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Build error
Build error
Manik Sheokand commited on
Commit ·
cbc528c
1
Parent(s): d5cfeb4
new changes
Browse files- .env +4 -0
- app.py +3 -3
- app.py.backup +324 -0
.env
ADDED
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@@ -0,0 +1,4 @@
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# Optimized settings for free tier
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ZGPU_DURATION=120
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QWEN_MAX_PIXELS=250880
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QWEN_MIN_PIXELS=200704
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app.py
CHANGED
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@@ -38,11 +38,11 @@ BASE_MODEL_ID = os.environ.get("BASE_MODEL_ID", "Qwen/Qwen2.5-VL-3B-Instruct")
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ADAPTER_ID = os.environ.get("ADAPTER_ID", "ColdSlim/Dermatology-Qwen2.5-VL-3B-LoRA")
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# Give ourselves more time for first load in cold starts
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-
ZGPU_DURATION = int(os.environ.get("ZGPU_DURATION", "
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# Deterministic decoding for eval; tweak as needed
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GEN_KW = dict(
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max_new_tokens=
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do_sample=False,
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temperature=0.0,
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top_p=1.0,
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@@ -77,7 +77,7 @@ def _load_multimodal_processor() -> AutoProcessor:
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)
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# optional: stabilize pixel hints
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try:
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proc.image_processor.max_pixels = int(os.environ.get("QWEN_MAX_PIXELS", str(
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proc.image_processor.min_pixels = int(os.environ.get("QWEN_MIN_PIXELS", str(256 * 28 * 28)))
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except Exception:
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pass
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ADAPTER_ID = os.environ.get("ADAPTER_ID", "ColdSlim/Dermatology-Qwen2.5-VL-3B-LoRA")
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# Give ourselves more time for first load in cold starts
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ZGPU_DURATION = int(os.environ.get("ZGPU_DURATION", "60")) # seconds
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# Deterministic decoding for eval; tweak as needed
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GEN_KW = dict(
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max_new_tokens=64,
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do_sample=False,
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temperature=0.0,
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top_p=1.0,
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)
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# optional: stabilize pixel hints
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try:
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proc.image_processor.max_pixels = int(os.environ.get("QWEN_MAX_PIXELS", str(256 * 28 * 28))) # ~0.2MP
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proc.image_processor.min_pixels = int(os.environ.get("QWEN_MIN_PIXELS", str(256 * 28 * 28)))
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except Exception:
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pass
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app.py.backup
ADDED
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@@ -0,0 +1,324 @@
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# app.py
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# Dermatology-AI-Assistant — HF Spaces (ZeroGPU, Qwen2.5-VL + LoRA adapters)
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| 3 |
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# - Normal UI for single-image analysis
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| 4 |
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# - Hidden API endpoint /analyze_batch for batched evaluation
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| 5 |
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# - Caches & sanitizes LoRA repo once at startup (CPU); attaches on GPU per request
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| 6 |
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# - No CUDA at import-time; ZeroGPU only inside @spaces.GPU functions
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import os
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import json
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import tempfile
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import shutil
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import logging
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from typing import Optional, List, Dict, Any
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import gradio as gr
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import spaces
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import torch
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from PIL import Image
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from huggingface_hub import snapshot_download
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from peft import PeftModel
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from transformers import AutoProcessor
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# Prefer the new class name if your transformers is recent; fall back to old alias.
