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Browse files- .gitattributes +2 -0
- app.py +190 -0
- clean_list.json +0 -0
- color_features.json +3 -0
- image_subset.json +3 -0
.gitattributes
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@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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color_features.json filter=lfs diff=lfs merge=lfs -text
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image_subset.json filter=lfs diff=lfs merge=lfs -text
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app.py
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import matplotlib.pyplot as plt
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import seaborn as sns
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plt.rcParams["figure.figsize"] = (15, 10)
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plt.rcParams["figure.dpi"] = 125
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plt.rcParams["font.size"] = 14
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plt.rcParams['font.family'] = ['sans-serif']
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plt.rcParams['font.sans-serif'] = ['DejaVu Sans']
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plt.style.use('ggplot')
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sns.set_style("whitegrid", {'axes.grid': False})
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plt.rcParams['image.cmap'] = 'gray' # grayscale looks better
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from pathlib import Path
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import numpy as np
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import pandas as pd
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import os
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from skimage.io import imread as imread
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from skimage.util import montage
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from PIL import Image
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montage_rgb = lambda x: np.stack([montage(x[:, :, :, i]) for i in range(x.shape[3])], -1)
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from skimage.color import label2rgb
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image_dir = Path('D:/vscodeim/food classification/feature_food/')
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mapping_file = Path('D:/vscodeim/food classification/feature_food/clean_list.json')
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alleg_df = pd.read_json(mapping_file)
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alleg_df['image_path'] = alleg_df['image_path'].map(lambda x: image_dir / 'subset' / x)
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print(alleg_df['image_path'].map(lambda x: x.exists()).value_counts())
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allergens = alleg_df.columns[3:].tolist()
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alleg_df.sample(2)
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import os
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from pathlib import Path
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color_file = Path('D:/vscodeim/food classification/feature_food/color_features.json')
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color_feat_df = pd.read_json(color_file)
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color_feat_df['image_path'] = color_feat_df['image_path'].map(lambda x: image_dir / 'subset' / x)
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color_feat_dict = {c_row['image_path']: c_row['color_features'] for _, c_row in color_feat_df.iterrows()}
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# add a new color feature column
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alleg_df['color_features'] = alleg_df['image_path'].map(color_feat_dict.get)
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alleg_df.sample(2)
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co_all = np.corrcoef(np.stack(alleg_df[allergens].applymap(lambda x: 1 if x>0 else 0).values, 0).T)
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fig, ax1 = plt.subplots(1, 1, figsize=(10, 10))
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sns.heatmap(co_all, annot=True, fmt='2.1%', ax=ax1, cmap='RdBu', vmin=-1, vmax=1)
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ax1.set_xticklabels(allergens, rotation=90)
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ax1.set_yticklabels(allergens);
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# package the allergens together
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alleg_df['allergy_vec'] = alleg_df[allergens].applymap(lambda x: 1 if x>0 else 0).values.tolist()
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from sklearn.model_selection import train_test_split
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train_df, valid_df = train_test_split(alleg_df.drop(columns='ingredients_list'),
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test_size=0.1,
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random_state=2019,
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stratify=alleg_df['allergy_vec'].map(lambda x: x[0:3]))
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train_df.reset_index(inplace=True)
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valid_df.reset_index(inplace=True)
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print(train_df.shape[0], 'training images')
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print(valid_df.shape[0], 'validation images')
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train_x_vec = np.stack(train_df['color_features'].values, 0)
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train_y_vec = np.stack(train_df['allergy_vec'], 0)
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from sklearn.pipeline import make_pipeline
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from sklearn.ensemble import RandomForestRegressor
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from sklearn.preprocessing import RobustScaler # 导入 RobustScaler
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rf_pipe = make_pipeline(RobustScaler(), RandomForestRegressor(n_estimators=15))
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rf_pipe.fit(train_x_vec, train_y_vec)
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import streamlit as st
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import pandas as pd
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import numpy as np
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from sklearn.metrics import roc_auc_score, roc_curve, accuracy_score
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import matplotlib.pyplot as plt
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from imageio import imread
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@st.cache
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def show_model_results(in_model, picture_number=None):
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# Your data loading code here
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# Ensure 'valid_df', 'valid_x_vec', 'valid_y_vec', 'train_df', 'train_x_vec', 'train_y_vec', 'allergens' are defined
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valid_x_vec = np.stack(valid_df['color_features'].values, 0)
