Update backend/main.py
Browse files- backend/main.py +81 -52
backend/main.py
CHANGED
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@@ -2,21 +2,18 @@ from __future__ import annotations
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import os
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import tempfile
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-
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import numpy as np
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from fastapi import FastAPI, File, UploadFile, HTTPException
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from fastapi.middleware.cors import CORSMiddleware
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from fastapi.staticfiles import StaticFiles
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from fastapi.responses import FileResponse, JSONResponse
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import cv2 # type: ignore
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import joblib # type: ignore
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import tensorflow as tf # type: ignore
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from tensorflow.keras.applications.resnet import preprocess_input
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import os
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os.environ["SM_FRAMEWORK"] = "tf.keras"
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# -----------------------------
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@@ -24,10 +21,10 @@ os.environ["SM_FRAMEWORK"] = "tf.keras"
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# -----------------------------
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MODEL_PATH = os.getenv("MODEL_PATH", "/app/model.keras")
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SCALER_PATH = os.getenv("SCALER_PATH", "/app/scaler.save")
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_model = None
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_scaler = None
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_preprocess_input = None
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def get_model():
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@@ -39,7 +36,7 @@ def get_model():
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"Place your Keras model at /app/model.keras or set MODEL_PATH."
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)
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# compile=False is safer for inference-only deployments
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_model = tf.keras.models.load_model(
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return _model
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@@ -55,39 +52,34 @@ def get_scaler():
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return _scaler
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def get_preprocess_input():
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global _preprocess_input
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if _preprocess_input is None:
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_preprocess_input = sm.get_preprocessing("resnet101")
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return _preprocess_input
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# -----------------------------
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# Preprocessing (as requested)
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# -----------------------------
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def load_data(image_path):
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image = tf.io.read_file(image_path)
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image = tf.io.decode_png(image, channels=3)
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image = tf.image.resize(image, [224, 224], method="bilinear")
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image = tf.cast(image, tf.float32)
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image = preprocess_input(image)
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return image
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-
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def extract_frames_to_pngs(video_bytes: bytes, max_frames: int = 300) -> List[str]:
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"""Decode video bytes with OpenCV and write frames as PNGs to a temp dir.
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Returns a list of PNG file paths.
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"""
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tmpdir = tempfile.mkdtemp(prefix="frames_")
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video_path = os.path.join(tmpdir, "input.mp4")
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with open(video_path, "wb") as f:
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f.write(video_bytes)
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cap = cv2.VideoCapture(video_path)
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if not cap.isOpened():
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raise ValueError("Could not open uploaded video.")
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paths: List[str] = []
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idx = 0
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if not ok:
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break
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# Ensure RGB->BGR handling: OpenCV reads BGR; we'll write PNG in BGR which is fine,
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# because tf.io.decode_png reads the encoded pixels and we treat them as 3 channels.
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out_path = os.path.join(tmpdir, f"frame_{idx:05d}.png")
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cv2.imwrite(out_path, frame)
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paths.append(out_path)
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@@ -110,14 +100,16 @@ def extract_frames_to_pngs(video_bytes: bytes, max_frames: int = 300) -> List[st
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return paths
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def moving_average(x: np.ndarray, window: int = 7) -> np.ndarray:
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if window <= 1:
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return x
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window = min(window, x.shape[0])
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kernel = np.ones(window, dtype=np.float32) / float(window)
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# pad to keep length
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pad = window // 2
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xpad = np.pad(x, (pad, pad), mode="edge")
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return np.convolve(xpad, kernel, mode="valid")
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@@ -128,30 +120,69 @@ def compute_ef(edv: float, esv: float) -> float:
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def classify_heart_function(ef: float) -> str:
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"""Thresholds for EF-based function.
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You asked for best thresholds; without calibration data, we use standard clinical cutoffs:
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- Normal: >= 55
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- Mild dysfunction: 40–54
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- Heart failure: < 40
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"""
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if not np.isfinite(ef):
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return "heart failure"
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if ef >= 55.0:
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return "normal"
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if ef >= 40.0:
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# Frontend expects this exact string union.
