Spaces:
Runtime error
Runtime error
Added multi pages
Browse files- app.py +11 -113
- pages/Model_Evaluation.py +129 -0
- pages/Upload_and_Predict.py +44 -0
app.py
CHANGED
|
@@ -1,125 +1,23 @@
|
|
| 1 |
-
# Directory Structure Suggestion:
|
| 2 |
-
# diabetic_retinopathy_app/
|
| 3 |
-
# ├── Home.py (Landing Page)
|
| 4 |
-
# ├── pages/
|
| 5 |
-
# │ ├── 1_Upload_and_Predict.py
|
| 6 |
-
# │ └── 2_Model_Evaluation.py
|
| 7 |
-
# └── assets/
|
| 8 |
-
# └── banner.jpg
|
| 9 |
-
|
| 10 |
-
# Home.py (Landing Page)
|
| 11 |
import streamlit as st
|
| 12 |
from PIL import Image
|
| 13 |
|
| 14 |
def main():
|
| 15 |
st.set_page_config(page_title="DR Assistive Tool", layout="centered")
|
| 16 |
-
st.
|
|
|
|
| 17 |
|
| 18 |
st.markdown("""
|
| 19 |
-
|
| 20 |
-
|
| 21 |
-
#### Features:
|
| 22 |
-
- 🖼️ Upload a retinal image and receive a prediction of its DR stage.
|
| 23 |
-
- 📊 Evaluate model performance using real test datasets.
|
| 24 |
|
| 25 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 26 |
""")
|
| 27 |
|
| 28 |
-
# image = Image.open("assets/banner.jpg") # Optional banner image
|
| 29 |
-
# st.image(image, use_column_width=True)
|
| 30 |
-
|
| 31 |
if __name__ == '__main__':
|
| 32 |
main()
|
| 33 |
-
|
| 34 |
-
|
| 35 |
-
# pages/1_Upload_and_Predict.py
|
| 36 |
-
import streamlit as st
|
| 37 |
-
import torch
|
| 38 |
-
from torchvision import transforms, models
|
| 39 |
-
from PIL import Image
|
| 40 |
-
import numpy as np
|
| 41 |
-
|
| 42 |
-
st.title("📷 Upload & Predict Diabetic Retinopathy")
|
| 43 |
-
|
| 44 |
-
class_names = ['No DR', 'Mild', 'Moderate', 'Severe', 'Proliferative DR']
|
| 45 |
-
|
| 46 |
-
def load_model():
|
| 47 |
-
model = models.densenet121(pretrained=False)
|
| 48 |
-
num_ftrs = model.classifier.in_features
|
| 49 |
-
model.classifier = torch.nn.Linear(num_ftrs, len(class_names))
|
| 50 |
-
model.load_state_dict(torch.load("training/Pretrained_Densenet-121.pth", map_location='cpu'))
|
| 51 |
-
model.eval()
|
| 52 |
-
return model
|
| 53 |
-
|
| 54 |
-
transform = transforms.Compose([
|
| 55 |
-
transforms.Resize(256),
|
| 56 |
-
transforms.CenterCrop(224),
|
| 57 |
-
transforms.ToTensor(),
|
| 58 |
-
transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
|
| 59 |
-
])
|
| 60 |
-
|
| 61 |
-
def predict_image(model, image):
|
| 62 |
-
img_tensor = transform(image).unsqueeze(0)
|
| 63 |
-
with torch.no_grad():
|
| 64 |
-
outputs = model(img_tensor)
|
| 65 |
-
_, pred = torch.max(outputs, 1)
|
| 66 |
-
prob = torch.nn.functional.softmax(outputs, dim=1)[0][pred].item() * 100
|
| 67 |
-
return class_names[pred.item()], prob
|
| 68 |
-
|
| 69 |
-
uploaded_file = st.file_uploader("Choose a retinal image", type=["jpg", "png"])
|
| 70 |
-
if uploaded_file is not None:
|
| 71 |
-
image = Image.open(uploaded_file).convert('RGB')
|
| 72 |
-
st.image(image, caption='Uploaded Retinal Image', use_column_width=True)
|
| 73 |
-
|
| 74 |
-
if st.button("🧠 Predict"):
|
| 75 |
-
