Spaces:
Sleeping
Sleeping
Manik Sheokand
commited on
Commit
·
421600f
1
Parent(s):
bdbb866
Fix: Replace Qwen2VLForConditionalGeneration with AutoModelForCausalLM and update transformers to 4.44.0
Browse files- app.py +233 -196
- requirements.txt +3 -3
- runtime.txt +1 -0
app.py
CHANGED
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@@ -1,220 +1,257 @@
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# app.py
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# Dermatology-AI-Assistant — Hugging Face Space (ZeroGPU-ready)
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# - First tries your fine-tuned model
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# - If Qwen raises token/feature mismatch, falls back to official base model
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# - Acquires ZeroGPU only during inference
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# - Uses qwen-vl-utils.process_vision_info
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import os
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import logging
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from typing import Optional
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import gradio as gr
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import spaces
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import torch
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from PIL import Image
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logging.basicConfig(level=logging.INFO, format="%(levelname)s:%(name)s:%(message)s")
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logger = logging.getLogger(__name__)
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# ---------------------------
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# Config
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# ---------------------------
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FT_MODEL_ID = os.environ.get("MODEL_ID", "ColdSlim/Dermatology-Qwen2.5-VL-3B")
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BASE_MODEL_ID = os.environ.get("FALLBACK_BASE_MODEL_ID", "Qwen/Qwen2.5-VL-3B-Instruct")
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GEN_KW = dict(
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max_new_tokens=512,
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do_sample=True,
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temperature=0.7,
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top_p=0.9,
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)
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ZGPU_DURATION = int(os.environ.get("ZGPU_DURATION", "180"))
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# Preload only the fine-tuned processor on CPU; we may swap to base processor in the fallback
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logger.info(f"Loading processor from: {FT_MODEL_ID}")
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ft_processor = AutoProcessor.from_pretrained(FT_MODEL_ID, trust_remote_code=True)
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logger.info("Processor loaded.")
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# Optional: stabilize tiling by constraining pixel range (helps placeholder consistency)
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def _tune_image_processor(proc):
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if hasattr(proc, "image_processor"):
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try:
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proc.image_processor.max_pixels = int(os.environ.get("QWEN_MAX_PIXELS", "1500000")) # ~1.5MP
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proc.image_processor.min_pixels = int(os.environ.get("QWEN_MIN_PIXELS", "262144")) # 512x512
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except Exception:
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pass
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_tune_image_processor(ft_processor)
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# ---------------------------
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# Helpers
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# ---------------------------
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def _messages(image: Image.Image, question: str):
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# ensure RGB to avoid mode surprises
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if image.mode != "RGB":
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image = image.convert("RGB")
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return [
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{
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"role": "user",
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"content": [
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{"type": "image", "image": image},
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{"type": "text", "text": question},
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],
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}
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]
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def build_inputs(processor: AutoProcessor, image: Image.Image, question: str):
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"""
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Build Qwen-style multimodal inputs (no padding, batch size 1).
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"""
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messages = _messages(image, question)
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text = processor.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)
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image_inputs, video_inputs = process_vision_info(messages)
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inputs = processor(
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text=[text],
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images=image_inputs,
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videos=video_inputs,
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return_tensors="pt", # no padding for single sample
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)
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return inputs
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"\n\n---\n"
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"_Disclaimer: This AI is not a medical device. The output is informational and may be inaccurate. "
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"Consult a qualified dermatologist for diagnosis and treatment._"
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)
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return ans + tail
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with torch.no_grad():
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out_ids = model.generate(
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**inputs,
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**GEN_KW,
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pad_token_id=_pad_token_id(processor, model),
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)
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trimmed = [o[len(i):] for i, o in zip(inputs["input_ids"], out_ids)]
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text = processor.batch_decode(trimmed, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
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return text
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#
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@spaces.GPU(duration=ZGPU_DURATION)
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def analyze_skin_condition(image: Optional[Image.Image], question: str) -> str:
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"""
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Try fine-tuned model first; on token/feature mismatch, fall back to base model+processor.
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"""
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if image is None:
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return "❌ Please upload an image first."
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try:
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#
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trust_remote_code=True,
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low_cpu_mem_usage=True,
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ignore_mismatched_sizes=True
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)
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return format_derm_disclaimer(text)
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except ValueError as ve:
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msg = str(ve)
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if "Image features and image tokens do not match" in msg:
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logger.warning("Token/feature mismatch on fine-tuned model — falling back to base model.")