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return "mildly dysfunction"
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return "heart failure"
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# -----------------------------
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# FastAPI app
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# -----------------------------
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app = FastAPI()
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# Same-origin by default; allow all just in case spaces routes differ
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app.add_middleware(
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CORSMiddleware,
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allow_origins=["*"],
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@@ -160,38 +191,34 @@ app.add_middleware(
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allow_headers=["*"],
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)
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STATIC_DIR = os.getenv("STATIC_DIR", "/app/static")
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@app.post("/api/analyze")
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async def analyze(video: UploadFile = File(...)):
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if video.content_type is None or "video" not in video.content_type:
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# Some browsers may omit; still attempt
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pass
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video_bytes = await video.read()
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if not video_bytes:
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raise HTTPException(status_code=400, detail="Empty video upload.")
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try:
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frame_paths = extract_frames_to_pngs(
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try:
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# Build a batch tensor [N, 224, 224, 3]
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batch = tf.stack([load_data(p) for p in frame_paths], axis=0)
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model = get_model()
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preds_np =
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preds_np = preds_np.reshape(-1, 1)
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scaler = get_scaler()
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values = scaler.inverse_transform(preds_np).reshape(-1)
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# Smooth
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edv = float(np.max(smooth))
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esv = float(np.min(smooth))
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ef = compute_ef(edv, esv)
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"heartFunction": heart_fn,
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"edv": round(edv, 2),
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"esv": round(esv, 2),
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"numFrames": int(
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}
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except Exception as e:
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raise HTTPException(status_code=500, detail=f"Inference error: {e}")
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import os
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import tempfile
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import traceback
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from typing import List
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import numpy as np
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from fastapi import FastAPI, File, UploadFile, HTTPException
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from fastapi.middleware.cors import CORSMiddleware
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from fastapi.staticfiles import StaticFiles
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import cv2 # type: ignore
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import joblib # type: ignore
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import tensorflow as tf # type: ignore
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from tensorflow.keras.applications.resnet import preprocess_input
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# -----------------------------
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# -----------------------------
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MODEL_PATH = os.getenv("MODEL_PATH", "/app/model.keras")
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SCALER_PATH = os.getenv("SCALER_PATH", "/app/scaler.save")
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STATIC_DIR = os.getenv("STATIC_DIR", "/app/static")
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_model = None
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_scaler = None
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def get_model():
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"Place your Keras model at /app/model.keras or set MODEL_PATH."
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)
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# compile=False is safer for inference-only deployments
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_model = tf.keras.models.load_model(MODEL_PATH, compile=False)
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return _model
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return _scaler
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# -----------------------------
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# Preprocessing (as requested)
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# -----------------------------
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def load_data(image_path: str) -> tf.Tensor:
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image = tf.io.read_file(image_path)
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image = tf.io.decode_png(image, channels=3)
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image = tf.image.resize(image, [224, 224], method="bilinear")
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image = tf.cast(image, tf.float32)
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image = preprocess_input(image) # ResNet preprocessing
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return image
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# -----------------------------
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# Video -> frames
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# -----------------------------
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def extract_frames_to_pngs(video_bytes: bytes, max_frames: int = 300) -> List[str]:
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"""Decode video bytes with OpenCV and write frames as PNGs to a temp dir.
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Returns a list of PNG file paths.
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"""
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tmpdir = tempfile.mkdtemp(prefix="frames_")
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video_path = os.path.join(tmpdir, "input.mp4")
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with open(video_path, "wb") as f:
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f.write(video_bytes)
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cap = cv2.VideoCapture(video_path)
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if not cap.isOpened():
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raise ValueError("Could not open uploaded video. (Unsupported codec/container?)")
