Spaces:
Runtime error
Runtime error
Anigor66 commited on
Commit ·
6b32938
1
Parent(s): f61a56b
Update API to match backend format - add segment_points, segment_box, segment_multiple_boxes
Browse files
app.py
CHANGED
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@@ -1,5 +1,7 @@
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"""
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-
HuggingFace Space for MedSAM Inference
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Deploy this to: https://huggingface.co/spaces/YOUR_USERNAME/medsam-inference
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"""
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import gradio as gr
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@@ -33,61 +35,331 @@ def patched_torch_load(f, *args, **kwargs):
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torch.load = patched_torch_load
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try:
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finally:
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# Restore original torch.load
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torch.load = original_torch_load
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"""
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Segment image with point prompts
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Args:
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image: PIL Image
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{
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"
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"labels": [1, 0, ...]
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}
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Returns:
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JSON string
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"""
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try:
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# Parse input
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points_data = json.loads(points_json)
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coords = np.array(points_data["coords"])
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labels = np.array(points_data["labels"])
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multimask_output = points_data.get("multimask_output", True)
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# Convert PIL to numpy
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image_array = np.array(image)
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# Set image in predictor
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predictor.set_image(image_array)
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# Run prediction
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masks, scores, logits = predictor.predict(
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point_coords=coords,
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point_labels=labels,
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multimask_output=multimask_output
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)
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# Convert masks to lists (JSON serializable)
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masks_list = []
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scores_list = []
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for i, (mask, score) in enumerate(zip(masks, scores)):
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# Convert boolean mask to uint8
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mask_uint8 = (mask * 255).astype(np.uint8)
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# Encode mask as base64 PNG
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mask_image = Image.fromarray(mask_uint8)
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buffer = io.BytesIO()
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mask_image.save(buffer, format='PNG')
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masks_list.append({
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'mask_base64': mask_base64,
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'mask_shape': mask.shape,
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'mask_data': mask.tolist()
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})
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scores_list.append(float(score))
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'success': True,
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'masks': masks_list,
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'scores': scores_list,
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'num_masks': len(masks_list)
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}
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return json.dumps(result)
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except Exception as e:
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'success': False,
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'error': str(e)
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}
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return json.dumps(error_result)
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-
def
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"""
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-
Segment
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Args:
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image: PIL Image
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box_json: JSON string with format:
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{
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"box": [x1, y1, x2, y2], # Top-left and bottom-right corners
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"multimask_output": true/false
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}
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Returns:
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JSON string with masks and scores
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"""
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try:
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# Parse input
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box_data = json.loads(box_json)
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box = np.array(box_data["box"])
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multimask_output = box_data.get("multimask_output", False)
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# Convert PIL to numpy
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image_array = np.array(image)
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# Set image in predictor
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predictor.set_image(image_array)
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# Run prediction with box
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masks, scores, logits = predictor.predict(
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point_coords=None,
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point_labels=None,
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multimask_output=multimask_output
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)
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# Convert masks to lists (JSON serializable)
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masks_list = []
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scores_list = []
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for i, (mask, score) in enumerate(zip(masks, scores)):
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# Convert boolean mask to uint8
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mask_uint8 = (mask * 255).astype(np.uint8)
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# Encode mask as base64 PNG
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mask_image = Image.fromarray(mask_uint8)
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buffer = io.BytesIO()
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mask_image.save(buffer, format='PNG')
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})
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scores_list.append(float(score))
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'success': True,
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'masks': masks_list,
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'scores': scores_list,
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'num_masks': len(masks_list),
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'box': box.tolist()
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}
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return json.dumps(result)
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except Exception as e:
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import traceback
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'success': False,
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'error': str(e),
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'traceback': traceback.format_exc()
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}
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return json.dumps(error_result)
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def segment_simple(image, x, y, label=1, multimask=True):
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"""
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Simple single-point segmentation interface for Gradio UI
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Args:
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image: PIL Image
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x: X coordinate
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y: Y coordinate
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label: 1 for foreground, 0 for background
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multimask: Whether to output multiple masks
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Returns:
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Mask image and score
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"""
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try:
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points_json = json.dumps({
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"coords": [[int(x), int(y)]],
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"multimask_output": multimask
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})
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result_json =
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result = json.loads(result_json)
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if not result['success']:
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return None, f"Error: {result['error']}"
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# Get best mask (highest score)
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best_idx = np.argmax(result['scores'])
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best_mask_base64 = result['masks'][best_idx]['mask_base64']
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best_score = result['scores'][best_idx]
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# Decode mask
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mask_bytes = base64.b64decode(best_mask_base64)
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mask_image = Image.open(io.BytesIO(mask_bytes))
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return None, f"Error: {str(e)}"
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#
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with gr.Blocks(title="MedSAM Inference API") as demo:
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gr.Markdown("# 🏥 MedSAM Inference API")
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gr.Markdown("Point-based segmentation using Fine-Tuned MedSAM")
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with gr.Tabs():
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# Tab 1: API
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with gr.Tab("API
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gr.Markdown("""
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##
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**Input Format:**
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```json
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{
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"
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"labels": [1, 0]
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"multimask_output": true
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}
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```
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**Output Format:**
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```json
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{
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"success": true,
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"masks": [...],
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"
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"
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}
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```
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""")
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with gr.Row():
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with gr.Column():
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label="
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placeholder='{"
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lines=3
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)
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with gr.Column():
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fn=
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inputs=[
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outputs=
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)
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'{"coords": [[200, 200]], "labels": [1], "multimask_output": true}'
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]
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],
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inputs=[api_image, api_points]
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)
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# Tab
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with gr.Tab("Box
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gr.Markdown("""
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## Box-
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-
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**Input Format:**
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```json
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{
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"
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}
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```
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Where (x1, y1) is top-left corner and (x2, y2) is bottom-right corner.