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| 24 |
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try:
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from transformers import AutoModelForImageTextToText as VisionTextModelClass
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| 26 |
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except Exception:
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| 27 |
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from transformers import AutoModelForVision2Seq as VisionTextModelClass # deprecated alias
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| 28 |
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from qwen_vl_utils import process_vision_info
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| 30 |
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logging.basicConfig(level=logging.INFO, format="%(levelname)s:%(name)s:%(message)s")
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| 32 |
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logger = logging.getLogger(__name__)
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| 33 |
+
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| 34 |
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# ---------------------------
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# Config
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| 36 |
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# ---------------------------
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| 37 |
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BASE_MODEL_ID = os.environ.get("BASE_MODEL_ID", "Qwen/Qwen2.5-VL-3B-Instruct")
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| 38 |
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ADAPTER_ID = os.environ.get("ADAPTER_ID", "ColdSlim/Dermatology-Qwen2.5-VL-3B-LoRA")
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| 39 |
+
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| 40 |
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# Give ourselves more time for first load in cold starts
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| 41 |
+
ZGPU_DURATION = int(os.environ.get("ZGPU_DURATION", "600")) # seconds
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| 42 |
+
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| 43 |
+
# Deterministic decoding for eval; tweak as needed
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| 44 |
+
GEN_KW = dict(
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| 45 |
+
max_new_tokens=256,
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| 46 |
+
do_sample=False,
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| 47 |
+
temperature=0.0,
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+
top_p=1.0,
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| 49 |
+
repetition_penalty=1.02,
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)
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+
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SYSTEM_PROMPT = (
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"You are a dermatology assistant. First, look carefully at the IMAGE.\n"
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"If the image is NOT a close-up of human skin or a dermatologic lesion, "
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"respond EXACTLY with: 'The image does not appear to show a skin condition; I cannot analyze it.' "
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"Do not invent findings.\n"
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"If it IS a skin/lesion photo, provide a concise description, likely differentials (3–5), "
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"and prudent next steps. Avoid definitive diagnoses and include red flags briefly."
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)
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# ---------------------------
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# Processor (CPU only; safe at import time)
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# ---------------------------
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def _load_multimodal_processor() -> AutoProcessor:
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logger.info(f"Loading multimodal processor from base: {BASE_MODEL_ID}")
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proc = AutoProcessor.from_pretrained(
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BASE_MODEL_ID,
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trust_remote_code=True,
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use_fast=False, # ensure multimodal __call__(images=...) works
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)
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# sanity check
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sig = getattr(proc.__call__, "__signature__", None)
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accepts_images = ("images" in str(sig)) if sig else hasattr(proc, "image_processor")
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if not accepts_images or not hasattr(proc, "image_processor"):
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raise RuntimeError(
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"Loaded processor is not multimodal. Ensure transformers>=4.44.2, qwen-vl-utils>=0.0.8, torch>=2.2."
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)
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# optional: stabilize pixel hints
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try:
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proc.image_processor.max_pixels = int(os.environ.get("QWEN_MAX_PIXELS", str(640 * 28 * 28))) # ~0.5MP
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proc.image_processor.min_pixels = int(os.environ.get("QWEN_MIN_PIXELS", str(256 * 28 * 28)))
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except Exception:
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pass
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| 84 |
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logger.info(f"Processor ready: {proc.__class__.__name__}")
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return proc
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+
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processor = _load_multimodal_processor()
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# ---------------------------
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# LoRA adapter cache & sanitize (CPU-only, startup)
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# ---------------------------
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| 92 |
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def _sanitize_adapter_repo(src_dir: str) -> str:
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| 93 |
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"""Remove unknown keys from adapter_config.json so PEFT can parse."""
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| 94 |
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cfg_path = os.path.join(src_dir, "adapter_config.json")
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if not os.path.isfile(cfg_path):
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return src_dir
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+
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| 98 |
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with open(cfg_path, "r") as f:
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cfg = json.load(f)
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| 101 |
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allowed = {
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"peft_type", "task_type",
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| 103 |
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"r", "lora_alpha", "lora_dropout",
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| 104 |
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"target_modules", "bias",
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"inference_mode",
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| 106 |
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"base_model_name_or_path",
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| 107 |
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"fan_in_fan_out",
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| 108 |
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"modules_to_save",
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| 109 |
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"layers_to_transform",
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| 110 |
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"layers_pattern",
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| 111 |
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"use_rslora",
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| 112 |
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"rank_dropout", "module_dropout",
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| 113 |
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"init_lora_weights",
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| 114 |
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"use_dora",
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| 115 |
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}
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| 116 |
+
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| 117 |
+
# If DoRA isn't actually used, remove its block
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| 118 |
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if str(cfg.get("use_dora", "false")).lower() in ("false", "0", "no"):
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| 119 |
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cfg.pop("dora_config", None)
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| 120 |
+
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| 121 |
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# Drop unknown top-level keys (e.g., 'corda_config', 'eva_config', etc.)
