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Update env.py
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env.py
CHANGED
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@@ -90,6 +90,9 @@ class ClinicalTrialEnvironment(
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) -> ClinicalTrialObservation:
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del seed, kwargs
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selected_task_id = task_id or self._next_task_id()
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self._current_scenario = self._scenarios[selected_task_id]
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self._submitted_ranking = []
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self._state = ClinicalTrialState(
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@@ -130,8 +133,8 @@ class ClinicalTrialEnvironment(
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elif action.action_type == "flag_deviation":
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self._handle_deviation_flag(action, reward)
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elif action.action_type == "rank_patients":
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self._handle_ranking(action, reward)
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if
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done = True
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terminal_reason = "ranking_submitted"
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elif action.action_type == "submit_decision":
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@@ -175,33 +178,44 @@ class ClinicalTrialEnvironment(
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"""Deterministically compare agent outputs against the current scenario ground truth."""
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if self._current_scenario is None:
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return DEFAULT_GRADER_SCORE
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components: List[float] = []
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truth =
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if truth.extracted_fields:
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field_hits = sum(
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1
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for field_name, expected in truth.extracted_fields.items()
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if _normalize(
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)
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score = field_hits / len(truth.extracted_fields)
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# Clamp component to ensure it never hits exact 0.0 or 1.0
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score = min(max(score, MIN_STRICT_SCORE), MAX_STRICT_SCORE)
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components.append(score)
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if
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exclusion_hits = sum(
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1
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for exclusion in
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if exclusion in
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)
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score = exclusion_hits / len(
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# Clamp component to ensure it never hits exact 0.0 or 1.0
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score = min(max(score, MIN_STRICT_SCORE), MAX_STRICT_SCORE)
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components.append(score)
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if truth.ranking:
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ranking =
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if ranking and len(ranking) == len(truth.ranking):
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positional_hits = sum(
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1 for actual, expected in zip(ranking, truth.ranking) if actual == expected
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@@ -216,14 +230,15 @@ class ClinicalTrialEnvironment(
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pairwise_score = pairwise_hits / max(total_pairs, 1)
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score = (0.6 * positional_hits) + (0.4 * pairwise_score)
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else:
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score =
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# Clamp component to ensure it never hits exact 0.0 or 1.0
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score = min(max(score, MIN_STRICT_SCORE), MAX_STRICT_SCORE)
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components.append(score)
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-
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components.append(score)
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if not components:
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@@ -235,21 +250,34 @@ class ClinicalTrialEnvironment(
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def grade_easy_screening(self) -> float:
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"""Task-specific grader for the easy screening task."""
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self.reset(task_id="easy")
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return self.grader()
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def grade_medium_ranking(self) -> float:
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"""Task-specific grader for the medium ranking task."""
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self.reset(task_id="medium")
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return self.grader()
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def grade_hard_exclusions(self) -> float:
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"""Task-specific grader for the hard exclusions task."""
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-
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-
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-
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def _grade_for_current_task(self) -> float:
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"""Resolve and run the grader declared by the current scenario."""
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@@ -291,6 +319,11 @@ class ClinicalTrialEnvironment(
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def _handle_deviation_flag(self, action: ClinicalTrialAction, reward: ClinicalTrialReward) -> None:
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assert self._current_scenario is not None
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submitted = [_normalize(item) for item in action.deviations]
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if not submitted:
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reward.penalty += HALLUCINATION_PENALTY
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@@ -308,8 +341,13 @@ class ClinicalTrialEnvironment(
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reward.penalty += HALLUCINATION_PENALTY
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reward.notes.append(f"Unsupported deviation claim: {deviation}.")
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def _handle_ranking(self, action: ClinicalTrialAction, reward: ClinicalTrialReward) ->
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assert self._current_scenario is not None
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ranking = action.ranking
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valid_patients = [
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patient["patient_id"]
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@@ -318,9 +356,10 @@ class ClinicalTrialEnvironment(
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if sorted(ranking) != sorted(valid_patients):
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reward.penalty += HALLUCINATION_PENALTY
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reward.notes.append("Ranking must include each patient exactly once.")
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return
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self._submitted_ranking = ranking
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self._state.final_decision = "ranking_submitted"
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def _is_final_submission_correct(self) -> bool:
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assert self._current_scenario is not None
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) -> ClinicalTrialObservation:
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del seed, kwargs
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selected_task_id = task_id or self._next_task_id()
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if selected_task_id not in self._scenarios:
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available = ", ".join(sorted(self._scenarios))
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raise ValueError(f"Unknown task_id '{selected_task_id}'. Expected one of: {available}")
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self._current_scenario = self._scenarios[selected_task_id]
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self._submitted_ranking = []
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self._state = ClinicalTrialState(
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elif action.action_type == "flag_deviation":
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self._handle_deviation_flag(action, reward)
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elif action.action_type == "rank_patients":
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ranking_accepted = self._handle_ranking(action, reward)
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if ranking_accepted:
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done = True
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terminal_reason = "ranking_submitted"
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elif action.action_type == "submit_decision":
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"""Deterministically compare agent outputs against the current scenario ground truth."""
