Spaces:
Sleeping
Sleeping
first
Browse files- .gitignore +1 -0
- Dockerfile +30 -0
- README.md +5 -4
- model.py +228 -0
- requirements.txt +7 -0
.gitignore
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.secrets
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Dockerfile
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FROM python:3.9-slim
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WORKDIR /home/app
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# Installation des dépendances système
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RUN apt-get update && apt-get install -y \
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build-essential \
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libpq-dev \
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git \
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&& rm -rf /var/lib/apt/lists/*
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# Installation des dépendances Python
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COPY requirements.txt requirements.txt
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RUN pip install -r requirements.txt
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# Exposition du port MLflow
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EXPOSE 5000
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# Définir les variables d'environnement pour AWS et MLflow
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ENV AWS_ACCESS_KEY_ID=$AWS_ACCESS_KEY_ID
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ENV AWS_SECRET_ACCESS_KEY=$AWS_SECRET_ACCESS_KEY
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ENV BACKEND_STORE_URI=$BACKEND_STORE_URI
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ENV MLFLOW_DEFAULT_ARTIFACT_ROOT=$MLFLOW_DEFAULT_ARTIFACT_ROOT
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# Commande pour démarrer le serveur MLflow
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CMD mlflow server -p $PORT \
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--host 0.0.0.0 \
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--backend-store-uri $BACKEND_STORE_URI \
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--default-artifact-root $MLFLOW_DEFAULT_ARTIFACT_ROOT
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README.md
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---
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title: Mlflow
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emoji:
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colorFrom:
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colorTo:
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sdk: docker
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pinned: false
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---
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Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
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---
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title: Mlflow Get
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emoji: 🏃
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colorFrom: pink
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colorTo: blue
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sdk: docker
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pinned: false
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license: apache-2.0
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---
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Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
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model.py
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import pandas as pd
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import plotly.express as px
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import matplotlib.pyplot as plt
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import plotly.io as pio
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import sklearn
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import warnings
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from scipy.special import expit, logit
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import sksurv.datasets
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import numpy as np
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import joblib
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import xgboost as xgb
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from xgboost import XGBRegressor
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from xgboost import XGBClassifier
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from xgboost import DMatrix
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from xgboost import train
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from lifelines import CoxPHFitter
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from itertools import product
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from tqdm import tqdm
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from xgbse import XGBSEKaplanNeighbors
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from xgbse.converters import convert_to_structured
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from sklearn.metrics import roc_auc_score
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from sklearn.preprocessing import StandardScaler
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from sklearn.impute import SimpleImputer
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from sklearn.pipeline import Pipeline
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from sklearn.model_selection import train_test_split
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from sklearn.ensemble import RandomForestClassifier
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from sklearn.metrics import classification_report, confusion_matrix, accuracy_score
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from sklearn.exceptions import UndefinedMetricWarning
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from sklearn import set_config
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from sklearn.model_selection import GridSearchCV, KFold
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from sklearn.pipeline import make_pipeline
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from sklearn.model_selection import ParameterGrid
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from sksurv.datasets import load_breast_cancer
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from sksurv.metrics import cumulative_dynamic_auc
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from sksurv.metrics import concordance_index_censored
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from sksurv.linear_model import CoxnetSurvivalAnalysis, CoxPHSurvivalAnalysis
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from sksurv.preprocessing import OneHotEncoder
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from sksurv.util import Surv
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from dotenv import load_dotenv
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import boto3
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import mlflow
