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| # src/agents.py | |
| import base64 | |
| import os | |
| import logging | |
| import functools | |
| import subprocess | |
| import sys | |
| from io import StringIO | |
| from typing import List, Annotated, Sequence, TypedDict | |
| import operator | |
| from langchain.agents import AgentExecutor, create_openai_tools_agent | |
| from langchain_core.prompts import ChatPromptTemplate, MessagesPlaceholder | |
| from langchain_core.output_parsers.openai_functions import JsonOutputFunctionsParser | |
| from langchain_core.messages import BaseMessage, HumanMessage | |
| from langchain_experimental.tools import PythonREPLTool | |
| from langchain_openai import ChatOpenAI, OpenAI | |
| from langchain_core.messages import AIMessage | |
| from langchain_experimental.agents.agent_toolkits.pandas.base import create_pandas_dataframe_agent | |
| from pydantic import BaseModel, Field, PrivateAttr | |
| from langchain_core.tools import StructuredTool | |
| from langchain.agents.format_scratchpad.openai_tools import ( | |
| format_to_openai_tool_messages, | |
| ) | |
| from langchain.agents.output_parsers.openai_tools import OpenAIToolsAgentOutputParser | |
| from langgraph.graph import StateGraph, END | |
| from langchain.agents.agent_types import AgentType | |
| from langchain_openai import OpenAIEmbeddings | |
| from langchain_community.vectorstores import Chroma | |
| from typing import Any | |
| import streamlit as st | |
| import pandas as pd | |
| import matplotlib.pyplot as plt | |
| from openai import OpenAI | |
| #sys.path | |
| # Get the absolute path of the current file (agents.py) | |
| current_dir = os.path.dirname(os.path.abspath(__file__)) | |
| # Get the parent directory | |
| parent_dir = os.path.abspath(os.path.join(current_dir, '..')) | |
| # Add the parent directory to sys.path | |
| if parent_dir not in sys.path: | |
| sys.path.insert(0, parent_dir) | |
| # Import custom modules | |
| from .search.search_pg_default import pg_search_default | |
| from .search.publication_qa_tool import answer_publication_questions, PublicationQAArgs | |
| from .plotting_tools.hard_agent import plot_master_track_map | |
| from .plotting_tools.oceanographer_tools import plot_ts_diagram | |
| from .prompts import Prompts | |
| from .utils import generate_unique_image_path | |
| from .config import API_KEY | |
| # 1. Search Agent and Tools | |
| class CustomPythonREPLTool(PythonREPLTool): | |
| _datasets: dict = PrivateAttr() | |
| def __init__(self, datasets, **kwargs): | |
| """ | |
| Custom Python REPL tool that injects dataset variables and logs plot generation. | |
| :param datasets: Dictionary { "dataset_1": <DataFrame>, "dataset_2": <DataFrame>, ... } | |
| """ | |
| super().__init__(**kwargs) | |
| self._datasets = datasets | |
| def _run(self, query: str, **kwargs) -> Any: | |
| """ | |
| Execute the user-provided Python code in a local context containing: | |
| - st (Streamlit) | |
| - plt (Matplotlib Pyplot) | |
| - pd (Pandas) | |
| - All loaded dataset variables (self._datasets) | |
| - A dynamically generated plot_path | |
| If a figure is saved to plot_path, a "plot_generated" event will be logged in session_state["execution_history"]. | |
| """ | |
| import streamlit as st | |
| import matplotlib.pyplot as plt | |
| import pandas as pd | |
| import logging | |
| from io import StringIO | |
| from src.utils import log_history_event, generate_unique_image_path | |
| # Prepare local context with necessary packages | |
| local_context = {"st": st, "plt": plt, "pd": pd} | |
| # Inject the user’s datasets under the specified variable names (e.g. dataset_1, dataset_2, etc.) | |
| local_context.update(self._datasets) | |
| # Generate a unique file path for the plot (plot_path) | |
| plot_path = generate_unique_image_path() | |
| local_context['plot_path'] = plot_path | |
| # Redirect stdout so we can capture any output from exec(...) | |
| old_stdout = sys.stdout | |
| redirected_output = StringIO() | |
| sys.stdout = redirected_output | |
| try: | |
| # Execute user code | |
| exec(query, local_context) | |
| output = redirected_output.getvalue() | |
| except ModuleNotFoundError as e: | |
| missing_module = e.name | |
| logging.warning(f"Module '{missing_module}' not found during code execution.") | |
| return { | |
| "error": "ModuleNotFoundError", | |
| "missing_module": missing_module, | |
| "message": f"The Python module '{missing_module}' is not installed." | |
| } | |
| except Exception as e: | |
| logging.error(f"Error during code execution: {e}") | |
| return { | |
| "error": "ExecutionError", | |
| "message": str(e) | |
| } | |
| finally: | |
| # Restore stdout | |
| sys.stdout = old_stdout | |
| # Check if a plot was actually saved to plot_path | |
| plot_generated = False | |
| if os.path.exists(plot_path): | |
| st.session_state.saved_plot_path = plot_path | |
| st.session_state.plot_image = plot_path | |
| st.session_state.new_plot_path = plot_path | |
| plot_generated = True | |
| if plot_generated: | |
| status_message = f"Plot generated = True. Saved at: {plot_path}" | |
| logging.info(status_message) | |
| st.session_state.plot_generated_status = status_message | |
| from src.utils import log_history_event | |
| log_history_event( | |
| st.session_state, | |
| "plot_generated", | |
| { | |
| "plot_path": plot_path.replace("sandbox:", ""), # Remove sandbox prefix | |
| "agent": "VisualizationAgent", | |
| "description": "Python_REPL Generated Plot", | |
| "content": query # Store the actual code used | |
| } | |
| ) | |
| return { | |