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if self._current_scenario is None:
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return DEFAULT_GRADER_SCORE
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return self._score_scenario(
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self._current_scenario,
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self._state,
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self._submitted_ranking,
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)
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def _score_scenario(
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self,
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scenario: ScenarioSpec,
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state: ClinicalTrialState,
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submitted_ranking: List[str],
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) -> float:
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"""Deterministically compare agent outputs against the provided scenario state."""
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components: List[float] = []
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truth = scenario.ground_truth
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if truth.extracted_fields:
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field_hits = sum(
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1
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for field_name, expected in truth.extracted_fields.items()
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if _normalize(state.extracted_fields.get(field_name)) == _normalize(expected)
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)
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score = field_hits / len(truth.extracted_fields)
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score = min(max(score, MIN_STRICT_SCORE), MAX_STRICT_SCORE)
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components.append(score)
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if scenario.hidden_exclusions:
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exclusion_hits = sum(
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1
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for exclusion in scenario.hidden_exclusions
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if exclusion in state.identified_deviations
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)
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score = exclusion_hits / len(scenario.hidden_exclusions)
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score = min(max(score, MIN_STRICT_SCORE), MAX_STRICT_SCORE)
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components.append(score)
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if truth.ranking:
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ranking = submitted_ranking
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if ranking and len(ranking) == len(truth.ranking):
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positional_hits = sum(
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1 for actual, expected in zip(ranking, truth.ranking) if actual == expected
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pairwise_score = pairwise_hits / max(total_pairs, 1)
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score = (0.6 * positional_hits) + (0.4 * pairwise_score)
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else:
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score = DEFAULT_GRADER_SCORE
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score = min(max(score, MIN_STRICT_SCORE), MAX_STRICT_SCORE)
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components.append(score)
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if state.final_decision is None:
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score = DEFAULT_GRADER_SCORE
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else:
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final_match = _normalize(state.final_decision) == _normalize(truth.final_decision)
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score = MAX_STRICT_SCORE if final_match else MIN_STRICT_SCORE
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components.append(score)
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if not components:
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def grade_easy_screening(self) -> float:
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"""Task-specific grader for the easy screening task."""
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return self._grade_task_by_id("easy")
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def grade_medium_ranking(self) -> float:
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"""Task-specific grader for the medium ranking task."""
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return self._grade_task_by_id("medium")
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def grade_hard_exclusions(self) -> float:
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"""Task-specific grader for the hard exclusions task."""
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return self._grade_task_by_id("hard")
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def _grade_task_by_id(self, task_id: str) -> float:
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"""Return a task grader score without mutating the environment state."""
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scenario = self._scenarios[task_id]
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if self._current_scenario is not None and self._current_scenario.task_id == task_id:
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state = self._state
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ranking = self._submitted_ranking
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else:
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state = ClinicalTrialState(
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current_task_id=scenario.task_id,
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difficulty=scenario.difficulty,
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title=scenario.title,
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extracted_fields={},
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identified_deviations=[],
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final_decision=None,
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grading_score=DEFAULT_GRADER_SCORE,
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)
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ranking = []
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return self._score_scenario(scenario, state, ranking)
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def _grade_for_current_task(self) -> float:
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"""Resolve and run the grader declared by the current scenario."""
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def _handle_deviation_flag(self, action: ClinicalTrialAction, reward: ClinicalTrialReward) -> None:
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assert self._current_scenario is not None
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if self._current_scenario.task_id != "hard":
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reward.penalty += HALLUCINATION_PENALTY
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reward.notes.append("Deviation flagging is only valid for the hard task.")
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return
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submitted = [_normalize(item) for item in action.deviations]
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if not submitted:
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reward.penalty += HALLUCINATION_PENALTY
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reward.penalty += HALLUCINATION_PENALTY
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reward.notes.append(f"Unsupported deviation claim: {deviation}.")
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def _handle_ranking(self, action: ClinicalTrialAction, reward: ClinicalTrialReward) -> bool:
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assert self._current_scenario is not None
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if self._current_scenario.task_id != "medium":
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reward.penalty += HALLUCINATION_PENALTY
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reward.notes.append("Ranking is only valid for the medium task.")
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return False
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ranking = action.ranking
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valid_patients = [
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patient["patient_id"]
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if sorted(ranking) != sorted(valid_patients):
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reward.penalty += HALLUCINATION_PENALTY
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reward.notes.append("Ranking must include each patient exactly once.")
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return False
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self._submitted_ranking = ranking
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self._state.final_decision = "ranking_submitted"
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return True
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def _is_final_submission_correct(self) -> bool:
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assert self._current_scenario is not None
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