README.md

---
title: Critical Deep Resarch
emoji: 🐉
colorFrom: red
colorTo: yellow
sdk: gradio
sdk_version: "6.0.1"
python_version: "3.11"
app_file: src/app.py
hf_oauth: true
hf_oauth_expiration_minutes: 480
hf_oauth_scopes:
 - inference-api
pinned: true
license: mit
tags:
  - mcp-in-action-track-enterprise
  - mcp-hackathon
  - drug-repurposing
  - biomedical-ai
  - pydantic-ai
  - llamaindex
  - modal
---

> [!IMPORTANT]
> **You are reading the Gradio Demo README!**
> 
> - 📚 **Documentation**: See our [technical documentation](deepcritical.github.io/GradioDemo/) for detailed information
> - 📖 **Complete README**: Check out the [full README](.github/README.md) for setup, configuration, and contribution guidelines
> - 🏆 **Hackathon Submission**: Keep reading below for more information about our MCP Hackathon submission

<div align="center">

[![GitHub](https://img.shields.io/github/stars/DeepCritical/GradioDemo?style=for-the-badge&logo=github&logoColor=white&label=GitHub&labelColor=181717&color=181717)](https://github.com/DeepCritical/GradioDemo)
[![Documentation](https://img.shields.io/badge/Docs-0080FF?style=for-the-badge&logo=readthedocs&logoColor=white&labelColor=0080FF&color=0080FF)](deepcritical.github.io/GradioDemo/)
[![Demo](https://img.shields.io/badge/Demo-FFD21E?style=for-the-badge&logo=huggingface&logoColor=white&labelColor=FFD21E&color=FFD21E)](https://huggingface.co/spaces/DataQuests/DeepCritical)
[![codecov](https://codecov.io/gh/DeepCritical/GradioDemo/graph/badge.svg?token=B1f05RCGpz)](https://codecov.io/gh/DeepCritical/GradioDemo)
[![Join us on Discord](https://img.shields.io/discord/1109943800132010065?label=Discord&logo=discord&style=flat-square)](https://discord.gg/qdfnvSPcqP) 


</div>

# DeepCritical

## About

The [Deep Critical Gradio Hackathon Team](### Team) met online in the Alzheimer's Critical Literature Review Group in the Hugging Science initiative. We're building the agent framework we want to use for ai assisted research to [turn the vast amounts of clinical data into cures](https://github.com/DeepCritical/GradioDemo).

For this hackathon we're proposing a simple yet powerful Deep Research Agent that iteratively looks for the answer until it finds it using general purpose websearch and special purpose retrievers for technical retrievers. 

## Deep Critical In the Medial 

- Social Medial Posts about Deep Critical :
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## Important information

- **[readme](.github\README.md)**: configure, deploy , contribute and learn more here.
- **[docs](deepcritical.github.io/GradioDemo/)**: want to know how all this works ? read our detailed technical documentation here.
- **[demo](https://huggingface/spaces/DataQuests/DeepCritical)**: Try our demo on huggingface
- **[team](### Team)**: Join us , or follow us !
- **[video]**: See our demo video

## Future Developments

- [] Apply Deep Research Systems To Generate Short Form Video (up to 5 minutes)
- [] Visualize Pydantic Graphs as Loading Screens in the UI
- [] Improve Data Science with more Complex Graph Agents
- [] Create Deep Critical Drug Reporposing / Discovery Demo
- [] Create Deep Critical Literal Review
- [] Create Deep Critical Hypothesis Generator
- [] Create PyPi Package 

## Completed

- [x] **Multi-Source Search**: PubMed, ClinicalTrials.gov, bioRxiv/medRxiv
- [x] **MCP Integration**: Use our tools from Claude Desktop or any MCP client
- [x] **HuggingFace OAuth**: Sign in with HuggingFace 
- [x] **Modal Sandbox**: Secure execution of AI-generated statistical code
- [x] **LlamaIndex RAG**: Semantic search and evidence synthesis
- [x] **HuggingfaceInference**: 
- [x] **HuggingfaceMCP Custom Config To Use Community Tools**:
- [x] **Strongly Typed Composable Graphs**:
- [x] **Specialized Research Teams of Agents**: 

### Team
- **ZJ**
    - 💼 [LinkedIn](https://www.linkedin.com/in/josephpollack/)
- **Mario Aderman**
    - 🤗 [HuggingFace](https://huggingface.co/SeasonalFall84)
    - 💼 [LinkedIn](https://www.linkedin.com/in/mario-aderman/)
    - 𝕏 [X](https://x.com/marioaderman)
- **Joseph Pollack**
    - 🤗 [HuggingFace](https://huggingface.co/Tonic)
    - 💼 [LinkedIn](https://www.linkedin.com/in/josephpollack/)
    - 𝕏 [X](https://x.com/josephpollack)
- **Virat Chauran**
    - 𝕏 [X](https://x.com/viratzzs/)
    - 💼 [LinkedIn](https://www.linkedin.com/in/viratchauhan/)
    - 🤗 [HuggingFace](https://huggingface.co/ViratChauhan)
- **Anna Bossler**
    -  💼 [LinkedIn](https://www.linkedin.com/in/ana-bossler-07304717)


## Acknowledgements

- [DeepBoner](https://hf.co/spaces/mcp-1st-birthday/deepboner)
- Magentic Paper
- [Huggingface](https://hf.co)
- [Gradio](https://gradio.app)
- [DeepCritical](https://github.com/DeepCritical)
- [Modal](https://modal.com)
- Microsoft
- Pydantic
- Llama-index
- Anthhropic/MCP
- All our Tool Providers


## Links

[![GitHub](https://img.shields.io/github/stars/DeepCritical/GradioDemo?style=for-the-badge&logo=github&logoColor=white&label=GitHub&labelColor=181717&color=181717)](https://github.com/DeepCritical/GradioDemo)
[![Documentation](https://img.shields.io/badge/Docs-0080FF?style=for-the-badge&logo=readthedocs&logoColor=white&labelColor=0080FF&color=0080FF)](deepcritical.github.io/GradioDemo/)
[![Demo](https://img.shields.io/badge/Demo-FFD21E?style=for-the-badge&logo=huggingface&logoColor=white&labelColor=FFD21E&color=FFD21E)](https://huggingface.co/spaces/DataQuests/DeepCritical)
[![codecov](https://codecov.io/gh/DeepCritical/GradioDemo/graph/badge.svg?token=B1f05RCGpz)](https://codecov.io/gh/DeepCritical/GradioDemo)
[![Join us on Discord](https://img.shields.io/discord/1109943800132010065?label=Discord&logo=discord&style=flat-square)](https://discord.gg/qdfnvSPcqP)