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""")
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with gr.Row():
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with gr.Column():
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box_image = gr.Image(type="pil", label="Input Image")
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label="
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placeholder='{"
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lines=3
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)
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box_button = gr.Button("
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with gr.Column():
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box_output = gr.Textbox(label="Result JSON", lines=15)
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box_button.click(
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fn=
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inputs=[box_image,
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outputs=box_output
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)
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| 334 |
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| 335 |
-
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-
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-
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-
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-
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-
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)
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-
# Tab
|
| 347 |
with gr.Tab("Simple Interface"):
|
| 348 |
gr.Markdown("## Click-based Segmentation")
|
| 349 |
gr.Markdown("Enter X, Y coordinates to segment")
|
|
@@ -378,41 +705,39 @@ with gr.Blocks(title="MedSAM Inference API") as demo:
|
|
| 378 |
|
| 379 |
gr.Markdown("""
|
| 380 |
---
|
| 381 |
-
### 📡 API Usage from Python
|
| 382 |
|
| 383 |
```python
|
| 384 |
-
import
|
| 385 |
import json
|
| 386 |
-
import base64
|
| 387 |
-
from PIL import Image
|
| 388 |
|
| 389 |
-
|
| 390 |
-
API_URL = "https://YOUR_USERNAME-medsam-inference.hf.space/api/predict"
|
| 391 |
|
| 392 |
-
#
|
| 393 |
-
|
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|
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|
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|
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-
"
|
| 400 |
-
|
| 401 |
-
})
|
| 402 |
|
| 403 |
-
#
|
| 404 |
-
|
| 405 |
-
|
| 406 |
-
json
|
| 407 |
-
"
|
| 408 |
-
|
| 409 |
-
|
| 410 |
-
]
|
| 411 |
-
}
|
| 412 |
)
|
| 413 |
|
| 414 |
-
|
| 415 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 416 |
```
|
| 417 |
""")
|
| 418 |
|
|
@@ -422,5 +747,5 @@ if __name__ == "__main__":
|
|
| 422 |
server_name="0.0.0.0",
|
| 423 |
server_port=7860,
|
| 424 |
share=False,
|
| 425 |
-
show_error=True
|
| 426 |
)
|
|
|
|
| 1 |
"""
|
| 2 |
+
HuggingFace Space for MedSAM Inference
|
| 3 |
+
API-compatible with Dense-Captioning-Toolkit backend
|
| 4 |
+
|
| 5 |
Deploy this to: https://huggingface.co/spaces/YOUR_USERNAME/medsam-inference
|
| 6 |
"""
|
| 7 |
import gradio as gr
|
|
|
|
| 35 |
torch.load = patched_torch_load
|
| 36 |
|
| 37 |
try:
|
| 38 |
+
sam = sam_model_registry[MODEL_TYPE](checkpoint=MODEL_CHECKPOINT)
|
| 39 |
+
sam.to(device=device)
|
| 40 |
+
sam.eval()
|
| 41 |
+
predictor = SamPredictor(sam)
|
| 42 |
+
print("✓ MedSAM model loaded successfully!")
|
| 43 |
finally:
|
| 44 |
# Restore original torch.load
|
| 45 |
torch.load = original_torch_load
|
| 46 |
|
| 47 |
|
| 48 |
+
# =============================================================================
|
| 49 |
+
# API FUNCTIONS - MATCHING BACKEND FORMAT (backend/app.py)
|
| 50 |
+
# =============================================================================
|
| 51 |
+
|
| 52 |
+
def segment_points(image, request_json):
|
| 53 |
"""
|
| 54 |
+
Segment image with point prompts - MATCHES BACKEND /api/medsam/segment_points
|
| 55 |
+
|
| 56 |
+
Each point gets its own small segment (converted to small bounding box).
|
| 57 |
+
This matches the backend behavior where points are converted to small boxes.
