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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>NemaQuant - Nematode Egg Detection</title>
<link rel="stylesheet" href="{{ url_for('static', filename='style.css') }}">
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/remixicon@3.5.0/fonts/remixicon.css">
<script src="https://cdn.plot.ly/plotly-2.26.0.min.js"></script>
</head>
<body>
<h1>
<i class="ri-microscope-line"></i>
NemaQuant
<small style="display: block; font-size: 1rem; font-weight: normal; color: var(--text-muted);">
Automated nematode egg detection and counting
</small>
</h1>
<div class="container">
<div class="left-panel">
<!-- Input Selection -->
<div class="card compact">
<h2><i class="ri-upload-cloud-line"></i> Input Selection</h2>
<div class="form-group">
<label for="input-mode">Input Mode</label>
<select id="input-mode" name="input-mode" class="form-control">
<option value="files">Select Image(s)</option>
<option value="folder">Select Folder</option>
<option value="keyence">Keyence Output Folder</option>
</select>
<small class="input-help" style="color: var(--text-muted); margin-top: 0.25rem; display: block;">
<span id="input-mode-help">Choose one or more image files for processing</span>
</small>
</div>
<div class="file-upload" id="drop-zone">
<input type="file" id="file-input" name="files" accept="image/*" multiple hidden>
<i class="ri-upload-cloud-2-line" style="font-size: 2rem; color: var(--primary-color);"></i>
<p class="file-upload-text">
<span id="upload-text">Drag and drop images here or click to browse</span>
<br>
<small style="color: var(--text-muted);">Supported formats: PNG, JPG, TIFF</small>
</p>
<div id="file-list" class="file-list"></div>
</div>
</div>
<!-- Processing -->
<div class="card compact">
<h2><i class="ri-settings-4-line"></i> Processing</h2>
<div class="progress-container">
<div class="progress-info">
<span id="progress-text">Ready to process</span>
<div>
<span id="image-counter" style="margin-right: 1rem;"></span>
<span id="progress-percentage">0%</span>
</div>
</div>
<progress id="progress" value="0" max="100"></progress>
</div>
<button id="start-processing" class="btn-primary">
<i class="ri-play-line"></i>
Start Processing
</button>
</div>
<!-- Confidence Threshold -->
<div class="card compact">
<h2><i class="ri-equalizer-line"></i> Confidence Threshold
<i class="ri-information-line"
data-tooltip="Cutoff value used to filter egg detections.
Recommended range: 0.4 - 0.7.
Higher values reduce the number of false positives but produce more false negatives."
style="margin-left: 0.5rem;"></i>
</h2>
<div class="form-group">
<div class="range-with-value" style="width:100%; display:flex; flex-direction:row; align-items:center; gap:1em;">
<input type="range" id="confidence-threshold" name="confidence-threshold"
min="0.05" max="0.95" step="0.05" value="0.6" list="confidence-ticks" style="width:100%;" autocomplete="off">
<datalist id="confidence-ticks">
<option value="0.05" label="0.05"></option>
<option value="0.10"></option>
<option value="0.15"></option>
<option value="0.20"></option>
<option value="0.25"></option>
<option value="0.30"></option>
<option value="0.35"></option>
<option value="0.40"></option>
<option value="0.45"></option>
<option value="0.50" label="0.50"></option>
<option value="0.55"></option>
<option value="0.60"></option>
<option value="0.65"></option>
<option value="0.70"></option>
<option value="0.75"></option>
<option value="0.80"></option>
<option value="0.85"></option>
<option value="0.90"></option>
<option value="0.95" label="0.95"></option>
</datalist>
<span id="confidence-value" style="font-size:1.1em; min-width:2.5em; text-align:right;">0.6</span>
</div>
</div>
<div id="total-eggs-detected" style="margin-top:0.5em; font-size:1.1em; color:var(--text-muted);">
Total Eggs Detected: <span id="total-eggs-count">0</span>
</div>
<div id="confidence-plot" style="margin-top:1.5rem;"></div>
</div>
<!-- Status Log -->
<div class="card compact">
<h2>
<i class="ri-terminal-box-line"></i>
Status Log
<button id="clear-log" class="btn-secondary" style="margin-left: auto; padding: 0.25rem 0.5rem;">
<i class="ri-delete-bin-line"></i>
</button>
</h2>
<div id="status-output" class="status-log"></div>
</div>
</div>
<div class="right-panel">
<!-- Image Preview -->
<div class="card preview-section">
<h2>
<i class="ri-image-edit-line"></i>
Image Preview
<div class="export-buttons">
<button id="export-csv" class="btn-secondary" disabled>
<i class="ri-file-excel-line"></i>
Export CSV
</button>
<button id="export-images" class="btn-secondary" disabled>
<i class="ri-image-line"></i>
Export Images
</button>
</div>
</h2>
<div class="image-preview" id="image-container">
<img id="preview-image" src="" alt="Preview will appear here">
</div>
<div class="image-info" id="image-info">
Select an image from the results to view
</div>
<div class="image-controls">
<button id="prev-image" class="btn-secondary" disabled>
<i class="ri-arrow-left-s-line"></i>
Previous
</button>
<button id="zoom-out" class="btn-secondary" disabled>
<i class="ri-zoom-out-line"></i>
</button>
<button id="zoom-in" class="btn-secondary" disabled>
<i class="ri-zoom-in-line"></i>
</button>
<button id="next-image" class="btn-secondary" disabled>
Next
<i class="ri-arrow-right-s-line"></i>
</button>
</div>
</div>
<!-- Results -->
<div class="card">
<h2>
<i class="ri-file-list-3-line"></i>
Results
</h2>
<div class="table-container">
<table class="results-table">
<thead>
<tr>
<th data-sort="filename">
Filename
<i class="ri-arrow-up-down-line sort-icon"></i>
</th>
<th data-sort="num_eggs">
Eggs Detected
<i class="ri-arrow-up-down-line sort-icon"></i>
</th>
<th class="text-right">Action</th>
</tr>
</thead>
<tbody>
<!-- Results will be populated here -->
</tbody>
</table>
<!-- Pagination controls -->
<div id="pagination-controls" class="pagination-container">
<!-- Pagination buttons will be generated here -->
</div>
</div>
</div>
</div>
</div>
<script src="{{ url_for('static', filename='script.js') }}"></script>
</body>
</html> |