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| 122 |
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for k in list(cfg.keys()):
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| 123 |
+
if k not in allowed:
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| 124 |
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cfg.pop(k, None)
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| 125 |
+
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| 126 |
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cfg.setdefault("peft_type", "LORA")
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| 127 |
+
cfg.setdefault("task_type", "CAUSAL_LM")
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| 128 |
+
cfg.setdefault("bias", "none")
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| 129 |
+
cfg.setdefault("inference_mode", True)
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| 130 |
+
|
| 131 |
+
# Normalize booleans if strings
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| 132 |
+
for k in ("inference_mode", "use_rslora", "use_dora", "fan_in_fan_out"):
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| 133 |
+
if k in cfg and isinstance(cfg[k], str):
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| 134 |
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cfg[k] = cfg[k].lower() in ("true", "1", "yes")
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| 135 |
+
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| 136 |
+
with open(cfg_path, "w") as f:
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| 137 |
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json.dump(cfg, f, indent=2)
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| 138 |
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return src_dir
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| 139 |
+
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| 140 |
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logger.info(f"Downloading/caching LoRA adapters: {ADAPTER_ID}")
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| 141 |
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_ADAPTER_LOCAL = snapshot_download(ADAPTER_ID, local_dir=None, local_dir_use_symlinks=False)
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| 142 |
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_ADAPTER_LOCAL = _sanitize_adapter_repo(_ADAPTER_LOCAL)
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| 143 |
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logger.info(f"Adapters ready at: {_ADAPTER_LOCAL}")
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| 144 |
+
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| 145 |
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# ---------------------------
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| 146 |
+
# Helpers
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| 147 |
+
# ---------------------------
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| 148 |
+
def _messages(image: Image.Image, question: str):
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| 149 |
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if image.mode != "RGB":
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| 150 |
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image = image.convert("RGB")
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| 151 |
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return [
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| 152 |
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{"role": "system", "content": [{"type": "text", "text": SYSTEM_PROMPT}]},
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| 153 |
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{"role": "user", "content": [{"type": "image", "image": image},
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| 154 |
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{"type": "text", "text": question}]},
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| 155 |
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]
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| 156 |
+
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| 157 |
+
def build_inputs(image: Image.Image, question: str):
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| 158 |
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msgs = _messages(image, question)
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| 159 |
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text = processor.apply_chat_template(msgs, tokenize=False, add_generation_prompt=True)