|
| 58 |
|
| 59 |
Args:
|
| 60 |
image: PIL Image
|
| 61 |
+
request_json: JSON string with format:
|
| 62 |
{
|
| 63 |
+
"points": [[x1, y1], [x2, y2], ...],
|
| 64 |
+
"labels": [1, 0, ...] # 1=foreground, 0=background
|
| 65 |
+
}
|
| 66 |
+
|
| 67 |
+
Returns:
|
| 68 |
+
JSON string matching backend response format:
|
| 69 |
+
{
|
| 70 |
+
"success": true,
|
| 71 |
+
"masks": [{"mask": [[...]], "confidence": 0.95}, ...],
|
| 72 |
+
"confidences": [0.95, ...],
|
| 73 |
+
"method": "medsam_points_individual"
|
| 74 |
+
}
|
| 75 |
+
"""
|
| 76 |
+
try:
|
| 77 |
+
# Parse input
|
| 78 |
+
data = json.loads(request_json)
|
| 79 |
+
points = data.get("points", [])
|
| 80 |
+
labels = data.get("labels", [])
|
| 81 |
+
|
| 82 |
+
if not points:
|
| 83 |
+
return json.dumps({'success': False, 'error': 'At least one point is required'})
|
| 84 |
+
|
| 85 |
+
# Convert PIL to numpy
|
| 86 |
+
image_array = np.array(image)
|
| 87 |
+
H, W = image_array.shape[:2]
|
| 88 |
+
|
| 89 |
+
# Set image in predictor
|
| 90 |
+
predictor.set_image(image_array)
|
| 91 |
+
|
| 92 |
+
# Process each point individually (like backend does)
|
| 93 |
+
box_size = 20 # Small box size for point-based segmentation
|
| 94 |
+
masks_list = []
|
| 95 |
+
confidences_list = []
|
| 96 |
+
|
| 97 |
+
for i, pt in enumerate(points):
|
| 98 |
+
x, y = pt
|
| 99 |
+
|
| 100 |
+
# Create a small bounding box centered on the point (matching backend behavior)
|
| 101 |
+
x1 = max(0, x - box_size // 2)
|
| 102 |
+
y1 = max(0, y - box_size // 2)
|
| 103 |
+
x2 = min(W - 1, x + box_size // 2)
|
| 104 |
+
y2 = min(H - 1, y + box_size // 2)
|
| 105 |
+
bbox = np.array([x1, y1, x2, y2])
|
| 106 |
+
|
| 107 |
+
print(f"Processing point {i+1}/{len(points)}: ({x}, {y}) -> bbox: {bbox.tolist()}")
|
| 108 |
+
|
| 109 |
+
# Run prediction with box
|
| 110 |
+
masks, scores, logits = predictor.predict(
|
| 111 |
+
point_coords=None,
|
| 112 |
+
point_labels=None,
|
| 113 |
+
box=bbox,
|
| 114 |
+
multimask_output=False
|
| 115 |
+
)
|
| 116 |
+
|
| 117 |
+
if len(masks) > 0:
|
| 118 |
+
# Take the best mask
|
| 119 |
+
best_idx = np.argmax(scores)
|
| 120 |
+
mask = masks[best_idx]
|
| 121 |
+
score = float(scores[best_idx])
|
| 122 |
+
|
| 123 |
+
masks_list.append({
|
| 124 |
+
'mask': mask.astype(np.uint8).tolist(),
|
| 125 |
+
'confidence': score
|
| 126 |
+
})
|
| 127 |
+
confidences_list.append(score)
|
| 128 |
+
print(f"Point {i+1} segmentation successful, confidence: {score:.4f}")
|
| 129 |
+
else:
|
| 130 |
+
print(f"Point {i+1} segmentation failed")
|
| 131 |
+
|
| 132 |
+
if masks_list:
|
| 133 |
+
result = {
|
| 134 |
+
'success': True,
|
| 135 |
+
'masks': masks_list,
|
| 136 |
+
'confidences': confidences_list,
|
| 137 |
+
'method': 'medsam_points_individual'
|
| 138 |
+
}
|
| 139 |
+
else:
|
| 140 |
+
result = {'success': False, 'error': 'All point segmentations failed'}
|
| 141 |
+
|
| 142 |
+
return json.dumps(result)
|
| 143 |
+
|
| 144 |
+
except Exception as e:
|
| 145 |
+
import traceback
|
| 146 |
+
return json.dumps({
|
| 147 |
+
'success': False,
|
| 148 |
+
'error': str(e),
|
| 149 |
+
'traceback': traceback.format_exc()
|
| 150 |
+
})
|
| 151 |
+
|
| 152 |
+
|
| 153 |
+
def segment_box(image, request_json):
|
| 154 |
+
"""
|
| 155 |
+
Segment image with a single bounding box - MATCHES BACKEND /api/medsam/segment_box
|
| 156 |
+
|
| 157 |
+
Args:
|
| 158 |
+
image: PIL Image
|
| 159 |
+
request_json: JSON string with format:
|
| 160 |
+
{
|
| 161 |
+
"bbox": [x1, y1, x2, y2] # Can be array or object with x1,y1,x2,y2
|
| 162 |
+
}
|
| 163 |
+
|
| 164 |
+
Returns:
|
| 165 |
+
JSON string matching backend response format:
|
| 166 |
+
{
|
| 167 |
+