| "result": f"Execution completed. Plot saved at: {plot_path if plot_generated else 'No plot generated'}", | |
| "output": output, | |
| "plot_images": [plot_path] if plot_generated else [] | |
| } | |
| def search_pg_datasets_tool(query): | |
| global prompt_search | |
| datasets_info = pg_search_default(query) | |
| logging.debug("Datasets info: %s", datasets_info) | |
| if not datasets_info.empty: | |
| st.session_state.datasets_info = datasets_info | |
| st.session_state.messages_search.append({ | |
| "role": "assistant", | |
| "content": f"**Search query:** {query}" | |
| }) | |
| # Pass the table as JSON (you can use orient="split" or the default, as long as your UI can parse it) | |
| st.session_state.messages_search.append({ | |
| "role": "assistant", | |
| "content": "**Datasets Information:**", | |
| "table": datasets_info.to_json(orient="split") | |
| }) | |
| # Optionally, build a detailed description string for the prompt: | |
| datasets_description = "" | |
| for i, row in datasets_info.iterrows(): | |
| datasets_description += ( | |
| f"Dataset {i + 1}:\n" | |
| f"Name: {row['Name']}\n" | |
| f"Description: {row['Short Description']}\n" | |
| f"Parameters: {row['Parameters']}\n\n" | |
| ) | |
| prompt_search = ( | |
| f"The user has provided the following query: {query}\n" | |
| f"Available datasets:\n{datasets_description}\n" | |
| "Please identify the top two datasets that best match the user's query and explain why they are the most relevant. " | |
| "Do not suggest datasets without values in the Parameters field, because they cannot be directly downloaded.\n" | |
| "Respond using the following schema:\n" | |
| "{dataset name}\n{reason why relevant}\n{propose some short analysis and further questions to answer}" | |
| ) | |
| return datasets_info, prompt_search | |
| def create_search_agent(datasets_info=None): | |
| model_name = st.session_state.get("model_name", "gpt-3.5-turbo") | |
| if model_name == "o3-mini": | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| else: | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| # Generate dataset description string | |
| datasets_description = "" | |
| if datasets_info is not None: | |
| for i, row in datasets_info.iterrows(): | |
| datasets_description += f"Dataset {i + 1}:\nName: {row['Name']}\nDOI: {row['DOI']}\nDescription: {row['Short Description']}\nParameters: {row['Parameters']}\n\n" | |
| prompt = ChatPromptTemplate.from_messages( | |
| [ | |
| ("system", | |
| f"You are a powerful assistant primarily designed to search and retrieve datasets from PANGAEA. Your main goal is to help users find relevant datasets using the search_pg_datasets tool. When a user asks about datasets, always use this tool first to provide the most up-to-date and accurate information.\n\n" | |
| #f"Here are some datasets returned from the search:\n{datasets_description}" | |
| "In addition to dataset searches, you have a secondary capability to answer questions about publications related to specific datasets (or in other words what was published based on this dataset). If a user explicitly asks about publications or research findings based on a particular dataset, you can use the answer_publication_questions tool. For example, you can handle queries like 'What was published based on this dataset?' or 'What were the main conclusions from the research using this dataset?'\n\n" | |
| "Remember:\n" | |
| "1. Prioritize dataset searches using the search_pg_datasets tool. Make sure that the query you pass to the tool is rephrased so that elastic search gives the best match. Also try not to include words like 'search' and etc. in the search query.\n" | |
| "2. Only use the answer_publication_questions tool when the user specifically asks about publications or research findings related to a dataset they've already identified. Please make sure that you correctly pass the doi to the tool. It should be doi retrieved after the search (user will point out which dataset it interested in). DO NOT GENERATE DOI ON THIS STEP OUT OF YOUR MIND! JUST TAKE WHAT WAS GIVEN WITH SYSTEM PROMPT.\n" | |
| "3. If needed, ask the user to clarify which dataset they're referring to before using the publication tool.\n\n" | |
| "Strive to provide accurate, helpful, and concise responses to user queries." | |
| ), | |
| ("user", "{input}"), | |
| MessagesPlaceholder(variable_name="chat_history"), | |
| MessagesPlaceholder(variable_name="agent_scratchpad"), | |
| ] | |
| ) | |
| search_tool = StructuredTool.from_function( | |
| func=search_pg_datasets_tool, | |
| name="search_pg_datasets", | |
| description="List datasets from PANGAEA based on a query" | |
| ) | |
| publication_qa_tool = StructuredTool.from_function( | |
| func=answer_publication_questions, | |
| name="answer_publication_questions", | |
| description="A tool to answer questions about articles published from this dataset. This will be a journal article for which you should provide the tool with an already structured question about what the user wants. The input should be the DOI of the dataset (e.g. 'https://doi.org/10.1594/PANGAEA.xxxxxx') and the question. The question should be reworded to specifically send it to RAG. E.g. the hypothetical user's question 'Are there any related articles to the first dataset? If so what these articles are about?' will be re-worded for this tool as 'What is this article is about?'", | |
| args_schema=PublicationQAArgs | |
| ) | |
| tools = [search_tool, publication_qa_tool] | |
| llm_with_tools = llm.bind_tools(tools) | |
| agent = ( | |
| { | |
| "input": lambda x: x["input"], | |
| "chat_history": lambda x: x.get("chat_history", []), | |