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paths: List[str] = []
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idx = 0
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if not ok:
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break
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out_path = os.path.join(tmpdir, f"frame_{idx:05d}.png")
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cv2.imwrite(out_path, frame)
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paths.append(out_path)
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return paths
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# -----------------------------
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# Post-processing helpers
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# -----------------------------
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def moving_average(x: np.ndarray, window: int = 7) -> np.ndarray:
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if window <= 1:
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return x
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window = int(max(1, min(window, x.shape[0])))
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kernel = np.ones(window, dtype=np.float32) / float(window)
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pad = window // 2
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xpad = np.pad(x.astype(np.float32), (pad, pad), mode="edge")
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return np.convolve(xpad, kernel, mode="valid")
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def classify_heart_function(ef: float) -> str:
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if not np.isfinite(ef):
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return "heart failure"
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if ef >= 55.0:
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return "normal"
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if ef >= 40.0:
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return "mildly dysfunction"
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return "heart failure"
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def _normalize_model_output(raw, n_frames: int) -> np.ndarray:
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"""
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Normalize model.predict output to shape (N, 1) float array suitable for scaler.inverse_transform.
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Handles models that return:
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- single array: (N,), (N,1), (N,k), (N,1,1), etc.
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- list/tuple of arrays (multi-output)
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"""
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# Multi-output model: choose the output whose first dim matches number of frames.
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if isinstance(raw, (list, tuple)):
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shapes = [np.asarray(x).shape for x in raw]
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print("PRED LIST SHAPES:", shapes)
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chosen = None
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for r in raw:
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r_arr = np.asarray(r)
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if r_arr.ndim >= 1 and r_arr.shape[0] == n_frames:
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chosen = r_arr
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break
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if chosen is None:
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chosen = np.asarray(raw[0])
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raw_arr = chosen
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else:
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raw_arr = np.asarray(raw)
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print("PRED SHAPE:", raw_arr.shape)
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raw_arr = np.asarray(raw_arr)
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# Force to (N, 1)
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if raw_arr.ndim == 1:
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raw_arr = raw_arr.reshape(-1, 1)
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elif raw_arr.ndim == 2:
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if raw_arr.shape[0] != n_frames:
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# Sometimes outputs come as (1, N) — fix that
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if raw_arr.shape[1] == n_frames:
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raw_arr = raw_arr.T
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# If multiple columns, pick the first by default
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if raw_arr.shape[1] != 1:
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raw_arr = raw_arr[:, :1]
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else:
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# Flatten everything but the frame dimension
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raw_arr = raw_arr.reshape(raw_arr.shape[0], -1)
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raw_arr = raw_arr[:, :1]
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if raw_arr.shape[0] != n_frames:
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raise ValueError(f"Prediction length mismatch: got {raw_arr.shape[0]} but expected {n_frames}")
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return raw_arr.astype(np.float32)
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# -----------------------------
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# FastAPI app
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# -----------------------------
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app = FastAPI()
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app.add_middleware(
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CORSMiddleware,
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allow_origins=["*"],
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allow_headers=["*"],
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)
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@app.post("/api/analyze")
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async def analyze(video: UploadFile = File(...)):
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video_bytes = await video.read()
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if not video_bytes:
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raise HTTPException(status_code=400, detail="Empty video upload.")
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try:
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frame_paths = extract_frames_to_pngs(
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video_bytes,
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max_frames=int(os.getenv("MAX_FRAMES", "300")),
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)
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# Build a batch tensor [N, 224, 224, 3]
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batch = tf.stack([load_data(p) for p in frame_paths], axis=0)
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model = get_model()
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raw_preds = model.predict(batch, verbose=0)
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preds_np = _normalize_model_output(raw_preds, n_frames=batch.shape[0])
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scaler = get_scaler()
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values = scaler.inverse_transform(preds_np).reshape(-1).astype(np.float32)
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# Smooth
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smooth_window = int(os.getenv("SMOOTH_WINDOW", "7"))
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smooth = moving_average(values, window=smooth_window)
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edv = float(np.max(smooth))
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esv = float(np.min(smooth))
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ef = compute_ef(edv, esv)
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"heartFunction": heart_fn,
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"edv": round(edv, 2),
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"esv": round(esv, 2),
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"numFrames": int(values.shape[0]),
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}
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except HTTPException:
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raise
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except Exception as e:
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| 238 |
+
print("ANALYZE ERROR TRACEBACK:\n", traceback.format_exc())
|
| 239 |
raise HTTPException(status_code=500, detail=f"Inference error: {e}")
|
| 240 |
|
| 241 |
|