"success": true,
|
| 168 |
+
"mask": [[...]],
|
| 169 |
+
"confidence": 0.95,
|
| 170 |
+
"method": "medsam_box"
|
| 171 |
+
}
|
| 172 |
+
"""
|
| 173 |
+
try:
|
| 174 |
+
# Parse input
|
| 175 |
+
data = json.loads(request_json)
|
| 176 |
+
bbox = data.get("bbox", [])
|
| 177 |
+
|
| 178 |
+
# Handle both array format [x1,y1,x2,y2] and object format {x1,y1,x2,y2}
|
| 179 |
+
if isinstance(bbox, dict):
|
| 180 |
+
bbox = [bbox.get('x1', 0), bbox.get('y1', 0), bbox.get('x2', 0), bbox.get('y2', 0)]
|
| 181 |
+
|
| 182 |
+
if not bbox or len(bbox) != 4:
|
| 183 |
+
return json.dumps({'success': False, 'error': 'Valid bounding box required [x1, y1, x2, y2]'})
|
| 184 |
+
|
| 185 |
+
box = np.array(bbox)
|
| 186 |
+
|
| 187 |
+
# Convert PIL to numpy
|
| 188 |
+
image_array = np.array(image)
|
| 189 |
+
|
| 190 |
+
# Set image in predictor
|
| 191 |
+
predictor.set_image(image_array)
|
| 192 |
+
|
| 193 |
+
# Run prediction with box
|
| 194 |
+
masks, scores, logits = predictor.predict(
|
| 195 |
+
point_coords=None,
|
| 196 |
+
point_labels=None,
|
| 197 |
+
box=box,
|
| 198 |
+
multimask_output=False
|
| 199 |
+
)
|
| 200 |
+
|
| 201 |
+
if len(masks) > 0:
|
| 202 |
+
best_idx = np.argmax(scores)
|
| 203 |
+
mask = masks[best_idx]
|
| 204 |
+
score = float(scores[best_idx])
|
| 205 |
+
|
| 206 |
+
result = {
|
| 207 |
+
'success': True,
|
| 208 |
+
'mask': mask.astype(np.uint8).tolist(),
|
| 209 |
+
'confidence': score,
|
| 210 |
+
'method': 'medsam_box'
|
| 211 |
+
}
|
| 212 |
+
else:
|
| 213 |
+
result = {'success': False, 'error': 'Segmentation failed'}
|
| 214 |
+
|
| 215 |
+
return json.dumps(result)
|
| 216 |
+
|
| 217 |
+
except Exception as e:
|
| 218 |
+
import traceback
|
| 219 |
+
return json.dumps({
|
| 220 |
+
'success': False,
|
| 221 |
+
'error': str(e),
|
| 222 |
+
'traceback': traceback.format_exc()
|
| 223 |
+
})
|
| 224 |
+
|
| 225 |
+
|
| 226 |
+
def segment_multiple_boxes(image, request_json):
|
| 227 |
+
"""
|
| 228 |
+
Segment image with multiple bounding boxes - MATCHES BACKEND /api/medsam/segment_multiple_boxes
|
| 229 |
+
|
| 230 |
+
This is the main API endpoint used by the frontend for box-based segmentation.
|
| 231 |
+
|
| 232 |
+
Args:
|
| 233 |
+
image: PIL Image
|
| 234 |
+
request_json: JSON string with format:
|
| 235 |
+
{
|
| 236 |
+
"bboxes": [
|
| 237 |
+
[x1, y1, x2, y2], # Array format
|
| 238 |
+
{"x1": 10, "y1": 20, "x2": 100, "y2": 200} # Object format (also supported)
|
| 239 |
+
]
|
| 240 |
}
|
| 241 |
|
| 242 |
Returns:
|
| 243 |
+
JSON string matching backend response format:
|
| 244 |
+
{
|
| 245 |
+
"success": true,
|
| 246 |
+
"masks": [{"mask": [[...]], "confidence": 0.95}, ...],
|
| 247 |
+
"confidences": [0.95, ...],
|
| 248 |
+
"method": "medsam_multiple_boxes"
|
| 249 |
+
}
|
| 250 |
"""
|
| 251 |
try:
|
| 252 |
# Parse input
|
| 253 |
+
data = json.loads(request_json)
|
| 254 |
+
bboxes = data.get("bboxes", [])
|
| 255 |
+
|
| 256 |
+
if not bboxes:
|
| 257 |
+
return json.dumps({'success': False, 'error': 'At least one bounding box is required'})
|
| 258 |
+
|
| 259 |
+
# Convert PIL to numpy
|
| 260 |
+
image_array = np.array(image)
|
| 261 |
+
|
| 262 |
+
# Set image in predictor
|
| 263 |
+
predictor.set_image(image_array)
|
| 264 |
+
|
| 265 |
+
print(f"Processing {len(bboxes)} boxes for segmentation")
|
| 266 |
+
|
| 267 |
+
masks_list = []
|
| 268 |
+
confidences_list = []
|
| 269 |
+
|
| 270 |
+
for i, bbox in enumerate(bboxes):
|
| 271 |
+
# Handle both array format [x1,y1,x2,y2] and object format {x1,y1,x2,y2}
|
| 272 |
+
if isinstance(bbox, dict):
|
| 273 |
+
box = np.array([
|
| 274 |
+
bbox.get('x1', 0),
|
| 275 |
+
bbox.get('y1', 0),
|
| 276 |
+
bbox.get('x2', 0),