| "agent_scratchpad": lambda x: format_to_openai_tool_messages(x["intermediate_steps"]), | |
| } | |
| | prompt | |
| | llm_with_tools | |
| | OpenAIToolsAgentOutputParser() | |
| ) | |
| return AgentExecutor(agent=agent, tools=tools, verbose=True, max_iterations=5) | |
| # 2. Visualization and Oceanography Tools | |
| class PlotMasterTrackMapArgs(BaseModel): | |
| dataset_var: str = Field(description="The variable name of the dataset to use (e.g., 'dataset_1', 'dataset_2').") | |
| main_title: str = Field(description="The main title for the plot.") | |
| lat_col: str = Field(description="Name of the latitude column.") | |
| lon_col: str = Field(description="Name of the longitude column.") | |
| date_col: str = Field(description="Name of the date/time column.") | |
| class TSPlotToolArgs(BaseModel): | |
| dataset_var: str = Field(description="The variable name of the dataset to use (e.g., 'dataset_1', 'dataset_2').") | |
| main_title: str = Field(description="The main title for the plot.") | |
| temperature_col: str = Field(description="Name of the temperature column.") | |
| salinity_col: str = Field(description="Name of the salinity column.") | |
| # 3. Agent Creation Functions | |
| def create_pandas_agent(user_query, datasets_info): | |
| if st.session_state.model_name == "o3-mini": | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=st.session_state.model_name) | |
| else: | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=st.session_state.model_name) | |
| # Assign unique variable names to each dataframe and collect dataframes | |
| dataset_variables = [] | |
| dataframes = [] | |
| datasets_text = "" # Initialize datasets_text | |
| for i, info in enumerate(datasets_info, 1): # Start enumeration at 1 | |
| var_name = f"df{i}" # Consistently name as df1, df2, etc. | |
| dataframes.append(info['dataset']) # Collect dataframes into a list | |
| dataset_variables.append(var_name) | |
| # Build datasets_text | |
| datasets_text += ( | |
| f"Dataset {i}:\n" # Adjust index to match variable naming | |
| f"Variable Name: {var_name}\n" | |
| f"Name: {info['name']}\n" | |
| f"Description: {info['description']}\n" | |
| f"Head of DataFrame (use it only as an example):\n" | |
| f"{info['df_head']}\n\n" | |
| ) | |
| # Create a custom system prompt that includes information about each dataframe | |
| system_prompt = Prompts.generate_pandas_agent_system_prompt(user_query, datasets_text, dataset_variables) | |
| # Create a ChatPromptTemplate with the system prompt | |
| chat_prompt = ChatPromptTemplate.from_messages( | |
| [ | |
| ("system", system_prompt), | |
| ("user", "{input}"), | |
| MessagesPlaceholder(variable_name="chat_history"), | |
| MessagesPlaceholder(variable_name="agent_scratchpad"), | |
| ] | |
| ) | |
| # Create the pandas dataframe agent with the list of dataframes and the chat prompt | |
| agent_pandas = create_pandas_dataframe_agent( | |
| llm=llm, | |
| df=dataframes, # Pass the list of dataframes | |
| agent_type=AgentType.OPENAI_FUNCTIONS, | |
| verbose=True, | |
| return_intermediate_steps=True, | |
| max_iterations=5, | |
| early_stopping_method="generate", | |
| handle_parsing_errors=True, | |
| #prefix=system_prompt, | |
| suffix=system_prompt, | |
| allow_dangerous_code=True, | |
| chat_prompt=chat_prompt | |
| ) | |
| return agent_pandas | |
| # Define the function to encode the image | |
| def encode_image(image_path): | |
| with open(image_path, "rb") as image_file: | |
| return base64.b64encode(image_file.read()).decode('utf-8') | |
| def reflect_on_image(image_path: str) -> str: | |
| if not os.path.exists(image_path): | |
| return f"Error: The file {image_path} does not exist." | |
| base64_image = encode_image(image_path) | |
| prompt = """You are a professional reviewer of scientific images. Your task is to provide review and pass it back to the visual creator agent, so that it could improve it. At each step provide idea for improvements (only if necessary). Be sure to be critical and provide a source for improvement. Conduct a quality check of the provided image using the following criteria: | |
| 1. Axis and Font Quality: Evaluate the visibility of axes and appropriateness of font size and style. Are the axes clearly visible and labeled? Is the font legible and suitable for the image size? | |
| 2. Label Clarity: Assess if labels are well-positioned and not overlapping. Are all labels clearly readable and properly placed? | |
| 3. Color Scheme: Analyze the color choices. Is the color scheme appropriate for the data presented? Are the colors distinguishable and not causing visual confusion? | |
| 4. Data Representation: Evaluate how well the data is represented. Are data points clearly visible? Is the chosen chart or graph type appropriate for the data? | |
| 5. Legend and Scale: Check the presence and clarity of legends and scales. Are they present when necessary and easy to understand? | |
| 6. Overall Layout: Assess the overall layout and use of space. Is the image well-balanced and visually appealing? | |
| 7. Technical Issues: Identify any technical problems such as pixelation, blurriness, or artifacts that might affect the image quality. | |
| 8. Scientific Accuracy: To the best of your ability, comment on whether the image appears scientifically accurate and free from obvious errors or misrepresentations. | |