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else:
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raise
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# ------- Attempt 2: Base model & its processor -------
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# Free FT model first
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del model
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torch.cuda.empty_cache()
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logger.info(f"Loading BASE model on GPU: {BASE_MODEL_ID}")
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base_processor = AutoProcessor.from_pretrained(BASE_MODEL_ID, trust_remote_code=True)
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_tune_image_processor(base_processor)
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model = Qwen2VLForConditionalGeneration.from_pretrained(
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BASE_MODEL_ID,
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torch_dtype=torch.float16,
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device_map="cuda",
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trust_remote_code=True,
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low_cpu_mem_usage=True,
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)
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logger.info("Base model loaded.")
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base_inputs = build_inputs(base_processor, image, question)
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text = _generate_text(model, base_processor, base_inputs)
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return format_derm_disclaimer(text)
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except Exception as e:
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logger.
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return
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finally:
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if model is not None:
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del model
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torch.cuda.empty_cache()
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)
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with gr.Row():
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return demo
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def main():
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if __name__ == "__main__":
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main()
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import spaces
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import gradio as gr
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import torch
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from transformers import AutoProcessor, AutoModelForCausalLM
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from PIL import Image
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import logging
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import subprocess
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import sys
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# Force Gradio update if needed
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def ensure_gradio_version():
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try:
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import pkg_resources
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current_version = pkg_resources.get_distribution("gradio").version
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if current_version.startswith("4.0"):
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logger.warning(f"Detected old Gradio version {current_version}, attempting to upgrade...")
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subprocess.check_call([sys.executable, "-m", "pip", "install", "--upgrade", "gradio==4.44.1"])
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logger.info("Gradio upgrade completed")
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except Exception as e:
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logger.warning(f"Could not check/upgrade Gradio: {e}")
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# Check and upgrade Gradio if needed
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ensure_gradio_version()
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# Configure logging
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logging.basicConfig(level=logging.INFO)
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logger = logging.getLogger(__name__)
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# Global variables for model and processor
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model = None
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processor = None
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def load_model():