|
| 277 |
+
bbox.get('y2', 0)
|
| 278 |
+
])
|
| 279 |
+
else:
|
| 280 |
+
box = np.array(bbox)
|
| 281 |
+
|
| 282 |
+
print(f"Processing box {i+1}/{len(bboxes)}: {box.tolist()}")
|
| 283 |
+
|
| 284 |
+
# Run prediction with box
|
| 285 |
+
masks, scores, logits = predictor.predict(
|
| 286 |
+
point_coords=None,
|
| 287 |
+
point_labels=None,
|
| 288 |
+
box=box,
|
| 289 |
+
multimask_output=False
|
| 290 |
+
)
|
| 291 |
+
|
| 292 |
+
if len(masks) > 0:
|
| 293 |
+
best_idx = np.argmax(scores)
|
| 294 |
+
mask = masks[best_idx]
|
| 295 |
+
score = float(scores[best_idx])
|
| 296 |
+
|
| 297 |
+
masks_list.append({
|
| 298 |
+
'mask': mask.astype(np.uint8).tolist(),
|
| 299 |
+
'confidence': score
|
| 300 |
+
})
|
| 301 |
+
confidences_list.append(score)
|
| 302 |
+
print(f"Box {i+1} segmentation successful, confidence: {score:.4f}")
|
| 303 |
+
else:
|
| 304 |
+
print(f"Box {i+1} segmentation failed")
|
| 305 |
+
|
| 306 |
+
if masks_list:
|
| 307 |
+
result = {
|
| 308 |
+
'success': True,
|
| 309 |
+
'masks': masks_list,
|
| 310 |
+
'confidences': confidences_list,
|
| 311 |
+
'method': 'medsam_multiple_boxes'
|
| 312 |
+
}
|
| 313 |
+
else:
|
| 314 |
+
result = {'success': False, 'error': 'All segmentations failed'}
|
| 315 |
+
|
| 316 |
+
return json.dumps(result)
|
| 317 |
+
|
| 318 |
+
except Exception as e:
|
| 319 |
+
import traceback
|
| 320 |
+
return json.dumps({
|
| 321 |
+
'success': False,
|
| 322 |
+
'error': str(e),
|
| 323 |
+
'traceback': traceback.format_exc()
|
| 324 |
+
})
|
| 325 |
+
|
| 326 |
+
|
| 327 |
+
# =============================================================================
|
| 328 |
+
# LEGACY API FUNCTIONS (kept for backwards compatibility with test scripts)
|
| 329 |
+
# =============================================================================
|
| 330 |
+
|
| 331 |
+
def segment_with_points_legacy(image, points_json):
|
| 332 |
+
"""
|
| 333 |
+
Legacy API - Segment with point prompts using true point-based segmentation
|
| 334 |
+
|
| 335 |
+
Args:
|
| 336 |
+
points_json: JSON string with format:
|
| 337 |
+
{
|
| 338 |
+
"coords": [[x1, y1], [x2, y2], ...],
|
| 339 |
+
"labels": [1, 0, ...],
|
| 340 |
+
"multimask_output": true/false
|
| 341 |
+
}
|
| 342 |
+
"""
|
| 343 |
+
try:
|
| 344 |
points_data = json.loads(points_json)
|
| 345 |
coords = np.array(points_data["coords"])
|
| 346 |
labels = np.array(points_data["labels"])
|
| 347 |
multimask_output = points_data.get("multimask_output", True)
|
| 348 |
|
|
|
|
| 349 |
image_array = np.array(image)
|
|
|
|
|
|
|
| 350 |
predictor.set_image(image_array)
|
| 351 |
|
|
|
|
| 352 |
masks, scores, logits = predictor.predict(
|
| 353 |
point_coords=coords,
|
| 354 |
point_labels=labels,
|
| 355 |
multimask_output=multimask_output
|
| 356 |
)
|
| 357 |
|
|
|
|
| 358 |
masks_list = []
|
| 359 |
scores_list = []
|
| 360 |
|
| 361 |
for i, (mask, score) in enumerate(zip(masks, scores)):
|
|
|
|
| 362 |
mask_uint8 = (mask * 255).astype(np.uint8)
|
|
|
|
|
|
|
| 363 |
mask_image = Image.fromarray(mask_uint8)
|
| 364 |
buffer = io.BytesIO()
|
| 365 |
mask_image.save(buffer, format='PNG')
|
|
|
|
| 368 |
masks_list.append({
|
| 369 |
'mask_base64': mask_base64,
|
| 370 |
'mask_shape': mask.shape,
|
| 371 |
+
'mask_data': mask.tolist()
|
| 372 |
})
|
| 373 |
scores_list.append(float(score))
|
| 374 |
|
| 375 |
+
return json.dumps({
|
| 376 |
'success': True,
|
| 377 |
'masks': masks_list,
|
| 378 |
'scores': scores_list,
|
| 379 |
'num_masks': len(masks_list)
|
| 380 |
+
})
|
|
|
|
|
|
|
| 381 |
|
| 382 |
except Exception as e:
|
| 383 |
+
return json.dumps({'success': False, 'error': str(e)})
|
|
|
|
|
|
|
|
|
|
|
|
|
| 384 |
|