| 9. Check that the figure make sense from an observing human's point of view, for example, if the figure have a variable ‘Depth of water or smth’ it should be on the Y-AXIS and go from surface to depth, so minimum at the top, max depth in the bottom. If there are remarks about these things, severely underestimate the final mark for the figure and force agent to redo the graph, with precise instructions. SUPER IMPORTANT -> IF DEPTH OF WATER OR ANY VERTICAL DIMENSIONS ARE PRESENT, AND THEY ARE ON THE HORIZONTAL X-AXIS, AND NOT ON Y-AXIS, RETURN FIGURE BACK WITH SCORE 1/10, PUNISH SEVERELY FOR THIS! <- SUPER IMPORTANT | |
| Please provide a structured review addressing each of these points. Conclude with an overall assessment of the image quality, highlighting any significant issues or exemplary aspects. Finally, give the image a score out of 10, where 10 is perfect quality and 1 is unusable. | |
| """ | |
| openai_client = OpenAI(api_key=API_KEY) | |
| response = openai_client.chat.completions.create( | |
| model="gpt-4o", | |
| messages=[ | |
| { | |
| "role": "user", | |
| "content": [ | |
| {"type": "text", "text": prompt}, | |
| { | |
| "type": "image_url", | |
| "image_url": { | |
| "url": f"data:image/png;base64,{base64_image}" | |
| } | |
| } | |
| ] | |
| } | |
| ], | |
| max_tokens=1000 | |
| ) | |
| return response.choices[0].message.content | |
| # Define the args schema for reflect_on_image | |
| class ReflectOnImageArgs(BaseModel): | |
| image_path: str = Field(description="The path to the image to reflect on.") | |
| # Define the reflect_on_image tool | |
| reflect_tool = StructuredTool.from_function( | |
| func=reflect_on_image, | |
| name="reflect_on_image", | |
| description="A tool to reflect on an image and provide feedback for improvements.", | |
| args_schema=ReflectOnImageArgs | |
| ) | |
| #Planning tool | |
| class PlanningToolArgs(BaseModel): | |
| goal: str = Field( | |
| description="A short statement of the user's main objective or question to create a plan for." | |
| ) | |
| constraints: List[str] = Field( | |
| default_factory=list, | |
| description="Any constraints or conditions to be respected in the plan (e.g., time or resource constraints)." | |
| ) | |
| user_query: str = Field( | |
| default="", | |
| description="The original user query or question that triggered the plan request." | |
| ) | |
| datasets_summary: str = Field( | |
| default="", | |
| description="A concise summary of the current datasets or project context that the plan should consider." | |
| ) | |
| def planning_tool( | |
| goal: str, | |
| constraints: List[str], | |
| user_query: str, | |
| datasets_summary: str | |
| ) -> dict: | |
| """ | |
| A planning function that uses a ChatCompletion to create a step-by-step plan, | |
| referencing the user query, constraints, and dataset info for context. | |
| Returns a dict with at least "messages" so it updates the state in langgraph. | |
| """ | |
| from langchain_openai import ChatOpenAI | |
| from langchain_core.messages import AIMessage, SystemMessage, HumanMessage | |
| # Create a system prompt that instructs the LLM how to create the plan: | |
| system_prompt = ( | |
| "You are an advanced 'PlanningTool' that must generate a step-by-step plan. " | |
| "Consider the user’s ultimate goal, the constraints, the original query, and the dataset context. " | |
| "Respond with a thorough but concise plan that can be used by the system to coordinate tasks." | |
| ) | |
| # We'll build a user message that includes all relevant info: | |
| # (goal, constraints, user_query, and the dataset summary). | |
| user_message = ( | |
| f"Goal: {goal}\n\n" | |
| f"Constraints: {constraints}\n\n" | |
| f"User Query: {user_query}\n\n" | |
| f"Dataset Info:\n{datasets_summary}\n\n" | |
| "Please produce a plan with carefully enumerated steps." | |
| ) | |
| # Create an LLM instance | |
| model_name = st.session_state.get("model_name", "gpt-3.5-turbo") | |
| if model_name == "o3-mini": | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| else: | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| # Construct messages for the chat | |
| messages = [ | |
| SystemMessage(content=system_prompt), | |
| HumanMessage(content=user_message) | |
| ] | |
| # Call the LLM | |
| response = llm(messages) | |
| # The text of the plan is in response.content | |
| final_plan_text = response.content | |
| # Return a dictionary that merges into state["messages"] | |
| # (this is how the graph update won't fail with InvalidUpdateError) | |
| return { | |
| "messages": [ | |
| AIMessage(content=final_plan_text, name="Planner") | |
| ] | |
| } | |
| def install_package(package_name: str, pip_options: str = ""): | |
| #ALLOWED_PACKAGES = {"matplotlib", "seaborn", "plotly", "pandas", "numpy", "gsw", "scipy"} | |
| #if package_name not in ALLOWED_PACKAGES: | |
| # return f"Installation of package '{package_name}' is not allowed." | |
| try: | |
| command = [sys.executable, '-m', 'pip', 'install'] + pip_options.split() + [package_name] | |
| subprocess.check_call(command) | |
| return f"Package '{package_name}' installed successfully." | |
| except Exception as e: | |
| return f"Failed to install package '{package_name}': {e}" | |
| # Define the args schema for install_package | |
| class InstallPackageArgs(BaseModel): | |
| package_name: str = Field(description="The name of the package to install.") | |
| pip_options: str = Field(default="", description="Additional pip options (e.g., '--force-reinstall').") | |
| # Create the install_package_tool | |
| install_package_tool = StructuredTool.from_function( | |
| func=install_package, | |
| name="install_package", | |
| description="Installs a Python package using pip. Use this tool if you encounter a ModuleNotFoundError or need a package that's not installed.", | |
| args_schema=InstallPackageArgs | |
| ) | |