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"""Load the fine-tuned dermatology model"""
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global model, processor
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try:
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# Load the merged model (replace with your actual model path)
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model_name = "ColdSlim/Dermatology-Qwen2.5-VL-3B" # Update with your actual model name
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logger.info(f"Loading model: {model_name}")
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processor = AutoProcessor.from_pretrained(model_name, trust_remote_code=True)
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model = AutoModelForCausalLM.from_pretrained(
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model_name,
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dtype=torch.bfloat16,
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device_map="auto",
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trust_remote_code=True,
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low_cpu_mem_usage=True,
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ignore_mismatched_sizes=True
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)
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logger.info("Model loaded successfully!")
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return True
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except Exception as e:
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logger.error(f"Error loading model: {e}")
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return False
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def analyze_skin_condition(image, question="Describe this skin condition in detail."):
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"""Analyze skin condition from uploaded image"""
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global model, processor
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if model is None or processor is None:
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return "❌ Model not loaded. Please wait for the model to load or contact the administrator."
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if image is None:
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return "❌ Please upload an image first."
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try:
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# Prepare the conversation
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messages = [
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{
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"role": "user",
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"content": [
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{"type": "image", "image": image},
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| 76 |
+
{"type": "text", "text": question}
|
| 77 |
+
]
|
| 78 |
+
}
|
| 79 |
+
]
|
| 80 |
+
|
| 81 |
+
# Process the input
|
| 82 |
+
text = processor.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)
|
| 83 |
+
image_inputs, video_inputs = processor.process_vision_info(messages)
|
| 84 |
+
|
| 85 |
+
inputs = processor(
|
| 86 |
+
text=[text],
|
| 87 |
+
images=image_inputs,
|
| 88 |
+
videos=video_inputs,
|
| 89 |
+
padding=True,
|
| 90 |
+
return_tensors="pt"
|
| 91 |
)
|
| 92 |
+
|
| 93 |
+
# Move inputs to the same device as model
|
| 94 |
+
inputs = {k: v.to(model.device) if isinstance(v, torch.Tensor) else v for k, v in inputs.items()}
|
| 95 |
+
|
| 96 |
+
# Generate response
|
| 97 |
+
with torch.no_grad():
|
| 98 |
+
generated_ids = model.generate(
|
| 99 |
+
**inputs,
|
| 100 |
+
max_new_tokens=512,
|
| 101 |
+
do_sample=True,
|
| 102 |
+
temperature=0.7,
|
| 103 |
+
top_p=0.9,
|
| 104 |
+
pad_token_id=processor.tokenizer.eos_token_id
|
| 105 |
)
|
| 106 |
+
|
| 107 |
+
# Decode the response
|
| 108 |
+
generated_ids_trimmed = [
|
| 109 |
+
out_ids[len(in_ids):] for in_ids, out_ids in zip(inputs.input_ids, generated_ids)
|
| 110 |
+
]
|
| 111 |
+
output_text = processor.batch_decode(
|
| 112 |
+
generated_ids_trimmed, skip_special_tokens=True, clean_up_tokenization_spaces=False
|
| 113 |
+
)[0]
|
| 114 |
+
|
| 115 |
+
return output_text
|
| 116 |
+
|
| 117 |
+
except Exception as e:
|
| 118 |
+
logger.error(f"Error during inference: {e}")
|
| 119 |
+
return f"❌ Error analyzing image: {str(e)}"
|
| 120 |
|
| 121 |
+
def create_interface():
|
| 122 |
+
"""Create the Gradio interface"""
|
| 123 |
+
|
| 124 |
+
# Load model on startup
|
| 125 |
+
model_loaded = load_model()
|
| 126 |
+
|
| 127 |
+
with gr.Blocks(
|
| 128 |
+
title="Dermatology AI Assistant",
|
| 129 |
+
theme=gr.themes.Soft(),
|
| 130 |
+
css="""
|
| 131 |
+
.gradio-container {
|
| 132 |
+
max-width: 1200px !important;
|
| 133 |
+
margin: auto !important;
|
| 134 |
+
}
|
| 135 |
+
.main-header {
|
| 136 |
+
text-align: center;
|
| 137 |
