="Crop mode for training data.",
|
| 912 |
+
)
|
| 913 |
+
crop_overlap = gr.Number(0.0, label="Crop overlap", info="Overlap of training data segments", visible=False)
|
| 914 |
+
|
| 915 |
+
def on_crop_select(new_crop_mode):
|
| 916 |
+
return gr.Number.update(visible=new_crop_mode == "segments", interactive=new_crop_mode == "segments")
|
| 917 |
+
|
| 918 |
+
crop_mode.change(on_crop_select, inputs=crop_mode, outputs=crop_overlap)
|
| 919 |
+
|
| 920 |
+
with gr.Row():
|
| 921 |
+
upsampling_mode = gr.Radio(
|
| 922 |
+
["repeat", "mean", "smote"],
|
| 923 |
+
value="repeat",
|
| 924 |
+
label="Upsampling mode",
|
| 925 |
+
info="Balance data through upsampling.",
|
| 926 |
+
)
|
| 927 |
+
upsampling_ratio = gr.Slider(
|
| 928 |
+
0.0, 1.0, 0.0, step=0.01, label="Upsampling ratio", info="Balance train data and upsample minority classes."
|
| 929 |
+
)
|
| 930 |
+
|
| 931 |
+
with gr.Row():
|
| 932 |
+
hidden_units_number = gr.Number(
|
| 933 |
+
0, label="Hidden units", info="Number of hidden units. If set to >0, a two-layer classifier is used."
|
| 934 |
+
)
|
| 935 |
+
use_mixup = gr.Checkbox(False, label="Use mixup", info="Whether to use mixup for training.", show_label=True)
|
| 936 |
+
|
| 937 |
+
train_history_plot = gr.Plot()
|
| 938 |
+
|
| 939 |
+
start_training_button = gr.Button("Start training")
|
| 940 |
|
| 941 |
+
start_training_button.click(
|
| 942 |
+
start_training,
|
| 943 |
+
inputs=[
|
| 944 |
+
input_directory_state,
|
| 945 |
+
crop_mode,
|
| 946 |
+
crop_overlap,
|
| 947 |
+
output_directory_state,
|
| 948 |
+
classifier_name,
|
| 949 |
+
epoch_number,
|
| 950 |
+
batch_size_number,
|
| 951 |
+
learning_rate_number,
|
| 952 |
+
hidden_units_number,
|
| 953 |
+
use_mixup,
|
| 954 |
+
upsampling_ratio,
|
| 955 |
+
upsampling_mode,
|
| 956 |
+
output_format,
|
| 957 |
+
],
|
| 958 |
+
outputs=[train_history_plot],
|
| 959 |
+
)
|
| 960 |
|
| 961 |
+
def build_segments_tab():
|
| 962 |
+
with gr.Tab("Segments"):
|
| 963 |
+
audio_directory_state = gr.State()
|
| 964 |
+
result_directory_state = gr.State()
|
| 965 |
+
output_directory_state = gr.State()
|
|
|
|
| 966 |
|
| 967 |
+
def select_directory_to_state_and_tb():
|
| 968 |
+
return (select_directory(collect_files=False),) * 2
|
| 969 |
|
| 970 |
+
with gr.Row():
|
| 971 |
+
select_audio_directory_btn = gr.Button("Select audio directory (recursive)")
|
| 972 |
+
selected_audio_directory_tb = gr.Textbox(show_label=False, interactive=False)
|
| 973 |
+
select_audio_directory_btn.click(
|
| 974 |
+
select_directory_to_state_and_tb,
|
| 975 |
+
outputs=[selected_audio_directory_tb, audio_directory_state],
|
| 976 |
+
show_progress=False,
|
| 977 |
+
)
|
| 978 |
|
| 979 |
+
with gr.Row():
|
| 980 |
+
select_result_directory_btn = gr.Button("Select result directory")
|
| 981 |
+
selected_result_directory_tb = gr.Textbox(
|
| 982 |
+
show_label=False, interactive=False, placeholder="Same as audio directory if not selected"
|
| 983 |
+
)
|
| 984 |
+
select_result_directory_btn.click(
|
| 985 |
+
select_directory_to_state_and_tb,
|
| 986 |
+
outputs=[result_directory_state, selected_result_directory_tb],
|
| 987 |
+
show_progress=False,
|
| 988 |
+
)
|
| 989 |
|
| 990 |
+
with gr.Row():
|
| 991 |
+
select_output_directory_btn = gr.Button("Select output directory")
|
| 992 |
+
selected_output_directory_tb = gr.Textbox(
|
| 993 |
+
show_label=False, interactive=False, placeholder="Same as audio directory if not selected"
|
| 994 |
+
)
|
| 995 |
+
select_output_directory_btn.click(
|
| 996 |
+
select_directory_to_state_and_tb,
|
| 997 |
+
outputs=[selected_output_directory_tb, output_directory_state],
|
| 998 |
+
show_progress=False,
|
| 999 |
+
)
|
| 1000 |
|
| 1001 |
+
min_conf_slider = gr.Slider(
|
| 1002 |
+
minimum=0.1, maximum=0.99, step=0.01, label="Minimum confidence", info="Minimum confidence threshold."
|
| 1003 |
+
)
|
| 1004 |
+
num_seq_number = gr.Number(
|
| 1005 |
+
100, label="Max number of segments", info="Maximum number of randomly extracted segments per species."
|
| 1006 |
+
)
|
| 1007 |
+
seq_length_number = gr.Number(3.0, label="Sequence length", info="Length of extracted segments in seconds.")
|
| 1008 |
+
threads_number = gr.Number(4, label="Threads", info="Number of CPU threads.")
|
| 1009 |
|
| 1010 |
+
extract_segments_btn = gr.Button("Extract segments")
|
|
|
|
|
|
|
| 1011 |
|
| 1012 |
+
result_grid = gr.Matrix(headers=["File", "Execution"], elem_classes="mh-200")
|
|
|
|
| 1013 |
|
| 1014 |
+
extract_segments_btn.click(
|
| 1015 |
+
extract_segments,
|
| 1016 |
+
inputs=[
|
| 1017 |
+
audio_directory_state,
|
| 1018 |
+
result_directory_state,
|
| 1019 |
+
output_directory_state,
|
| 1020 |
+
min_conf_slider,
|
| 1021 |
+
num_seq_number,
|
| 1022 |
+
seq_length_number,
|
| 1023 |
+
threads_number,
|
| 1024 |
+
],
|
| 1025 |
+
outputs=result_grid,
|
| 1026 |
+
)
|
| 1027 |
|
| 1028 |
+
with gr.Blocks(
|
| 1029 |
+
css=r".d-block .wrap {display: block !important;} .mh-200 {max-height: 300px; overflow-y: auto !important;} footer {display: none !important;} #single_file_audio, #single_file_audio * {max-height: 81.6px; min-height: 0;}",
|
| 1030 |
+
theme=gr.themes.Default(),
|
| 1031 |
+
analytics_enabled=False,
|
| 1032 |
+
) as demo:
|
| 1033 |
+
build_single_analysis_tab()
|
| 1034 |
+
#build_multi_analysis_tab()
|
| 1035 |
+
#build_train_tab()
|
| 1036 |
+
# build_segments_tab()
|
| 1037 |
|
| 1038 |
+
url = demo.queue(api_open=False).launch(prevent_thread_lock=True, quiet=True)[1]
|
| 1039 |
+
#_WINDOW = webview.create_window("BirdNET-Analyzer", url.rstrip("/") + "?__theme=light", min_size=(1024, 768))
|
| 1040 |
|
| 1041 |
+
#webview.start(private_mode=False)
|