| def get_example_of_visualizations(query: str) -> str: | |
| """ | |
| Retrieves example visualizations related to the query. | |
| Parameters: | |
| - query (str): The user's query about plotting. | |
| Returns: | |
| - str: The content of the most relevant example file. | |
| """ | |
| # Initialize embeddings | |
| #api_key = st.secrets["general"]["openai_api_key"] | |
| embeddings = OpenAIEmbeddings(api_key=API_KEY) | |
| # Load the existing vector store | |
| vector_store = Chroma( | |
| collection_name="example_collection", | |
| embedding_function=embeddings, | |
| persist_directory=os.path.join('data', 'examples_database', 'chroma_langchain_notebooks') | |
| ) | |
| # Perform a similarity search | |
| results = vector_store.similarity_search_with_score(query, k=1) | |
| # Extract the most relevant document | |
| doc, score = results[0] | |
| # Construct the full path to the txt file | |
| file_name = doc.metadata['source'].lstrip('./') | |
| full_path = os.path.join('data', 'examples_database', file_name) | |
| # Read and return the content of the txt file | |
| try: | |
| with open(full_path, 'r', encoding='utf-8') as file: | |
| content = file.read() | |
| return content | |
| except Exception as e: | |
| logging.error(f"An error occurred while reading the file: {str(e)}") | |
| return "" # Return empty string if error occurs | |
| class ExampleVisualizationArgs(BaseModel): | |
| query: str = Field(description="The user's query about plotting.") | |
| example_visualization_tool = StructuredTool.from_function( | |
| func=get_example_of_visualizations, | |
| name="get_example_of_visualizations", | |
| description="Retrieves example visualization code related to the user's query.", | |
| args_schema=ExampleVisualizationArgs | |
| ) | |
| ######################################## | |
| # 1) DEFINE THE TOOL FOR LISTING FILES # | |
| ######################################## | |
| class ListPlottingDataFilesArgs(BaseModel): | |
| # No arguments needed here if it just lists everything | |
| dummy: str = Field(default="", description="(No arguments needed)") | |
| def list_plotting_data_files(dummy: str = "") -> str: | |
| """ | |
| Lists all files and subdirectories under data/plotting_data. | |
| Returns a single string containing each path on a new line. | |
| """ | |
| base_dir = os.path.join("data", "plotting_data") | |
| all_paths = [] | |
| for root, dirs, files in os.walk(base_dir): | |
| # Optionally skip hidden dirs/files, etc. | |
| for filename in files: | |
| rel_path = os.path.relpath(os.path.join(root, filename), start=base_dir) | |
| all_paths.append(rel_path) | |
| if not all_paths: | |
| return "No files found in data/plotting_data." | |
| return "Files under data/plotting_data:\n" + "\n".join(all_paths) | |
| list_plotting_data_files_tool = StructuredTool.from_function( | |
| func=list_plotting_data_files, | |
| name="list_plotting_data_files", | |
| description="Lists all files under data/plotting_data directory (including subfolders).", | |
| args_schema=ListPlottingDataFilesArgs | |
| ) | |
| def create_visualization_agent(user_query, datasets_info): | |
| datasets_text = "" # Initialize datasets_text | |
| dataset_variables = [] | |
| datasets = {} | |
| for i, info in enumerate(datasets_info): | |
| var_name = f"dataset_{i + 1}" | |
| datasets[var_name] = info['dataset'] | |
| dataset_variables.append(var_name) | |
| # Build datasets_text | |
| datasets_text += ( | |
| f"Dataset {i + 1}:\n" | |
| f"Variable Name: {var_name}\n" | |
| f"Name: {info['name']}\n" | |
| f"Description: {info['description']}\n" | |
| f"Head of DataFrame (use it only as an example):\n" | |
| f"{info['df_head']}\n\n" | |
| ) | |
| # Generate the system prompt using datasets_text | |
| prompt = Prompts.generate_visualization_agent_system_prompt(user_query, datasets_text, dataset_variables) | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=st.session_state.model_name) | |
| repl_tool = CustomPythonREPLTool(datasets=datasets) | |
| tools_vis = [ | |
| repl_tool, | |
| reflect_tool, | |
| install_package_tool, | |
| example_visualization_tool, | |
| list_plotting_data_files_tool | |
| ] | |
| agent_visualization = create_openai_tools_agent( | |
| llm, | |
| tools=tools_vis, | |
| prompt=ChatPromptTemplate.from_messages( | |
| [ | |
| ("system", prompt), | |
| MessagesPlaceholder(variable_name="messages"), | |
| MessagesPlaceholder(variable_name="agent_scratchpad") | |
| ] | |
| ) | |
| ) | |
| return AgentExecutor( | |
| agent=agent_visualization, | |
| tools=tools_vis, | |
| verbose=True, | |
| handle_parsing_errors=True, | |
| return_intermediate_steps=True | |
| ) | |
| def create_hard_coded_visualization_agent(user_query, datasets_info): | |
| import streamlit as st | |
| model_name = st.session_state.get("model_name", "gpt-3.5-turbo") | |
| if model_name == "o3-mini": | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| else: | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| # Prepare datasets | |
| datasets = {} | |
| datasets_text = "" | |
| dataset_variables = [] | |
| for i, info in enumerate(datasets_info): | |
| var_name = f"dataset_{i + 1}" | |
| datasets[var_name] = info['dataset'] | |
| dataset_variables.append(var_name) | |
| datasets_text += ( | |
| f"Dataset {i + 1}:\n" | |
| f"Variable Name: {var_name}\n" | |
| f"Name: {info['name']}\n" | |
| f"Description: {info['description']}\n" | |
| f"Head of DataFrame (select appropriate attributes based on this):\n" | |
| f"{info['df_head']}\n\n" | |
| ) | |
| # Generate the system prompt | |
| system_prompt = Prompts.generate_system_prompt_hard_coded_visualization(user_query, datasets_text, dataset_variables) | |
