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Update src/streamlit_app.py
Browse files- src/streamlit_app.py +85 -38
src/streamlit_app.py
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import altair as alt
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import numpy as np
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import pandas as pd
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import streamlit as st
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Edit `/streamlit_app.py` to customize this app to your heart's desire :heart:.
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If you have any questions, checkout our [documentation](https://docs.streamlit.io) and [community
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forums](https://discuss.streamlit.io).
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In the meantime, below is an example of what you can do with just a few lines of code:
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"""
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num_points = st.slider("Number of points in spiral", 1, 10000, 1100)
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num_turns = st.slider("Number of turns in spiral", 1, 300, 31)
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indices = np.linspace(0, 1, num_points)
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theta = 2 * np.pi * num_turns * indices
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radius = indices
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x = radius * np.cos(theta)
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y = radius * np.sin(theta)
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df = pd.DataFrame({
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"x": x,
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"y": y,
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"idx": indices,
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"rand": np.random.randn(num_points),
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})
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st.altair_chart(alt.Chart(df, height=700, width=700)
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.mark_point(filled=True)
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.encode(
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x=alt.X("x", axis=None),
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y=alt.Y("y", axis=None),
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color=alt.Color("idx", legend=None, scale=alt.Scale()),
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size=alt.Size("rand", legend=None, scale=alt.Scale(range=[1, 150])),
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))
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import streamlit as st
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import numpy as np
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import tensorflow as tf
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import pydicom
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import cv2
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# --------------------------------------------------
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# App Config
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# --------------------------------------------------
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st.set_page_config(page_title="Pneumonia Detection", layout="centered")
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st.title("🫁 Pneumonia Detection from Chest X-ray")
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st.write("Upload a chest X-ray (DICOM) to detect pneumonia.")
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# --------------------------------------------------
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# Load Serialized Model (Inference Only)
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# --------------------------------------------------
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@st.cache_resource
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def load_model():
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return tf.keras.models.load_model(
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"pneumonia_final_model.keras",
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compile=False # avoids optimizer warnings
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)
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model = load_model()
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# --------------------------------------------------
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# Preprocess DICOM
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# --------------------------------------------------
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def preprocess_dicom(uploaded_file):
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dicom = pydicom.dcmread(uploaded_file)
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img = dicom.pixel_array.astype(np.float32)
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img = (img - img.min()) / (img.max() - img.min() + 1e-6)
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img = cv2.resize(img, (224, 224))
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# grayscale → RGB
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img = np.stack([img] * 3, axis=-1)
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img = np.expand_dims(img, axis=0)
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return img
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# --------------------------------------------------
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# File Upload
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# --------------------------------------------------
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uploaded_file = st.file_uploader(
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"Upload Chest X-ray (.dcm file)",
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type=["dcm"]
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)
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# --------------------------------------------------
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# Prediction
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# --------------------------------------------------
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if uploaded_file is not None:
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try:
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image = preprocess_dicom(uploaded_file)
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with st.spinner("Analyzing X-ray..."):
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probs = model.predict(image)[0]
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# ---- 3-class → binary mapping ----
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pneumonia_prob = float(probs[2])
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non_pneumonia_prob = float(probs[0] + probs[1])
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if pneumonia_prob >= 0.5:
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prediction = "Pneumonia"
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confidence = pneumonia_prob
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st.error(f"⚠️ {prediction} detected")
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else:
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prediction = "Non-Pneumonia"
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confidence = non_pneumonia_prob
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st.success(f"✅ {prediction}")
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st.subheader("Prediction Result")
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st.write(f"**Prediction:** {prediction}")
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st.write(f"**Confidence:** {confidence:.2%}")
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# Optional: show raw probabilities (for transparency)
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with st.expander("View raw class probabilities"):
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st.write({
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"Normal": float(probs[0]),
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"No Lung Opacity": float(probs[1]),
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"Lung Opacity (Pneumonia)": float(probs[2])
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})
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except Exception as e:
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st.error(f"Error processing file: {e}")
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