| 385 |
|
| 386 |
+
def segment_with_box_legacy(image, box_json):
|
| 387 |
"""
|
| 388 |
+
Legacy API - Segment with box prompt
|
| 389 |
|
| 390 |
Args:
|
|
|
|
| 391 |
box_json: JSON string with format:
|
| 392 |
+
{"box": [x1, y1, x2, y2], "multimask_output": false}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 393 |
"""
|
| 394 |
try:
|
|
|
|
| 395 |
box_data = json.loads(box_json)
|
| 396 |
+
box = np.array(box_data["box"])
|
| 397 |
+
multimask_output = box_data.get("multimask_output", False)
|
| 398 |
|
|
|
|
| 399 |
image_array = np.array(image)
|
|
|
|
|
|
|
| 400 |
predictor.set_image(image_array)
|
| 401 |
|
|
|
|
| 402 |
masks, scores, logits = predictor.predict(
|
| 403 |
point_coords=None,
|
| 404 |
point_labels=None,
|
|
|
|
| 406 |
multimask_output=multimask_output
|
| 407 |
)
|
| 408 |
|
|
|
|
| 409 |
masks_list = []
|
| 410 |
scores_list = []
|
| 411 |
|
| 412 |
for i, (mask, score) in enumerate(zip(masks, scores)):
|
|
|
|
| 413 |
mask_uint8 = (mask * 255).astype(np.uint8)
|
|
|
|
|
|
|
| 414 |
mask_image = Image.fromarray(mask_uint8)
|
| 415 |
buffer = io.BytesIO()
|
| 416 |
mask_image.save(buffer, format='PNG')
|
|
|
|
| 423 |
})
|
| 424 |
scores_list.append(float(score))
|
| 425 |
|
| 426 |
+
return json.dumps({
|
| 427 |
'success': True,
|
| 428 |
'masks': masks_list,
|
| 429 |
'scores': scores_list,
|
| 430 |
'num_masks': len(masks_list),
|
| 431 |
'box': box.tolist()
|
| 432 |
+
})
|
|
|
|
|
|
|
| 433 |
|
| 434 |
except Exception as e:
|
| 435 |
import traceback
|
| 436 |
+
return json.dumps({
|
| 437 |
'success': False,
|
| 438 |
'error': str(e),
|
| 439 |
'traceback': traceback.format_exc()
|
| 440 |
+
})
|
|
|
|
| 441 |
|
| 442 |
|
| 443 |
def segment_simple(image, x, y, label=1, multimask=True):
|
| 444 |
+
"""Simple single-point segmentation for Gradio UI"""
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 445 |
try:
|
| 446 |
points_json = json.dumps({
|
| 447 |
"coords": [[int(x), int(y)]],
|
|
|
|
| 449 |
"multimask_output": multimask
|
| 450 |
})
|
| 451 |
|
| 452 |
+
result_json = segment_with_points_legacy(image, points_json)
|
| 453 |
result = json.loads(result_json)
|
| 454 |
|
| 455 |
if not result['success']:
|
| 456 |
return None, f"Error: {result['error']}"
|
| 457 |
|
|
|
|
| 458 |
best_idx = np.argmax(result['scores'])
|
| 459 |
best_mask_base64 = result['masks'][best_idx]['mask_base64']
|
| 460 |
best_score = result['scores'][best_idx]
|
| 461 |
|
|
|
|
| 462 |
mask_bytes = base64.b64decode(best_mask_base64)
|
| 463 |
mask_image = Image.open(io.BytesIO(mask_bytes))
|
| 464 |
|
|
|
|
| 468 |
return None, f"Error: {str(e)}"
|
| 469 |
|
| 470 |
|
| 471 |
+
# =============================================================================
|
| 472 |
+
# GRADIO INTERFACE
|
| 473 |
+
# =============================================================================
|
| 474 |
+
|
| 475 |
with gr.Blocks(title="MedSAM Inference API") as demo:
|
| 476 |
gr.Markdown("# 🏥 MedSAM Inference API")
|
| 477 |
+
gr.Markdown("Point and box-based segmentation using Fine-Tuned MedSAM")
|
| 478 |
+
gr.Markdown("**API-compatible with Dense-Captioning-Toolkit backend**")
|
| 479 |
|
| 480 |
with gr.Tabs():
|
| 481 |
+
# Tab 1: Backend-Compatible API (Points)
|
| 482 |
+
with gr.Tab("Segment Points (Backend API)"):
|
| 483 |
gr.Markdown("""
|
| 484 |
+
## Point-based Segmentation - Backend Compatible
|
| 485 |
+
|
| 486 |
+
**Matches `/api/medsam/segment_points`**
|
| 487 |
+
|
| 488 |
+
Each point is converted to a small bounding box for segmentation.
|
| 489 |
|
| 490 |
**Input Format:**
|
| 491 |
```json
|
| 492 |
{
|
| 493 |
+
"points": [[x1, y1], [x2, y2], ...],
|
| 494 |
+
"labels": [1, 0, ...]