with st.spinner('Analyzing image...'):
|
| 76 |
-
model = load_model()
|
| 77 |
-
pred_class, prob = predict_image(model, image)
|
| 78 |
-
st.success(f"Prediction: **{pred_class}** ({prob:.2f}% confidence)")
|
| 79 |
-
|
| 80 |
-
|
| 81 |
-
# pages/2_Model_Evaluation.py
|
| 82 |
-
import streamlit as st
|
| 83 |
-
import torch
|
| 84 |
-
from torch.utils.data import DataLoader
|
| 85 |
-
from torchvision import datasets, transforms, models
|
| 86 |
-
import torch.nn as nn
|
| 87 |
-
from tqdm import tqdm
|
| 88 |
-
|
| 89 |
-
st.title("📈 Model Evaluation on Test Dataset")
|
| 90 |
-
|
| 91 |
-
@st.cache_data
|
| 92 |
-
|
| 93 |
-
def load_test_data():
|
| 94 |
-
transform = transforms.Compose([
|
| 95 |
-
transforms.Resize(256),
|
| 96 |
-
transforms.CenterCrop(224),
|
| 97 |
-
transforms.ToTensor(),
|
| 98 |
-
transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
|
| 99 |
-
])
|
| 100 |
-
test_data = datasets.ImageFolder("test_dataset_path", transform=transform)
|
| 101 |
-
return DataLoader(test_data, batch_size=32, shuffle=False)
|
| 102 |
-
|
| 103 |
-
def evaluate(model, loader):
|
| 104 |
-
model.eval()
|
| 105 |
-
correct, total, loss = 0, 0, 0.0
|
| 106 |
-
criterion = nn.CrossEntropyLoss()
|
| 107 |
-
with torch.no_grad():
|
| 108 |
-
for inputs, labels in loader:
|
| 109 |
-
outputs = model(inputs)
|
| 110 |
-
loss += criterion(outputs, labels).item()
|
| 111 |
-
_, pred = torch.max(outputs, 1)
|
| 112 |
-
correct += (pred == labels).sum().item()
|
| 113 |
-
total += labels.size(0)
|
| 114 |
-
return loss / len(loader), correct / total * 100
|
| 115 |
-
|
| 116 |
-
if st.button("🧪 Evaluate Trained Model"):
|
| 117 |
-
test_loader = load_test_data()
|
| 118 |
-
model = models.densenet121(pretrained=False)
|
| 119 |
-
model.classifier = nn.Linear(model.classifier.in_features, 5)
|
| 120 |
-
model.load_state_dict(torch.load("dr_densenet121.pth", map_location='cpu'))
|
| 121 |
-
model.eval()
|
| 122 |
-
|
| 123 |
-
loss, acc = evaluate(model, test_loader)
|
| 124 |
-
st.write(f"**Test Loss:** {loss:.4f}")
|
| 125 |
-
st.write(f"**Test Accuracy:** {acc:.2f}%")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
import streamlit as st
|
| 2 |
from PIL import Image
|
| 3 |
|
| 4 |
def main():
|
| 5 |
st.set_page_config(page_title="DR Assistive Tool", layout="centered")
|
| 6 |
+
# st.image("assets/banner.jpg", use_column_width=True)
|
| 7 |
+
st.markdown("<h1 style='text-align: center; color: #2E86C1;'>DR Assistive Tool</h1>", unsafe_allow_html=True)
|
| 8 |
|
| 9 |
st.markdown("""
|
| 10 |
+
<h4 style='text-align: center; color: grey;'>An AI-powered assistant for early detection of Diabetic Retinopathy</h4>
|
| 11 |
+
""", unsafe_allow_html=True)
|
|
|
|
|
|
|
|
|
|
| 12 |
|
| 13 |
+
st.markdown("""
|
| 14 |
+
---
|
| 15 |
+
### 🛠 Features:
|
| 16 |
+
- **Upload** retinal images to predict DR stage.
|
| 17 |
+
- **Evaluate** the model using real test datasets.
|
| 18 |
+
|
| 19 |
+
👉 Use the sidebar to navigate between features.
