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Update src/streamlit_app.py

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  1. src/streamlit_app.py +85 -38
src/streamlit_app.py CHANGED
@@ -1,40 +1,87 @@
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- import altair as alt
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- import numpy as np
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- import pandas as pd
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  import streamlit as st
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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- """
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- # Welcome to Streamlit!
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-
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- Edit `/streamlit_app.py` to customize this app to your heart's desire :heart:.
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- If you have any questions, checkout our [documentation](https://docs.streamlit.io) and [community
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- forums](https://discuss.streamlit.io).
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-
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- In the meantime, below is an example of what you can do with just a few lines of code:
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- """
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-
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- num_points = st.slider("Number of points in spiral", 1, 10000, 1100)
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- num_turns = st.slider("Number of turns in spiral", 1, 300, 31)
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-
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- indices = np.linspace(0, 1, num_points)
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- theta = 2 * np.pi * num_turns * indices
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- radius = indices
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-
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- x = radius * np.cos(theta)
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- y = radius * np.sin(theta)
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-
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- df = pd.DataFrame({
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- "x": x,
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- "y": y,
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- "idx": indices,
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- "rand": np.random.randn(num_points),
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- })
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-
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- st.altair_chart(alt.Chart(df, height=700, width=700)
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- .mark_point(filled=True)
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- .encode(
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- x=alt.X("x", axis=None),
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- y=alt.Y("y", axis=None),
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- color=alt.Color("idx", legend=None, scale=alt.Scale()),
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- size=alt.Size("rand", legend=None, scale=alt.Scale(range=[1, 150])),
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- ))
 
 
 
 
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  import streamlit as st
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+ import numpy as np
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+ import tensorflow as tf
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+ import pydicom
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+ import cv2
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+
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+ # --------------------------------------------------
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+ # App Config
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+ # --------------------------------------------------
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+ st.set_page_config(page_title="Pneumonia Detection", layout="centered")
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+
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+ st.title("🫁 Pneumonia Detection from Chest X-ray")
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+ st.write("Upload a chest X-ray (DICOM) to detect pneumonia.")
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+
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+ # --------------------------------------------------
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+ # Load Serialized Model (Inference Only)
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+ # --------------------------------------------------
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+ @st.cache_resource
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+ def load_model():
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+ return tf.keras.models.load_model(
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+ "pneumonia_final_model.keras",
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+ compile=False # avoids optimizer warnings
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+ )
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+
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+ model = load_model()
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+
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+ # --------------------------------------------------
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+ # Preprocess DICOM
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+ # --------------------------------------------------
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+ def preprocess_dicom(uploaded_file):
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+ dicom = pydicom.dcmread(uploaded_file)
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+ img = dicom.pixel_array.astype(np.float32)
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+
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+ img = (img - img.min()) / (img.max() - img.min() + 1e-6)
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+ img = cv2.resize(img, (224, 224))
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+
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+ # grayscale → RGB
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+ img = np.stack([img] * 3, axis=-1)
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+ img = np.expand_dims(img, axis=0)
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+
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+ return img
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+
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+ # --------------------------------------------------
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+ # File Upload
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+ # --------------------------------------------------
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+ uploaded_file = st.file_uploader(
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+ "Upload Chest X-ray (.dcm file)",
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+ type=["dcm"]
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+ )
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+
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+ # --------------------------------------------------
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+ # Prediction
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+ # --------------------------------------------------
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+ if uploaded_file is not None:
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+ try:
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+ image = preprocess_dicom(uploaded_file)
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+
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+ with st.spinner("Analyzing X-ray..."):
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+ probs = model.predict(image)[0]
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+
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+ # ---- 3-class → binary mapping ----
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+ pneumonia_prob = float(probs[2])
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+ non_pneumonia_prob = float(probs[0] + probs[1])
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+
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+ if pneumonia_prob >= 0.5:
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+ prediction = "Pneumonia"
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+ confidence = pneumonia_prob
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+ st.error(f"⚠️ {prediction} detected")
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+ else:
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+ prediction = "Non-Pneumonia"
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+ confidence = non_pneumonia_prob
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+ st.success(f"✅ {prediction}")
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+
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+ st.subheader("Prediction Result")
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+ st.write(f"**Prediction:** {prediction}")
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+ st.write(f"**Confidence:** {confidence:.2%}")
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+
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+ # Optional: show raw probabilities (for transparency)
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+ with st.expander("View raw class probabilities"):
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+ st.write({
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+ "Normal": float(probs[0]),
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+ "No Lung Opacity": float(probs[1]),
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+ "Lung Opacity (Pneumonia)": float(probs[2])
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+ })
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+ except Exception as e:
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+ st.error(f"Error processing file: {e}")