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import os
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import io
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from sksurv.ensemble import GradientBoostingSurvivalAnalysis
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load_dotenv(dotenv_path=".secrets")
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mlflow.set_tracking_uri(os.getenv('BACKEND_STORE_URI=postgresql+psycopg2://neondb_owner:npg_GZ5FuPYjaf3b@ep-fancy-lab-adrdogpa-pooler.c-2.us-east-1.aws.neon.tech/neondb?sslmode=require&channel_binding=require'))
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os.environ['AWS_ACCESS_KEY_ID'] = os.getenv('AWS_ACCESS_KEY_ID')
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os.environ['AWS_SECRET_ACCESS_KEY'] = os.getenv('AWS_SECRET_ACCESS_KEY')
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os.environ['MLFLOW_DEFAULT_ARTIFACT_ROOT'] = os.getenv('MLFLOW_DEFAULT_ARTIFACT_ROOT')
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os.environ['S3_BUCKET'] = os.getenv('S3_BUCKET')
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# Log configurations au démarrage
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print("=== Configuration MLflow ===")
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print(f"Tracking URI: {mlflow.get_tracking_uri()}")
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print(f"Artifact Store: {os.getenv('MLFLOW_DEFAULT_ARTIFACT_ROOT')}")
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print(f"AWS Access: {'Configuré' if os.getenv('AWS_ACCESS_KEY_ID') else 'Manquant'}")
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s3 = boto3.client('s3')
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try:
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response = s3.list_objects_v2(Bucket=os.getenv('S3_BUCKET'))
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print("S3 contents:", response.get('Contents', []))
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except Exception as e:
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print("S3 error:", e)
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warnings.filterwarnings("ignore", category=UndefinedMetricWarning)
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set_config(display="text")
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df=pd.read_csv('https://projet-feux-fullstack.s3.eu-west-3.amazonaws.com/datas/dataset_modele_decompte2.csv', sep=';', low_memory=False)
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mask = df.Année == 2025
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df = df[~mask]
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df['Feu prévu'] = df['Feu prévu'].astype(bool)
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df_clean = df.copy()
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features = [
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'moyenne precipitations mois', 'moyenne temperature mois',
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'moyenne evapotranspiration mois', 'moyenne vitesse vent année',
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'moyenne vitesse vent mois', 'moyenne temperature année',
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'RR', 'UM', 'ETPMON', 'TN', 'TX', 'Nombre de feu par an',
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'Nombre de feu par mois', 'jours_sans_pluie', 'jours_TX_sup_30',
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'ETPGRILLE_7j',
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'compteur jours vers prochain feu','compteur feu log','Année', 'Mois',
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'moyenne precipitations année', 'moyenne evapotranspiration année'
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]
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features = [f for f in features if f in df_clean.columns]
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# Nous mettons à 0 les NAN de la colonne décompte
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df_clean["décompte"] = df_clean["décompte"].fillna(0)
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# 🔹 Préparation des données réelles
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df_clean = df_clean.rename(columns={"Feu prévu": "event", "décompte": "duration"})
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y_structured = Surv.from_dataframe("event", "duration", df_clean)
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X = df_clean[features]
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y = y_structured
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X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.3, random_state=42)
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event_train = y_train["event"]
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duration_train = y_train["duration"]
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event_test = y_test["event"]
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duration_test = y_test["duration"]
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# 🔹 Pipeline XGBoost survie avec StandardScaler
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pipeline = Pipeline([
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("imputer", SimpleImputer(strategy="median")),
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("scaler", StandardScaler()),
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("xgb", XGBRegressor(
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objective="survival:cox",
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n_estimators=100,
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learning_rate=0.05,
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max_depth=3,
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tree_method="hist",
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device="cuda",
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random_state=42
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))
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])
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def train_evaluate_model_with_mlflow(model, X_train, X_test, y_train, y_test, model_name):
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print(f"\n=== Démarrage entraînement {model_name} ===")
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print(f"Tracking URI: {mlflow.get_tracking_uri()}")
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print(f"Registry URI: {mlflow.get_registry_uri()}")
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mlflow.set_experiment("fire_survival")
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print(f"Experiment: fire_survival")
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s3 = boto3.client('s3')
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with mlflow.start_run() as run:
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print(f"Run ID: {run.info.run_id}")
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print("Entraînement du modèle...")
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model.fit(X_train, duration_train, xgb__sample_weight=event_train)
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#save model to S3
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print("Enregistrement du modèle sur S3...")