|
| 20 |
""")
|
| 21 |
|
|
|
|
|
|
|
|
|
|
| 22 |
if __name__ == '__main__':
|
| 23 |
main()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
pages/Model_Evaluation.py
ADDED
|
@@ -0,0 +1,129 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import streamlit as st
|
| 2 |
+
import torch
|
| 3 |
+
from torch.utils.data import DataLoader, Dataset
|
| 4 |
+
from torchvision import transforms, models
|
| 5 |
+
import torch.nn as nn
|
| 6 |
+
from PIL import Image
|
| 7 |
+
import pandas as pd
|
| 8 |
+
import os
|
| 9 |
+
import cv2
|
| 10 |
+
import numpy as np
|
| 11 |
+
|
| 12 |
+
st.markdown("<h2 style='color: #2E86C1;'>📈 Model Evaluation</h2>", unsafe_allow_html=True)
|
| 13 |
+
|
| 14 |
+
# Define class names and label map
|
| 15 |
+
class_names = ['No_DR', 'Mild', 'Moderate', 'Severe', 'Proliferative_DR']
|
| 16 |
+
label_map = {label: idx for idx, label in enumerate(class_names)}
|
| 17 |
+
|
| 18 |
+
# Define your image preprocessing functions
|
| 19 |
+
def apply_median_filter(image):
|
| 20 |
+
return cv2.medianBlur(image, 5)
|
| 21 |
+
|
| 22 |
+
def apply_clahe(image):
|
| 23 |
+
lab = cv2.cvtColor(image, cv2.COLOR_RGB2LAB)
|
| 24 |
+
l, a, b = cv2.split(lab)
|
| 25 |
+
clahe = cv2.createCLAHE(clipLimit=2.0, tileGridSize=(8, 8))
|
| 26 |
+
cl = clahe.apply(l)
|
| 27 |
+
merged = cv2.merge((cl, a, b))
|
| 28 |
+
return cv2.cvtColor(merged, cv2.COLOR_LAB2RGB)
|
| 29 |
+
|
| 30 |
+
def apply_gamma_correction(image, gamma=1.5):
|
| 31 |
+
invGamma = 1.0 / gamma
|
| 32 |
+
table = np.array([(i / 255.0) ** invGamma * 255 for i in np.arange(256)]).astype("uint8")
|
| 33 |
+
return cv2.LUT(image, table)
|
| 34 |
+
|
| 35 |
+
def apply_gaussian_filter(image, kernel_size=(5, 5), sigma=1.0):
|
| 36 |
+
return cv2.GaussianBlur(image, kernel_size, sigma)
|
| 37 |
+
|
| 38 |
+
# Custom dataset with preprocessing
|
| 39 |
+
class DDRDataset(Dataset):
|
| 40 |
+
def __init__(self, csv_path, img_dir, transform=None):
|
| 41 |
+
self.data = pd.read_csv(csv_path)
|
| 42 |
+
self.img_dir = img_dir
|
| 43 |
+
self.transform = transform
|
| 44 |
+
|
| 45 |
+
def __len__(self):
|
| 46 |
+
return len(self.data)
|
| 47 |
+
|
| 48 |
+
def __getitem__(self, idx):
|
| 49 |
+
img_name = self.data.iloc[idx, 0]
|
| 50 |
+
label_name = self.data.iloc[idx, 1]
|
| 51 |
+
label = int(label_map.get(label_name, 0)) # fallback to 0
|
| 52 |
+
|
| 53 |
+
img_path = os.path.join(self.img_dir, img_name)
|
| 54 |
+
image = cv2.imread(img_path)
|
| 55 |
+
image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)
|
| 56 |
+
|
| 57 |
+
image = apply_median_filter(image)
|
| 58 |
+
image = apply_clahe(image)
|
| 59 |
+
image = apply_gamma_correction(image)
|
| 60 |
+
image = apply_gaussian_filter(image)
|
| 61 |
+
|
| 62 |
+
image = Image.fromarray(image)
|
| 63 |
+
if self.transform:
|
| 64 |
+
image = self.transform(image)
|
| 65 |
+
|
| 66 |
+
return image, label
|
| 67 |
+
|
| 68 |
+
# -------------------------------
|
| 69 |
+
# Load Test Data with Caching
|
| 70 |
+
# -------------------------------
|
| 71 |
+
@st.cache_resource
|
| 72 |
+
def load_test_data():
|
| 73 |
+
transform = transforms.Compose([
|
| 74 |
+
transforms.Resize((224, 224)),
|
| 75 |
+
transforms.ToTensor(),
|
| 76 |
+
transforms.Normalize([0.485, 0.456, 0.406],
|
| 77 |
+
[0.229, 0.224, 0.225])
|
| 78 |
+
])
|
| 79 |
+
dataset = DDRDataset(
|
| 80 |
+
csv_path="D:/DR_Classification/splits/test_labels.csv",
|
| 81 |
+
img_dir="D:/DR_Classification/splits/test",
|
| 82 |
+
transform=transform
|
| 83 |
+
)
|
| 84 |
+
return DataLoader(dataset, batch_size=32, shuffle=False)
|
| 85 |
+
|
| 86 |
+
# -------------------------------
|
| 87 |
+
# Evaluation Function
|
| 88 |
+
# -------------------------------
|
| 89 |
+
