GeneTypeClassifier / utils.py
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🚀 Initial upload of my app
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def get_kmers(sequence, size=3):
"""
Convert a nucleotide sequence into k-mers (default: 3-mers).
Example: 'ATGC' -> 'ATG TGC'
"""
if not isinstance(sequence, str):
return ""
return " ".join([sequence[i:i+size] for i in range(len(sequence) - size + 1)])