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model_path = f"mlflow/models/{model_name}_{run.info.run_id}.joblib"
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# mlflow.sklearn.log_model(model, "model")
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buffer = io.BytesIO()
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joblib.dump(model, buffer)
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s3.put_object(
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Bucket=os.getenv('S3_BUCKET'),
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Key=model_path,
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Body=buffer.getvalue()
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)
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print("Modèle enregistré")
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| 155 |
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| 156 |
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# 🔹 Prédictions réelles (log(HR)) sur données test
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| 157 |
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log_hr_test = model.predict(X_test)
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| 158 |
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| 159 |
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# 🔹 Jeu factice pour estimer le modèle de Cox
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| 160 |
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df_fake = pd.DataFrame({
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"duration": duration_train,
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"event": event_train,
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"const": 1
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})
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dtrain_fake = DMatrix(df_fake[["const"]])
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| 166 |
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dtrain_fake.set_float_info("label", df_fake["duration"])
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dtrain_fake.set_float_info("label_lower_bound", df_fake["duration"])
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dtrain_fake.set_float_info("label_upper_bound", df_fake["duration"])
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dtrain_fake.set_float_info("weight", df_fake["event"])
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params = {
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| 172 |
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"objective": "survival:cox",
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| 173 |
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"eval_metric": "cox-nloglik",
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"learning_rate": 0.1,
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"max_depth": 1,
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"verbosity": 0
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}
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| 178 |
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bst_fake = train(params, dtrain_fake, num_boost_round=100)
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| 179 |
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| 180 |
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log_hr_fake = bst_fake.predict(dtrain_fake)
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df_risque = pd.DataFrame({
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"duration": duration_train,
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"event": event_train,
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"log_risque": log_hr_fake
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})
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# insertion de bruit pour aider le modèle à converger
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df_risque["log_risque"] += np.random.normal(0, 1e-4, size=len(df_risque))
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| 188 |
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# 🔹 Modèle de Cox factice
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| 190 |
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cph = CoxPHFitter()
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| 191 |
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cph.fit(df_risque, duration_col="duration", event_col="event", show_progress=False)
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| 192 |
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# 🔹 Évaluation avec le c-index
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| 194 |
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c_index = concordance_index_censored(event_test, duration_test, log_hr_test)[0]
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| 195 |
+
print(f"\nC-index (test) : {c_index:.3f}")
|
| 196 |
+
|
| 197 |
+
|
| 198 |
+
print("\nEnregistrement des métriques...")
|
| 199 |
+
mlflow.log_metric("c_index", c_index)
|
| 200 |
+
|
| 201 |
+
|
| 202 |
+
# mlflow.register_model(
|
| 203 |
+
# f"runs:/{run.info.run_id}/model",
|
| 204 |
+
# "fire_survival"
|
| 205 |
+
# )
|
| 206 |
+
# Exemple : une ligne de ton jeu de données
|
| 207 |
+
input_example = X_train.iloc[:1]
|
| 208 |
+
mlflow.sklearn.log_model(
|
| 209 |
+
sk_model=model,
|
| 210 |
+
artifact_path="model",
|
| 211 |
+
input_example=input_example
|
| 212 |
+
)
|
| 213 |
+
|
| 214 |
+
# 🔹 Enregistrer dans le Registry
|
| 215 |
+
result = mlflow.register_model(
|
| 216 |
+
model_uri=f"runs:/{run.info.run_id}/model",
|
| 217 |
+
name="fire_survival"
|
| 218 |
+
)
|
| 219 |
+
return model, run.info.run_id
|
| 220 |
+
|
| 221 |
+
if __name__ == "__main__":
|
| 222 |
+
xgb_final = pipeline
|
| 223 |
+
_, run_id = train_evaluate_model_with_mlflow(
|
| 224 |
+
xgb_final, X_train, X_test, y_train, y_test, "xgboost_survivalCOX_model"
|
| 225 |
+
)
|
| 226 |
+
print(f"Run ID: {run_id}")
|
| 227 |
+
|
| 228 |
+
|
requirements.txt
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
mlflow==2.15.0
|
| 2 |
+
psycopg2-binary
|
| 3 |
+
boto3
|
| 4 |
+
sqlalchemy
|
| 5 |
+
scikit-learn
|
| 6 |
+
pandas
|
| 7 |
+
numpy
|