def evaluation_test_model(model, test_loader, criterion, device='cpu'):
|
| 90 |
+
model.eval()
|
| 91 |
+
running_loss = 0.0
|
| 92 |
+
correct = 0
|
| 93 |
+
total = 0
|
| 94 |
+
|
| 95 |
+
with torch.no_grad():
|
| 96 |
+
for inputs, labels in test_loader:
|
| 97 |
+
inputs, labels = inputs.to(device), labels.to(device)
|
| 98 |
+
outputs = model(inputs)
|
| 99 |
+
loss = criterion(outputs, labels)
|
| 100 |
+
|
| 101 |
+
running_loss += loss.item()
|
| 102 |
+
_, predicted = torch.max(outputs, 1)
|
| 103 |
+
correct += (predicted == labels).sum().item()
|
| 104 |
+
total += labels.size(0)
|
| 105 |
+
|
| 106 |
+
val_loss = running_loss / len(test_loader)
|
| 107 |
+
val_acc = correct / total * 100
|
| 108 |
+
return val_loss, val_acc
|
| 109 |
+
|
| 110 |
+
# -------------------------------
|
| 111 |
+
# Evaluation Button Trigger
|
| 112 |
+
# -------------------------------
|
| 113 |
+
if st.button("🔍 Evaluate Trained Model"):
|
| 114 |
+
with st.spinner("Evaluating on test data..."):
|
| 115 |
+
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 116 |
+
|
| 117 |
+
test_loader = load_test_data()
|
| 118 |
+
|
| 119 |
+
model = models.densenet121(pretrained=False)
|
| 120 |
+
model.classifier = nn.Linear(model.classifier.in_features, len(class_names))
|
| 121 |
+
model.load_state_dict(torch.load("training/Pretrained_Densenet-121.pth", map_location=device))
|
| 122 |
+
model.to(device)
|
| 123 |
+
|
| 124 |
+
criterion = nn.CrossEntropyLoss()
|
| 125 |
+
val_loss, val_acc = evaluation_test_model(model, test_loader, criterion, device)
|
| 126 |
+
|
| 127 |
+
st.success("✅ Evaluation Complete")
|
| 128 |
+
st.metric("Test Loss", f"{val_loss:.4f}")
|
| 129 |
+
st.metric("Test Accuracy", f"{val_acc:.2f}%")
|
pages/Upload_and_Predict.py
ADDED
|
@@ -0,0 +1,44 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import streamlit as st
|
| 2 |
+
import torch
|
| 3 |
+
from torchvision import transforms, models
|
| 4 |
+
from PIL import Image
|
| 5 |
+
import numpy as np
|
| 6 |
+
|
| 7 |
+
st.markdown("<h2 style='color: #2E86C1;'>📷 Upload & Predict</h2>", unsafe_allow_html=True)
|
| 8 |
+
|
| 9 |
+
class_names = ['No DR', 'Mild', 'Moderate', 'Severe', 'Proliferative DR']
|
| 10 |
+
|
| 11 |
+
@st.cache_resource
|
| 12 |
+
def load_model():
|
| 13 |
+
model = models.densenet121(pretrained=False)
|
| 14 |
+
model.classifier = torch.nn.Linear(model.classifier.in_features, len(class_names))
|
| 15 |
+
model.load_state_dict(torch.load("training/Pretrained_Densenet-121.pth", map_location='cpu'))
|
| 16 |
+
model.eval()
|
| 17 |
+
return model
|
| 18 |
+
|
| 19 |
+
transform = transforms.Compose([
|
| 20 |
+
transforms.Resize(256),
|
| 21 |
+
transforms.CenterCrop(224),
|
| 22 |
+
transforms.ToTensor(),
|
| 23 |
+
transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
|
| 24 |
+
])
|
| 25 |
+
|
| 26 |
+
def predict_image(model, image):
|
| 27 |
+
img_tensor = transform(image).unsqueeze(0)
|
| 28 |
+
with torch.no_grad():
|
| 29 |
+
outputs = model(img_tensor)
|
| 30 |
+
_, pred = torch.max(outputs, 1)
|
| 31 |
+
prob = torch.nn.functional.softmax(outputs, dim=1)[0][pred].item() * 100
|
| 32 |
+
return class_names[pred.item()], prob
|
| 33 |
+
|
| 34 |
+
uploaded_file = st.file_uploader("📁 Upload Retinal Image", type=["jpg", "png"])
|
| 35 |
+
|
| 36 |
+
if uploaded_file is not None:
|
| 37 |
+
image = Image.open(uploaded_file).convert('RGB')
|
| 38 |
+
st.image(image, caption='🖼 Uploaded Image', use_column_width=True)
|
| 39 |
+
|
| 40 |
+
if st.button("🧠 Predict"):
|
| 41 |
+
with st.spinner('Analyzing image...'):
|
| 42 |
+
model = load_model()
|
| 43 |
+
pred_class, prob = predict_image(model, image)
|
| 44 |
+
st.success(f"🎯 Prediction: **{pred_class}** ({prob:.2f}% confidence)")
|