| def plot_master_track_map_tool(dataset_var, main_title, lat_col, lon_col, date_col): | |
| dataset_df = datasets.get(dataset_var) | |
| if dataset_df is None: | |
| return {"result": f"Dataset '{dataset_var}' not found."} | |
| return plot_master_track_map(main_title=main_title, lat_col=lat_col, lon_col=lon_col, date_col=date_col, dataset_df=dataset_df) | |
| # Define visualization tools | |
| visualization_functions = [ | |
| StructuredTool.from_function( | |
| func=plot_master_track_map_tool, | |
| name="plot_master_track_map_tool", | |
| description="Plot the master track map using the specified dataset.", | |
| args_schema=PlotMasterTrackMapArgs | |
| ) | |
| ] | |
| # Create the agent with tools and prompt | |
| agent = create_openai_tools_agent( | |
| llm, | |
| tools=visualization_functions, | |
| prompt=ChatPromptTemplate.from_messages( | |
| [ | |
| ("system", system_prompt), | |
| MessagesPlaceholder(variable_name="messages"), | |
| MessagesPlaceholder(variable_name="agent_scratchpad") | |
| ] | |
| ) | |
| ) | |
| return AgentExecutor(agent=agent, tools=visualization_functions) | |
| # Create Oceanographer Agent | |
| def create_oceanographer_agent(user_query, datasets_info): | |
| import streamlit as st | |
| model_name = st.session_state.get("model_name", "gpt-3.5-turbo") | |
| if model_name == "o3-mini": | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| else: | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| # Prepare datasets | |
| datasets = {} | |
| datasets_text = "" | |
| dataset_variables = [] | |
| for i, info in enumerate(datasets_info): | |
| var_name = f"dataset_{i + 1}" | |
| datasets[var_name] = info['dataset'] | |
| dataset_variables.append(var_name) | |
| datasets_text += ( | |
| f"Dataset {i + 1}:\n" | |
| f"Variable Name: {var_name}\n" | |
| f"Name: {info['name']}\n" | |
| f"Description: {info['description']}\n" | |
| f"Head of DataFrame (select appropriate attributes based on this):\n" | |
| f"{info['df_head']}\n\n" | |
| ) | |
| # Generate the system prompt | |
| system_prompt = Prompts.generate_system_prompt_oceanographer(user_query, datasets_text, dataset_variables) | |
| def plot_ts_diagram_tool(dataset_var, main_title, temperature_col, salinity_col): | |
| dataset_df = datasets.get(dataset_var) | |
| if dataset_df is None: | |
| return {"result": f"Dataset '{dataset_var}' not found."} | |
| return plot_ts_diagram(main_title=main_title, temperature_col=temperature_col, salinity_col=salinity_col, dataset_df=dataset_df) | |
| # Define oceanography tools | |
| oceanography_functions = [ | |
| StructuredTool.from_function( | |
| func=plot_ts_diagram_tool, | |
| name="plot_ts_diagram_tool", | |
| description="Plot TS diagram using the specified dataset.", | |
| args_schema=TSPlotToolArgs | |
| ) | |
| ] | |
| # Create the agent with tools and prompt | |
| agent = create_openai_tools_agent( | |
| llm, | |
| tools=oceanography_functions, | |
| prompt=ChatPromptTemplate.from_messages( | |
| [ | |
| ("system", system_prompt), | |
| MessagesPlaceholder(variable_name="messages"), | |
| MessagesPlaceholder(variable_name="agent_scratchpad") | |
| ] | |
| ) | |
| ) | |
| return AgentExecutor(agent=agent, tools=oceanography_functions) | |
| def initialize_agents(user_query, datasets_info): | |
| if datasets_info: | |
| # Create agents | |
| visualization_agent = create_visualization_agent( | |
| user_query=user_query, | |
| datasets_info=datasets_info | |
| ) | |
| dataframe_agent = create_pandas_agent( | |
| user_query=user_query, | |
| datasets_info=datasets_info | |
| ) | |
| hard_coded_visualization_agent = create_hard_coded_visualization_agent( | |
| user_query=user_query, | |
| datasets_info=datasets_info | |
| ) | |
| oceanographer_agent = create_oceanographer_agent( | |
| user_query=user_query, | |
| datasets_info=datasets_info | |
| ) | |
| return visualization_agent, dataframe_agent, hard_coded_visualization_agent, oceanographer_agent | |
| else: | |
| st.warning("No datasets loaded. Please load datasets first.") | |
| return None, None, None, None | |
| def agent_node(state, agent, name): | |
| import streamlit as st # Ensure Streamlit is imported | |
| logging.debug(f"Entering agent_node for {name}") | |
| if 'agent_scratchpad' not in state or not isinstance(state['agent_scratchpad'], list): | |
| state['agent_scratchpad'] = [] | |
| user_messages = [msg for msg in state["messages"] if isinstance(msg, HumanMessage)] | |
| if user_messages: | |
| last_user_message = user_messages[-1].content | |
| state['input'] = last_user_message | |
| else: | |
| state['input'] = state.get('input', '') | |
| if 'plot_images' not in state or not isinstance(state['plot_images'], list): | |
| state['plot_images'] = [] | |
| # Invoke the agent | |
| result = agent.invoke(state) | |
| last_message_content = result.get("output", "") | |
| intermediate_steps = result.get("intermediate_steps", []) | |
| returned_plot_images = result.get("plot_images", []) # Gather newly returned images | |
| # Store intermediate steps | |
| if 'intermediate_steps' not in st.session_state: | |
| st.session_state['intermediate_steps'] = [] | |
| st.session_state['intermediate_steps'].extend(intermediate_steps) | |
| from src.utils import log_history_event | |
| for step in intermediate_steps: | |
| action = step[0] | |
| observation = step[1] | |
| tool_name = action.tool | |
| tool_input = action.tool_input | |
| log_history_event( | |
| st.session_state, | |
| "tool_usage", | |
| { | |
| "agent_name": name, | |
| "tool_name": tool_name, | |
| "tool_input": tool_input, | |