+
margin-bottom: 2rem;
|
| 138 |
+
}
|
| 139 |
+
.warning-box {
|
| 140 |
+
background-color: #fff3cd;
|
| 141 |
+
border: 1px solid #ffeaa7;
|
| 142 |
+
border-radius: 8px;
|
| 143 |
+
padding: 1rem;
|
| 144 |
+
margin: 1rem 0;
|
| 145 |
+
}
|
| 146 |
+
"""
|
| 147 |
+
) as demo:
|
| 148 |
+
|
| 149 |
+
gr.HTML("""
|
| 150 |
+
<div class="main-header">
|
| 151 |
+
<h1>🩺 Dermatology AI Assistant</h1>
|
| 152 |
+
<p>Powered by Qwen2.5-VL-3B fine-tuned for dermatology analysis</p>
|
| 153 |
+
</div>
|
| 154 |
+
""")
|
| 155 |
+
|
| 156 |
+
# Warning message
|
| 157 |
+
gr.HTML("""
|
| 158 |
+
<div class="warning-box">
|
| 159 |
+
<h3>⚠️ Medical Disclaimer</h3>
|
| 160 |
+
<p>This AI assistant is for educational and research purposes only.
|
| 161 |
+
It should not be used as a substitute for professional medical advice,
|
| 162 |
+
diagnosis, or treatment. Always consult with a qualified healthcare
|
| 163 |
+
provider for medical concerns.</p>
|
| 164 |
+
</div>
|
| 165 |
+
""")
|
| 166 |
+
|
| 167 |
with gr.Row():
|
| 168 |
+
with gr.Column(scale=1):
|
| 169 |
+
# Image upload
|
| 170 |
+
image_input = gr.Image(
|
| 171 |
+
label="Upload Skin Image",
|
| 172 |
+
type="pil",
|
| 173 |
+
height=400
|
| 174 |
+
)
|
| 175 |
+
|
| 176 |
+
# Question input
|
| 177 |
+
question_input = gr.Textbox(
|
| 178 |
+
label="Question (Optional)",
|
| 179 |
+
placeholder="Describe this skin condition in detail.",
|
| 180 |
+
value="Describe this skin condition in detail.",
|
| 181 |
+
lines=3
|
| 182 |
+
)
|
| 183 |
+
|
| 184 |
+
# Analyze button
|
| 185 |
+
analyze_btn = gr.Button(
|
| 186 |
+
"🔍 Analyze Skin Condition",
|
| 187 |
+
variant="primary",
|
| 188 |
+
size="lg"
|
| 189 |
+
)
|
| 190 |
+
|
| 191 |
+
# Example questions
|
| 192 |
+
gr.HTML("""
|
| 193 |
+
<h4>💡 Example Questions:</h4>
|
| 194 |
+
<ul>
|
| 195 |
+
<li>What type of skin condition is this?</li>
|
| 196 |
+
<li>Describe the characteristics of this lesion.</li>
|
| 197 |
+
<li>What are the potential causes of this skin issue?</li>
|
| 198 |
+
<li>What should I know about this skin condition?</li>
|
| 199 |
+
</ul>
|
| 200 |
+
""")
|
| 201 |
+
|
| 202 |
+
with gr.Column(scale=1):
|
| 203 |
+
# Output
|
| 204 |
+
output_text = gr.Textbox(
|
| 205 |
+
label="AI Analysis",
|
| 206 |
+
lines=15,
|
| 207 |
+
max_lines=20,
|
| 208 |
+
show_copy_button=True
|
| 209 |
+
)
|
| 210 |
+
|
| 211 |
+
# Examples
|
| 212 |
+
gr.Examples(
|
| 213 |
+
examples=[
|
| 214 |
+
["What type of skin condition is this?", "Describe this skin condition in detail."],
|
| 215 |
+
["What are the characteristics of this lesion?", "Describe this skin condition in detail."],
|
| 216 |
+
["What should I know about this skin issue?", "Describe this skin condition in detail."],
|
| 217 |
+
],
|
| 218 |
+
inputs=[question_input, question_input],
|
| 219 |
+
label="💡 Example Questions"
|
| 220 |
+
)
|
| 221 |
+
|
| 222 |
+
# Event handlers
|
| 223 |
+
analyze_btn.click(
|
| 224 |
+
fn=analyze_skin_condition,
|
| 225 |
+
inputs=[image_input, question_input],
|
| 226 |
+
outputs=output_text
|
| 227 |
+
)
|
| 228 |
+
|
| 229 |
+
# Model status
|
| 230 |
+
if model_loaded:
|
| 231 |
+
gr.HTML("<div style='text-align: center; color: green;'>✅ Model loaded successfully!</div>")
|
| 232 |
+
else:
|
| 233 |
+
gr.HTML("<div style='text-align: center; color: red;'>❌ Model loading failed. Please check the logs.</div>")
|
| 234 |
+
|
| 235 |
return demo
|
| 236 |
|
| 237 |
+
@spaces.GPU
|
| 238 |
def main():
|
| 239 |
+
"""Main function with GPU decorator for Hugging Face Spaces"""
|
| 240 |
+
try:
|
| 241 |
+
# Create and launch the interface
|
| 242 |
+
demo = create_interface()
|
| 243 |
+
demo.launch(
|
| 244 |
+
server_name="0.0.0.0",
|
| 245 |
+
server_port=7860,
|
| 246 |
+
share=False,
|
| 247 |
+
show_error=True,
|
| 248 |
+
inbrowser=False,
|
| 249 |
+
quiet=False
|
| 250 |
+
)
|
| 251 |
+
except Exception as e:
|
| 252 |
+
logger.error(f"Error launching app: {e}")
|
| 253 |
+
raise
|
| 254 |
|
| 255 |
if __name__ == "__main__":
|
| 256 |
main()
|
| 257 |
+
|
requirements.txt
CHANGED
|
@@ -3,8 +3,8 @@
|
|
| 3 |
# Core dependencies
|
| 4 |
torch>=2.0.0
|
| 5 |
torchvision>=0.15.0
|
| 6 |
-
transformers
|
| 7 |
-
accelerate>=0.
|
| 8 |
gradio==4.44.1
|
| 9 |
huggingface_hub>=0.20.0
|
| 10 |
spaces
|
|
@@ -14,7 +14,7 @@ Pillow>=9.0.0
|
|
| 14 |
opencv-python>=4.5.0
|
| 15 |
|
| 16 |
# Qwen2-VL specific
|
| 17 |
-
qwen-vl-utils>=0.0.
|
| 18 |
|
| 19 |
# Optional: For better performance
|
| 20 |
flash-attn>=2.0.0
|
|
|
|
| 3 |
# Core dependencies
|
| 4 |
torch>=2.0.0
|
| 5 |
torchvision>=0.15.0
|
| 6 |
+
transformers>=4.44.0
|
| 7 |
+
accelerate>=0.20.0
|
| 8 |
gradio==4.44.1
|
| 9 |
huggingface_hub>=0.20.0
|
| 10 |
spaces
|
|
|
|
| 14 |
opencv-python>=4.5.0
|
| 15 |
|
| 16 |
# Qwen2-VL specific
|
| 17 |
+
qwen-vl-utils>=0.0.1
|
| 18 |
|
| 19 |
# Optional: For better performance
|
| 20 |
flash-attn>=2.0.0
|
runtime.txt
CHANGED
|
@@ -1 +1,2 @@
|
|
| 1 |
python-3.10
|
|
|
|
|
|
| 1 |
python-3.10
|
| 2 |
+
|