|
|
|
|
| 495 |
}
|
| 496 |
```
|
| 497 |
|
| 498 |
+
**Output Format (matches backend):**
|
| 499 |
```json
|
| 500 |
{
|
| 501 |
"success": true,
|
| 502 |
+
"masks": [{"mask": [[...]], "confidence": 0.95}, ...],
|
| 503 |
+
"confidences": [0.95, ...],
|
| 504 |
+
"method": "medsam_points_individual"
|
| 505 |
}
|
| 506 |
```
|
| 507 |
""")
|
| 508 |
|
| 509 |
with gr.Row():
|
| 510 |
with gr.Column():
|
| 511 |
+
points_image = gr.Image(type="pil", label="Input Image")
|
| 512 |
+
points_json_input = gr.Textbox(
|
| 513 |
+
label="Request JSON",
|
| 514 |
+
placeholder='{"points": [[100, 150], [200, 200]], "labels": [1, 1]}',
|
| 515 |
lines=3
|
| 516 |
)
|
| 517 |
+
points_button = gr.Button("Segment Points", variant="primary")
|
| 518 |
|
| 519 |
with gr.Column():
|
| 520 |
+
points_output = gr.Textbox(label="Result JSON", lines=15)
|
| 521 |
|
| 522 |
+
points_button.click(
|
| 523 |
+
fn=segment_points,
|
| 524 |
+
inputs=[points_image, points_json_input],
|
| 525 |
+
outputs=points_output,
|
| 526 |
+
api_name="segment_points"
|
| 527 |
)
|
| 528 |
+
|
| 529 |
+
# Tab 2: Backend-Compatible API (Multiple Boxes)
|
| 530 |
+
with gr.Tab("Segment Multiple Boxes (Backend API)"):
|
| 531 |
+
gr.Markdown("""
|
| 532 |
+
## Multiple Box Segmentation - Backend Compatible
|
| 533 |
+
|
| 534 |
+
**Matches `/api/medsam/segment_multiple_boxes`** (main frontend API)
|
| 535 |
+
|
| 536 |
+
**Input Format:**
|
| 537 |
+
```json
|
| 538 |
+
{
|
| 539 |
+
"bboxes": [
|
| 540 |
+
[x1, y1, x2, y2],
|
| 541 |
+
{"x1": 10, "y1": 20, "x2": 100, "y2": 200}
|
| 542 |
+
]
|
| 543 |
+
}
|
| 544 |
+
```
|
| 545 |
+
|
| 546 |
+
**Output Format (matches backend):**
|
| 547 |
+
```json
|
| 548 |
+
{
|
| 549 |
+
"success": true,
|
| 550 |
+
"masks": [{"mask": [[...]], "confidence": 0.95}, ...],
|
| 551 |
+
"confidences": [0.95, ...],
|
| 552 |
+
"method": "medsam_multiple_boxes"
|
| 553 |
+
}
|
| 554 |
+
```
|
| 555 |
+
""")
|
| 556 |
+
|
| 557 |
+
with gr.Row():
|
| 558 |
+
with gr.Column():
|
| 559 |
+
multi_box_image = gr.Image(type="pil", label="Input Image")
|
| 560 |
+
multi_box_json = gr.Textbox(
|
| 561 |
+
label="Request JSON",
|
| 562 |
+
placeholder='{"bboxes": [[100, 100, 300, 300], [400, 400, 600, 600]]}',
|
| 563 |
+
lines=3
|
| 564 |
+
)
|
| 565 |
+
multi_box_button = gr.Button("Segment Multiple Boxes", variant="primary")
|
| 566 |
+
|
| 567 |
+
with gr.Column():
|
| 568 |
+
multi_box_output = gr.Textbox(label="Result JSON", lines=15)
|
| 569 |
|
| 570 |
+
multi_box_button.click(
|
| 571 |
+
fn=segment_multiple_boxes,
|
| 572 |
+
inputs=[multi_box_image, multi_box_json],
|
| 573 |
+
outputs=multi_box_output,
|
| 574 |
+
api_name="segment_multiple_boxes"
|
|
|
|
|
|
|
|
|
|
|
|
|
| 575 |
)
|
| 576 |
|
| 577 |
+
# Tab 3: Backend-Compatible API (Single Box)
|
| 578 |
+
with gr.Tab("Segment Box (Backend API)"):
|
| 579 |
gr.Markdown("""
|
| 580 |
+
## Single Box Segmentation - Backend Compatible
|
| 581 |
|
| 582 |
+
**Matches `/api/medsam/segment_box`**
|
| 583 |
|
| 584 |
**Input Format:**
|
| 585 |
```json
|
| 586 |
{
|
| 587 |
+
"bbox": [x1, y1, x2, y2]
|
| 588 |
+
}
|
| 589 |
+
```
|
| 590 |
+
|
| 591 |
+
**Output Format (matches backend):**
|
| 592 |
+
```json
|
| 593 |
+
{
|
| 594 |
+
"success": true,
|
| 595 |
+
"mask": [[...]],
|
| 596 |
+
"confidence": 0.95,
|
| 597 |
+
"method": "medsam_box"
|
| 598 |
}
|
| 599 |
```
|
|
|
|
| 600 |
""")
|
| 601 |
|
| 602 |
with gr.Row():
|
| 603 |
with gr.Column():
|
| 604 |
box_image = gr.Image(type="pil", label="Input Image")
|
| 605 |
+
box_json_input = gr.Textbox(
|
| 606 |
+
label="Request JSON",
|
| 607 |
+
placeholder='{"bbox": [100, 100, 300, 300]}',
|
| 608 |
lines=3
|
| 609 |
)
|
| 610 |
+
box_button = gr.Button("Segment Box", variant="primary")
|
| 611 |
|
| 612 |
with gr.Column():
|
| 613 |
box_output = gr.Textbox(label="Result JSON", lines=15)
|
| 614 |
|
| 615 |
box_button.click(
|
| 616 |
+
fn=segment_box,
|
| 617 |
+
inputs=[box_image, box_json_input],
|
| 618 |
+
outputs=box_output,
|
| 619 |
+
api_name="segment_box"
|
| 620 |
+
)
|
| 621 |
+
|
| 622 |
+
# Tab 4: Legacy API (for test scripts)
|
| 623 |
+
with gr.Tab("Legacy API"):
|
| 624 |
+
gr.Markdown("""
|
| 625 |
+
## Legacy API (for backwards compatibility)
|
| 626 |
+
|
| 627 |
+
Original API format with `coords`, `mask_data`, `scores`, etc.