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| 160 |
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image_inputs, video_inputs = process_vision_info(msgs)
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| 161 |
+
return processor(text=[text], images=image_inputs, videos=video_inputs, return_tensors="pt")
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| 162 |
+
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| 163 |
+
def _pad_token_id(model):
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| 164 |
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tid = getattr(getattr(processor, "tokenizer", None), "eos_token_id", None)
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| 165 |
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return tid if tid is not None else (getattr(getattr(model, "config", None), "eos_token_id", 0) or 0)
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| 166 |
+
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| 167 |
+
def _generate_text(model, inputs: Dict[str, Any]) -> str:
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| 168 |
+
# move tensors to model device
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| 169 |
+
device = next(model.parameters()).device
|
| 170 |
+
inputs = {k: v.to(device) if isinstance(v, torch.Tensor) else v for k, v in inputs.items()}
|
| 171 |
+
with torch.no_grad():
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| 172 |
+
out_ids = model.generate(**inputs, **GEN_KW, pad_token_id=_pad_token_id(model))
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| 173 |
+
# trim prompt
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| 174 |
+
trimmed = [o[len(i):] for i, o in zip(inputs["input_ids"], out_ids)]
|
| 175 |
+
text = processor.batch_decode(trimmed, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
|
| 176 |
+
return text
|
| 177 |
+
|
| 178 |
+
def format_derm_disclaimer(ans: str) -> str:
|
| 179 |
+
return (
|
| 180 |
+
ans
|
| 181 |
+
+ "\n\n---\n"
|
| 182 |
+
"_Disclaimer: This AI is not a medical device. The output is informational and may be inaccurate. "
|
| 183 |
+
"Consult a qualified dermatologist for diagnosis and treatment._"
|
| 184 |
+
)
|
| 185 |
+
|
| 186 |
+
def _load_base_plus_lora(dtype: torch.dtype = torch.float16):
|
| 187 |
+
logger.info(f"Loading BASE on GPU: {BASE_MODEL_ID}")
|
| 188 |
+
base = VisionTextModelClass.from_pretrained(
|
| 189 |
+
BASE_MODEL_ID,
|
| 190 |
+
torch_dtype=dtype,
|
| 191 |
+
device_map="cuda",
|
| 192 |
+
trust_remote_code=True,
|
| 193 |
+
low_cpu_mem_usage=True,
|
| 194 |
+
)
|
| 195 |
+
logger.info(f"Attaching LoRA adapters from: {_ADAPTER_LOCAL}")
|
| 196 |
+
model = PeftModel.from_pretrained(base, _ADAPTER_LOCAL, is_trainable=False)
|
| 197 |
+
model.eval()
|
| 198 |
+
return model
|
| 199 |
+
|
| 200 |
+
# ---------------------------
|
| 201 |
+
# Inference (ZeroGPU-safe: only here we touch CUDA)
|
| 202 |
+
# ---------------------------
|
| 203 |
+
@spaces.GPU(duration=ZGPU_DURATION)
|
| 204 |
+
def analyze_skin_condition(image: Optional[Image.Image], question: str) -> str:
|
| 205 |
+
if image is None:
|
| 206 |
+
return "❌ Please upload an image first."
|
| 207 |
+
model = None
|
| 208 |
+
try:
|
| 209 |
+
inputs = build_inputs(image, question)
|
| 210 |
+
# pick fp16; bf16 also works on newer GPUs
|
| 211 |
+
model = _load_base_plus_lora(dtype=torch.float16)
|
| 212 |
+
text = _generate_text(model, inputs)
|
| 213 |
+
return format_derm_disclaimer(text)
|
| 214 |
+
except Exception as e:
|
| 215 |
+
logger.exception("Error during inference")
|
| 216 |
+
return f"❌ Error analyzing image: {e}"
|
| 217 |
+
finally:
|
| 218 |
+
if model is not None:
|
| 219 |
+
del model
|
| 220 |
+
torch.cuda.empty_cache()
|
| 221 |
+
|
| 222 |
+
# ---------------------------
|
| 223 |
+
# Batched inference API (hidden; call via /analyze_batch)
|
| 224 |
+
# ---------------------------
|
| 225 |
+
@spaces.GPU(duration=ZGPU_DURATION)
|
| 226 |
+
def analyze_batch(samples: List[Dict[str, Any]]) -> List[str]:
|
| 227 |
+
"""
|
| 228 |
+
samples: list of dicts like: {"image": <PIL/Image or filepath>, "question": <str>}
|
| 229 |
+
Returns a list of responses (same order).
|
| 230 |
+
"""
|
| 231 |
+
outs: List[str] = []
|
| 232 |
+
if not isinstance(samples, list):
|
| 233 |
+
return ["❌ Invalid payload: expected a JSON list of {image, question} dicts."]
|
| 234 |
+
model = None
|
| 235 |
+
try:
|
| 236 |
+
model = _load_base_plus_lora(dtype=torch.float16)
|
| 237 |
+
for ex in samples:
|
| 238 |
+
try:
|
| 239 |
+
img = ex.get("image")
|
| 240 |
+
q = ex.get("question") or "Describe this skin condition in detail and suggest possible next steps."
