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Update app.py
Browse files
app.py
CHANGED
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@@ -227,12 +227,10 @@ def create_summary(results, processing_time):
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summary = f"""
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## π Analysis Summary
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-
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**π― Overall Performance:**
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- **Confidence Level:** {confidence_level} ({confidence:.1%})
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- **Processing Speed:** {processing_time:.1f} seconds
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- **Total Entities Extracted:** {total_entities}
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-
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**π Extraction Breakdown:**
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- **Reactants:** {len(data.get('reactants', []))}
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- **Products:** {len(data.get('products', []))}
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@@ -240,7 +238,6 @@ def create_summary(results, processing_time):
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- **Solvents:** {len(data.get('solvents', []))}
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- **Conditions:** {len([v for v in data.get('conditions', {}).values() if v])}
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- **Workup Steps:** {len(data.get('workup', []))}
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-
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**π‘ Quality Assessment:**
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{get_quality_assessment(confidence, total_entities)}
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"""
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@@ -279,3 +276,129 @@ Stir for 12 hours, then cool and filter through celite.
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Purify by column chromatography to obtain 0.85 g of biphenyl derivative (92% yield)."""
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]
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return examples
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summary = f"""
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## π Analysis Summary
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**π― Overall Performance:**
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- **Confidence Level:** {confidence_level} ({confidence:.1%})
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- **Processing Speed:** {processing_time:.1f} seconds
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- **Total Entities Extracted:** {total_entities}
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**π Extraction Breakdown:**
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- **Reactants:** {len(data.get('reactants', []))}
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- **Products:** {len(data.get('products', []))}
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- **Solvents:** {len(data.get('solvents', []))}
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- **Conditions:** {len([v for v in data.get('conditions', {}).values() if v])}
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- **Workup Steps:** {len(data.get('workup', []))}
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**π‘ Quality Assessment:**
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{get_quality_assessment(confidence, total_entities)}
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"""
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Purify by column chromatography to obtain 0.85 g of biphenyl derivative (92% yield)."""
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]
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return examples
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+
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# Create the Gradio interface
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def create_interface():
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"""Create and return the Gradio interface"""
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with gr.Blocks(title="RxNExtract - Chemical Reaction Extraction", theme=gr.themes.Soft()) as demo:
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# Header
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gr.Markdown("""
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# π§ͺ RxNExtract - Chemical Reaction Extraction
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Extract chemical entities and reaction information from synthetic procedures using advanced NLP models.
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""")
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# Model loading section
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with gr.Row():
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with gr.Column(scale=2):
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gr.Markdown("### π€ Model Management")
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load_btn = gr.Button("Load RxNExtract Model", variant="primary", size="lg")
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model_status = gr.Textbox(
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label="Model Status",
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value="Model not loaded. Click 'Load RxNExtract Model' to initialize.",
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interactive=False
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)
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# Main interface
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with gr.Row():
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with gr.Column(scale=1):
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gr.Markdown("### π Input")
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procedure_input = gr.Textbox(
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label="Chemical Procedure",
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placeholder="Enter your chemical synthesis procedure here...",
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lines=8,
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max_lines=15
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)
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with gr.Row():
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temperature_slider = gr.Slider(
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minimum=0.0,
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maximum=1.0,
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value=0.1,
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step=0.1,
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label="Temperature (Model Creativity)",
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info="Lower values = more focused, higher values = more creative"
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)
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with gr.Row():
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analyze_btn = gr.Button("π Analyze Procedure", variant="primary", size="lg")
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clear_btn = gr.Button("ποΈ Clear", variant="secondary")
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# Example procedures
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gr.Markdown("### π Example Procedures")
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examples = get_example_procedures()
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for i, example in enumerate(examples, 1):
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with gr.Accordion(f"Example {i}", open=False):
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gr.Textbox(
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value=example,
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label=f"Example {i}",
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lines=4,
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interactive=False
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)
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gr.Button(f"Use Example {i}", size="sm").click(
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fn=lambda ex=example: ex,
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outputs=procedure_input
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)
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with gr.Column(scale=2):
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gr.Markdown("### π Results")
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# Summary tab
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with gr.Tabs():
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with gr.TabItem("π Summary"):
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summary_output = gr.Markdown()
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with gr.TabItem("π Detailed Results"):
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detailed_output = gr.Markdown()
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with gr.TabItem("π Entity Visualization"):
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entity_plot = gr.Plot()
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with gr.TabItem("π― Confidence & Timing"):
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confidence_plot = gr.Plot()
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# Event handlers
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load_btn.click(
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fn=load_model,
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outputs=model_status
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)
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analyze_btn.click(
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fn=analyze_procedure,
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inputs=[procedure_input, gr.State(True), temperature_slider],
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outputs=[summary_output, detailed_output, entity_plot, confidence_plot]
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)
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clear_btn.click(
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fn=lambda: ("", "", "", "", ""),
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outputs=[procedure_input, summary_output, detailed_output, entity_plot, confidence_plot]
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)
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# Footer
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gr.Markdown("""
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---
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**About RxNExtract:** This tool uses advanced natural language processing to extract chemical entities,
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reaction conditions, and procedural information from synthetic chemistry procedures.
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**Powered by:** Hugging Face Transformers, Gradio, and the ChemPlusX team.
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""")
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return demo
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# Main execution
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if __name__ == "__main__":
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# Create and launch the interface
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demo = create_interface()
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# Launch with appropriate settings for Hugging Face Spaces
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demo.launch(
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server_name="0.0.0.0", # Required for Hugging Face Spaces
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server_port=7860, # Default port for Hugging Face Spaces
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share=False, # Don't create public links
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debug=False, # Disable debug mode in production
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show_error=True # Show errors in the interface
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)
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