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valid_y_vec = np.stack(valid_df['allergy_vec'], 0)
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x_vec = valid_x_vec
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y_vec = valid_y_vec
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valid_pred = in_model.predict(x_vec)
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valid_num = picture_number
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fig, m_axs = plt.subplots(2, 2, figsize=(10, 10))
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all_rows = []
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ax1 = m_axs[0, 0]
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for i, c_allergen in enumerate(allergens):
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tpr, fpr, _ = roc_curve(y_vec[:, i], valid_pred[:, i])
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auc = roc_auc_score(y_vec[:, i], valid_pred[:, i])
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acc = accuracy_score(y_vec[:, i], valid_pred[:, i] > 0.5)
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ax1.plot(tpr, fpr, '.-', label='{}: AUC {:0.2f}, Accuracy: {:2.0%}'.format(c_allergen, auc, acc))
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all_rows += [{'allegen': c_allergen,
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'prediction': valid_pred[j, i],
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'class': 'Positive' if y_vec[j, i] > 0.5 else 'Negative'}
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for j in range(valid_pred.shape[0])]
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d_ax = m_axs[0, 1]
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t_yp = np.mean(valid_pred, 0)
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t_y = np.mean(y_vec, 0)
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d_ax.barh(np.arange(len(allergens)) + 0.1, t_yp, alpha=0.5, label='Predicted')
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d_ax.barh(np.arange(len(allergens)) - 0.1, t_y + 0.001, alpha=0.5, label='Ground Truth')
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d_ax.set_xlim(0, 1)
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d_ax.set_yticks(range(len(allergens)))
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d_ax.set_yticklabels(allergens, rotation=0)
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d_ax.set_title('Overall')
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d_ax.legend()
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ax1.legend()
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for (_, c_row), (c_ax, d_ax) in zip(
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valid_df.iloc[valid_num:valid_num+1].iterrows(),
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m_axs[1:]):
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c_ax.imshow(imread(c_row['image_path']))
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c_ax.set_title(c_row['title'])
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c_ax.axis('off')
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t_yp = in_model.predict(np.expand_dims(c_row['color_features'], 0))
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t_y = np.array(c_row['allergy_vec'])
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d_ax.barh(np.arange(len(allergens)) + 0.1, t_yp[0], alpha=0.5, label='Predicted')
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d_ax.barh(np.arange(len(allergens)) - 0.1, t_y + 0.001, alpha=0.5, label='Ground Truth')
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d_ax.set_yticks(range(len(allergens)))
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d_ax.set_yticklabels(allergens, rotation=0)
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d_ax.set_xlim(0, 1)
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d_ax.legend()
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# 将当前图像添加到 Streamlit 页面
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st.pyplot(fig)
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return st.write("Completed")
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# Assuming you have already defined 'rf_pipe' and 'valid_df' with image paths
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image_paths = valid_df['image_path'].tolist()
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# Streamlit app
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# Streamlit app
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def main():
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st.title('Model Results')
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st.write(f'<span style="font-size:20px;">This is a prototype, so we use the images from the test set as examples.</span>', unsafe_allow_html=True)
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image_paths = valid_df['image_path'].tolist()
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num_rows = 2
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num_cols = 5
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fig, axes = plt.subplots(num_rows, num_cols, figsize=(15, 6))
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for i in range(num_rows):
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for j in range(num_cols):
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index = i * num_cols + j + 21 # Starting from index 21
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image = imread(image_paths[index])
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axes[i, j].imshow(image)
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axes[i, j].axis('off')
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axes[i, j].set_title(f'Image {index-20}')
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st.pyplot(fig)
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num_images = 10
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# User interaction to select image
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st.write(f'<span style="font-size:20px;">Enter the image number you want to analyze.</span>', unsafe_allow_html=True)
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choice = st.number_input(f"Range (1-{num_images}): ", min_value=1, max_value=num_images)
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# Show model results
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if st.button('Show Results'):
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show_model_results(rf_pipe, choice+20)
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if __name__ == "__main__":
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main()
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clean_list.json
ADDED
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The diff for this file is too large to render.
See raw diff
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color_features.json
ADDED
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:1c77b1fb4901ec6abd8c19c9bacd2728cedaad6cb3e5a699da6808d5bf4bdb44
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size 18577814
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image_subset.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:040c523a6f1d15f1e78ba215766a82b71274bbf128885d840b68582ee40ad9a8
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size 67109125
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