| "observation": observation | |
| } | |
| ) | |
| # If a ModuleNotFoundError was returned | |
| if name == "VisualizationAgent": | |
| if isinstance(last_message_content, dict): | |
| if last_message_content.get("error") == "ModuleNotFoundError": | |
| missing_module = last_message_content.get("missing_module") | |
| logging.info(f"Detected missing module: {missing_module}") | |
| install_result = install_package_tool.run({"package_name": missing_module}) | |
| logging.info(f"Install package result: {install_result}") | |
| if "successfully" in install_result: | |
| retry_result = agent.invoke(state) | |
| last_message_content = retry_result.get("output", "") | |
| else: | |
| last_message_content = f"Failed to install the missing package '{missing_module}'. Please install it manually." | |
| # Check if a new plot path was set in session_state | |
| new_plot_path = st.session_state.get("new_plot_path") | |
| logging.info(f"New plot path from session state: {new_plot_path}") | |
| if new_plot_path: | |
| if os.path.exists(new_plot_path): | |
| state["plot_images"].append(new_plot_path) | |
| st.session_state.new_plot_path = None | |
| log_history_event( | |
| st.session_state, | |
| "plot_generated", # Use consistent event type | |
| { | |
| "plot_path": new_plot_path, | |
| "agent_name": name, | |
| "description": f"Plot generated by {name}" | |
| } | |
| ) | |
| if new_plot_path: | |
| log_history_event( | |
| st.session_state, | |
| "plot_generated_final", | |
| {"plot_path": new_plot_path} | |
| ) | |
| # Combine the newly returned images with state images | |
| all_plot_images = list(returned_plot_images) + state["plot_images"] | |
| # Create a new AIMessage with additional info. | |
| # Note: We add a "plot" field so that it appears in the final JSON. | |
| ai_message = AIMessage( | |
| content=last_message_content, | |
| name=name, | |
| additional_kwargs={ | |
| "plot_images": all_plot_images, | |
| "plot": all_plot_images[0] if all_plot_images else None | |
| } | |
| ) | |
| state["messages"].append(ai_message) | |
| # Trim messages if needed | |
| state["messages"] = state["messages"][-7:] | |
| if name == "VisualizationAgent": | |
| state["visualization_agent_used"] = True | |
| state["last_agent_message"] = last_message_content | |
| return state | |
| def supervisor_response(state): | |
| import streamlit as st | |
| from main import get_datasets_info_for_active_datasets # Adjust import as needed | |
| model_name = st.session_state.get("model_name", "gpt-3.5-turbo") | |
| if model_name == "o3-mini": | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| else: | |
| llm = ChatOpenAI(api_key=API_KEY, model_name=model_name) | |
| # Build dataset context from the active (selected) datasets only. | |
| active_datasets_info = get_datasets_info_for_active_datasets(st.session_state) | |
| datasets_text = "" | |
| if active_datasets_info: | |
| for i, info in enumerate(active_datasets_info, 1): | |
| datasets_text += ( | |
| f"Dataset {i}:\n" | |
| f"Name: {info['name']}\n" | |
| f"DOI: {info['doi']}\n" | |
| f"Description: {info['description']}\n" | |
| f"Parameters: {info.get('parameters', '')}\n\n" | |
| ) | |
| else: | |
| datasets_text = "No active dataset selected." | |
| # Build the system prompt using the active dataset context. | |
| system_message = ( | |
| "You are a supervisor capable of answering simple questions directly. " | |
| "If the user's query is basic (e.g., about available analysis), " | |
| "answer using the selected dataset context below:\n\n" | |
| f"{datasets_text}\n\n" | |
| "For complex queries, follow these agent guidelines:\n" | |
| "- Use VisualizationAgent for general plotting\n" | |
| "- Use HardCodedVisualizationAgent ONLY for track maps\n" | |
| "- Use OceanographerAgent ONLY for TS diagrams\n" | |
| "Format any code in markdown and keep responses concise." | |
| ) | |
| # Build the complete conversation history. | |
| # Here we include both human and assistant messages with labels. | |
| full_history = "\n".join([ | |
| f"{msg.name}: {msg.content}" for msg in state["messages"] if hasattr(msg, "content") and hasattr(msg, "name") | |
| ]) | |
| prompt = f"{system_message}\n\nConversation history:\n{full_history}" | |
| # Invoke the LLM with the full conversation context. | |
| response = llm.invoke([HumanMessage(content=prompt)]) | |
| # Append the supervisor's answer to the state and mark the conversation as finished. | |
| state["messages"].append(AIMessage(content=response.content, name="Supervisor")) | |
| state["next"] = "FINISH" | |
| return state | |
| def create_supervisor_agent(user_query, datasets_info, memory): | |
| members = ["VisualizationAgent", "DataFrameAgent", "HardCodedVisualizationAgent", "OceanographerAgent"] | |
| # Prepare datasets_text and dataset_variables | |
| datasets_text = "" | |
| dataset_variables = [] | |
| datasets = {} | |
| for i, info in enumerate(datasets_info): | |
| var_name = f"df{i}" if i > 0 else "df" | |
| datasets_text += ( | |
| f"Dataset {i + 1}:\n" | |
| f"Variable Name: {var_name}\n" | |
| f"Name: {info['name']}\n" | |
| f"Description: {info['description']}\n" | |
| f"Head of DataFrame (use it only as an example):\n" | |
| f"{info['df_head']}\n\n" | |
| ) | |
| dataset_variables.append(var_name) | |
| datasets[var_name] = info['dataset'] | |
| system_prompt_supervisor = ( | |
| f"You are a supervisor tasked with managing a conversation between the following workers: {members}. " | |
| f"Given the following user request: '{user_query}', determine and instruct the next worker to act. " | |
| f"Each worker will perform a task and respond with their results and status. " | |