|
| 628 |
+
Use if you have existing scripts using the old format.
|
| 629 |
+
""")
|
| 630 |
+
|
| 631 |
+
with gr.Row():
|
| 632 |
+
with gr.Column():
|
| 633 |
+
legacy_image = gr.Image(type="pil", label="Input Image")
|
| 634 |
+
legacy_points = gr.Textbox(
|
| 635 |
+
label="Points JSON (Legacy Format)",
|
| 636 |
+
placeholder='{"coords": [[100, 150]], "labels": [1], "multimask_output": true}',
|
| 637 |
+
lines=3
|
| 638 |
+
)
|
| 639 |
+
legacy_button = gr.Button("Run Segmentation (Legacy)", variant="secondary")
|
| 640 |
+
|
| 641 |
+
with gr.Column():
|
| 642 |
+
legacy_output = gr.Textbox(label="Result JSON", lines=15)
|
| 643 |
+
|
| 644 |
+
legacy_button.click(
|
| 645 |
+
fn=segment_with_points_legacy,
|
| 646 |
+
inputs=[legacy_image, legacy_points],
|
| 647 |
+
outputs=legacy_output,
|
| 648 |
+
api_name="segment_with_points" # Keep old API name for compatibility
|
| 649 |
)
|
| 650 |
|
| 651 |
+
gr.Markdown("---")
|
| 652 |
+
|
| 653 |
+
with gr.Row():
|
| 654 |
+
with gr.Column():
|
| 655 |
+
legacy_box_image = gr.Image(type="pil", label="Input Image")
|
| 656 |
+
legacy_box_json = gr.Textbox(
|
| 657 |
+
label="Box JSON (Legacy Format)",
|
| 658 |
+
placeholder='{"box": [100, 100, 300, 300], "multimask_output": false}',
|
| 659 |
+
lines=3
|
| 660 |
+
)
|
| 661 |
+
legacy_box_button = gr.Button("Run Box Segmentation (Legacy)", variant="secondary")
|
| 662 |
+
|
| 663 |
+
with gr.Column():
|
| 664 |
+
legacy_box_output = gr.Textbox(label="Result JSON", lines=15)
|
| 665 |
+
|
| 666 |
+
legacy_box_button.click(
|
| 667 |
+
fn=segment_with_box_legacy,
|
| 668 |
+
inputs=[legacy_box_image, legacy_box_json],
|
| 669 |
+
outputs=legacy_box_output,
|
| 670 |
+
api_name="segment_with_box" # Keep old API name for compatibility
|
| 671 |
)
|
| 672 |
|
| 673 |
+
# Tab 5: Simple UI Interface
|
| 674 |
with gr.Tab("Simple Interface"):
|
| 675 |
gr.Markdown("## Click-based Segmentation")
|
| 676 |
gr.Markdown("Enter X, Y coordinates to segment")
|
|
|
|
| 705 |
|
| 706 |
gr.Markdown("""
|
| 707 |
---
|
| 708 |
+
### 📡 API Usage from Python (Backend-Compatible)
|
| 709 |
|
| 710 |
```python
|
| 711 |
+
from gradio_client import Client, handle_file
|
| 712 |
import json
|
|
|
|
|
|
|
| 713 |
|
| 714 |
+
client = Client("Aniketg6/medsam-inference")
|
|
|
|
| 715 |
|
| 716 |
+
# Point-based segmentation (matches backend format)
|
| 717 |
+
result = client.predict(
|
| 718 |
+
image=handle_file("image.jpg"),
|
| 719 |
+
request_json=json.dumps({
|
| 720 |
+
"points": [[150, 200], [300, 400]],
|
| 721 |
+
"labels": [1, 1]
|
| 722 |
+
}),
|
| 723 |
+
api_name="/segment_points"
|
| 724 |
+
)
|
|
|
|
| 725 |
|
| 726 |
+
# Multiple box segmentation (main frontend API)
|
| 727 |
+
result = client.predict(
|
| 728 |
+
image=handle_file("image.jpg"),
|
| 729 |
+
request_json=json.dumps({
|
| 730 |
+
"bboxes": [[100, 100, 300, 300], [400, 400, 600, 600]]
|
| 731 |
+
}),
|
| 732 |
+
api_name="/segment_multiple_boxes"
|
|
|
|
|
|
|
| 733 |
)
|
| 734 |
|
| 735 |
+
# Parse response
|
| 736 |
+
data = json.loads(result)
|
| 737 |
+
print(f"Success: {data['success']}")
|
| 738 |
+
print(f"Masks: {len(data['masks'])}")
|
| 739 |
+
print(f"Confidences: {data['confidences']}")
|
| 740 |
+
print(f"Method: {data['method']}")
|
| 741 |
```
|
| 742 |
""")
|
| 743 |
|
|
|
|
| 747 |
server_name="0.0.0.0",
|
| 748 |
server_port=7860,
|
| 749 |
share=False,
|
| 750 |
+
show_error=True
|
| 751 |
)
|