|
| 241 |
+
# If the client sent a path (e.g., via gradio_client handle_file), load it:
|
| 242 |
+
if isinstance(img, str) and os.path.isfile(img):
|
| 243 |
+
img = Image.open(img).convert("RGB")
|
| 244 |
+
if not isinstance(img, Image.Image):
|
| 245 |
+
outs.append("❌ Missing/invalid image")
|
| 246 |
+
continue
|
| 247 |
+
inputs = build_inputs(img, q)
|
| 248 |
+
text = _generate_text(model, inputs)
|
| 249 |
+
outs.append(format_derm_disclaimer(text))
|
| 250 |
+
except Exception as ie:
|
| 251 |
+
logger.exception("Error on one batch item")
|
| 252 |
+
outs.append(f"❌ Error analyzing one item: {ie}")
|
| 253 |
+
return outs
|
| 254 |
+
except Exception as e:
|
| 255 |
+
logger.exception("Batch inference failed")
|
| 256 |
+
return [f"❌ Batch error: {e}"]
|
| 257 |
+
finally:
|
| 258 |
+
if model is not None:
|
| 259 |
+
del model
|
| 260 |
+
torch.cuda.empty_cache()
|
| 261 |
+
|
| 262 |
+
# ---------------------------
|
| 263 |
+
# UI
|
| 264 |
+
# ---------------------------
|
| 265 |
+
def create_interface() -> gr.Blocks:
|
| 266 |
+
with gr.Blocks(title="Dermatology AI Assistant") as demo:
|
| 267 |
+
gr.Markdown(
|
| 268 |
+
"# 🩺 Dermatology AI Assistant\n"
|
| 269 |
+
"Upload a skin photo and ask a question. The model will provide an informational response."
|
| 270 |
+
)
|
| 271 |
+
|
| 272 |
+
with gr.Row():
|
| 273 |
+
image_input = gr.Image(type="pil", label="Upload Image (JPG/PNG)")
|
| 274 |
+
question_input = gr.Textbox(
|
| 275 |
+
label="Question / Prompt",
|
| 276 |
+
value="Describe this skin condition in detail and suggest possible next steps.",
|
| 277 |
+
lines=3,
|
| 278 |
+
)
|
| 279 |
+
|
| 280 |
+
with gr.Row():
|
| 281 |
+
submit_btn = gr.Button("Analyze", variant="primary")
|
| 282 |
+
clear_btn = gr.Button("Clear")
|
| 283 |
+
|
| 284 |
+
output_box = gr.Textbox(label="Response", lines=16, show_copy_button=True)
|
| 285 |
+
|
| 286 |
+
submit_btn.click(
|
| 287 |
+
fn=analyze_skin_condition,
|
| 288 |
+
inputs=[image_input, question_input],
|
| 289 |
+
outputs=output_box,
|
| 290 |
+
queue=True,
|
| 291 |
+
api_name="analyze_skin_condition", # public API for single requests
|
| 292 |
+
)
|
| 293 |
+
clear_btn.click(fn=lambda: (None, ""), inputs=None, outputs=[image_input, question_input])
|
| 294 |
+
|
| 295 |
+
# Hidden minimal iface just to expose a batch API route
|
| 296 |
+
gr.Interface(
|
| 297 |
+
fn=analyze_batch,
|
| 298 |
+
inputs=[gr.JSON(label="samples")],
|
| 299 |
+
outputs=gr.JSON(label="responses"),
|
| 300 |
+
allow_flagging="never",
|
| 301 |
+
api_name="analyze_batch", # call this from gradio_client
|
| 302 |
+
visible=False, # hide in UI; keep route alive
|
| 303 |
+
)
|
| 304 |
+
|
| 305 |
+
demo.queue()
|
| 306 |
+
gr.Markdown(
|
| 307 |
+
"_Tips: Ensure good lighting and focus. Avoid uploading personally identifying information._"
|
| 308 |
+
)
|
| 309 |
+
return demo
|
| 310 |
+
|
| 311 |
+
def main():
|
| 312 |
+
demo = create_interface()
|
| 313 |
+
demo.launch(
|
| 314 |
+
server_name="0.0.0.0",
|
| 315 |
+
server_port=7860,
|
| 316 |
+
share=False,
|
| 317 |
+
show_error=True,
|
| 318 |
+
inbrowser=False,
|
| 319 |
+
quiet=False,
|
| 320 |
+
ssr_mode=False, # no Node requirement
|
| 321 |
+
)
|
| 322 |
+
|
| 323 |
+
if __name__ == "__main__":
|
| 324 |
+
main()
|