| f"If the request involves plotting a master track, directly assign the task to the HardCodedVisualizationAgent. " | |
| f"For TS diagram, assign the task to the OceanographerAgent. The other requests should be handled by the VisualizationAgent. It is extremely important to assign the correct task to the correct agent and use HardCodedVisualizationAgent and OceanographerAgent only for the described cases.\n" | |
| f"If a meaningful response from the agent has been provided, end the process by returning 'FINISH' and not 'RESPOND' to avoid unnecessary loops.\n" | |
| f"The dataset info is:\n{datasets_text}\n" | |
| f"### Agents and Their Capabilities:\n" | |
| "- **VisualizationAgent:** A major visualization tool to be called. Generates various plots using the dataset with tools like Python_REPL, reflect_on_image, install_package, and get_example_of_visualizations.\n" | |
| "- **DataFrameAgent:** Performs data analysis and manipulation on the dataset using pandas.\n" | |
| "- **HardCodedVisualizationAgent:** Only can plot master track map using predefined functions (call only if you are 100% sure that you need a master track map from an expedition; otherwise, call VisualizationAgent).\n" | |
| "- **OceanographerAgent:** Only can plot TS diagrams (call only if you are 100% sure that you need to create a TS diagram; otherwise, call VisualizationAgent).\n\n" | |
| f"### Available Tools:\n" | |
| f"- **Python_REPL:** Executes Python code for data analysis and visualization.\n" | |
| f"- **reflect_on_image:** Provides feedback on generated images to improve their quality.\n" | |
| f"- **install_package:** Installs necessary Python packages when encountering missing modules.\n" | |
| f"- **get_example_of_visualizations:** Retrieves example visualization code related to user queries.\n" | |
| f"\n" | |
| f"The datasets are accessible via variables: {', '.join(dataset_variables)}.\n" | |
| ) | |
| # Define the function for routing the next task | |
| function_def = { | |
| "name": "route", | |
| "description": "Select the next role.", | |
| "parameters": { | |
| "title": "routeSchema", | |
| "type": "object", | |
| "properties": { | |
| "next": { | |
| "title": "Next", | |
| "anyOf": [ | |
| {"enum": ["FINISH", "RESPOND"] + members}, | |
| ], | |
| } | |
| }, | |
| "required": ["next"], | |
| }, | |
| } | |
| # Create the supervisor chain | |
| prompt_supervisor = ChatPromptTemplate.from_messages( | |
| [ | |
| ("system", system_prompt_supervisor), | |
| MessagesPlaceholder(variable_name="messages"), | |
| MessagesPlaceholder(variable_name="agent_scratchpad"), | |
| ("system", | |
| f"Given the conversation above, decide who should act next. Options are: ['FINISH', 'RESPOND'] + {members}.\n" | |
| "Select 'FINISH' if the last agent has provided a meaningful and complete response to the user's query.\n" | |
| "Select 'RESPOND' if you need to provide additional information or clarification to the user.\n" | |
| "Otherwise, select the next agent to act.\n" | |
| f"The last agent message was: {{last_agent_message}}") | |
| ] | |
| ).partial(options=str(["FINISH", "RESPOND"] + members), members=", ".join(members)) | |
| llm_supervisor = ChatOpenAI(api_key=API_KEY, model_name=st.session_state.model_name) | |
| supervisor_chain = ( | |
| { | |
| "messages": lambda x: x["messages"], | |
| "agent_scratchpad": lambda x: x["agent_scratchpad"], | |
| "last_agent_message": lambda x: x.get("last_agent_message", ""), | |
| } | |
| | prompt_supervisor | |
| | llm_supervisor.bind_functions(functions=[function_def], function_call="route") | |
| | JsonOutputFunctionsParser() | |
| ) | |
| # Define the AgentState type | |
| class AgentState(TypedDict): | |
| messages: Sequence[BaseMessage] | |
| next: str | |
| agent_scratchpad: Sequence[BaseMessage] | |
| user_query: str | |
| last_agent_message: str | |
| plot_images: List[str] | |
| model_name: str | |
| # Create the workflow graph | |
| workflow = StateGraph(AgentState) | |
| visualization_agent, dataframe_agent, hard_coded_visualization_agent, oceanographer_agent = initialize_agents( | |
| user_query, datasets_info | |
| ) | |
| # Add agents to the workflow if they are successfully initialized | |
| if visualization_agent and dataframe_agent and hard_coded_visualization_agent and oceanographer_agent: | |
| workflow.add_node("VisualizationAgent", | |
| functools.partial(agent_node, agent=visualization_agent, name="VisualizationAgent")) | |
| workflow.add_node("DataFrameAgent", functools.partial(agent_node, agent=dataframe_agent, name="DataFrameAgent")) | |
| workflow.add_node("HardCodedVisualizationAgent", | |
| functools.partial(agent_node, agent=hard_coded_visualization_agent, | |
| name="HardCodedVisualizationAgent")) | |
| workflow.add_node("OceanographerAgent", | |
| functools.partial(agent_node, agent=oceanographer_agent, name="OceanographerAgent")) | |
| workflow.add_node("supervisor", supervisor_chain) | |
| workflow.add_node("supervisor_response", supervisor_response) | |
| # Connect agents to the supervisor | |
| for member in members: | |
| workflow.add_edge(member, "supervisor") | |
| # Define the conditional map for routing | |
| conditional_map = {k: k for k in members} | |
| conditional_map["FINISH"] = END | |
| conditional_map["RESPOND"] = "supervisor_response" | |
| workflow.add_conditional_edges("supervisor", lambda x: x["next"], conditional_map) | |
| workflow.set_entry_point("supervisor") | |
| #memory = MemorySaver() | |
| # Compile the workflow into a graph | |
| graph = workflow.compile(checkpointer=memory) | |
| return graph | |
| else: | |
| return None |