# Project Structure

This document describes the organized structure of the Medical Assistant with Spiritual Support project after the prompt optimization implementation.

## 📁 Directory Structure

```
├── src/                                    # Source code
│   ├── config/                            # Configuration and prompt management
│   │   ├── prompt_management/             # NEW: Centralized prompt system
│   │   │   ├── data/                      # Shared component data (JSON)
│   │   │   ├── prompt_controller.py       # Central prompt orchestrator
│   │   │   ├── shared_components.py       # Indicator/Rules/Template catalogs
│   │   │   └── data_models.py            # Data structures
│   │   └── prompts/                       # Prompt text files
│   ├── core/                              # Core business logic
│   └── interface/                         # User interfaces
│       ├── simplified_gradio_app.py       # Main application
│       └── enhanced_prompt_editor.py      # NEW: Enhanced prompt editing UI
│
├── tests/                                 # Organized test structure
│   ├── prompt_optimization/               # NEW: Prompt system tests
│   │   ├── test_enhanced_prompt_editor.py
│   │   ├── test_prompt_controller.py
│   │   ├── test_session_prompt_*.py
│   │   └── test_*_catalog.py
│   ├── integration/                       # End-to-end integration tests
│   │   ├── test_task_*_complete.py
│   │   └── test_integration.py
│   ├── unit/                             # Component unit tests
│   │   ├── test_*_manager.py
│   │   ├── test_*_classifier.py
│   │   └── test_*_system.py
│   ├── verification_mode/                # Verification system tests
│   └── chaplain_feedback/                # Chaplain feedback tests
│
├── scripts/                              # NEW: Utility scripts
│   ├── cleanup_test_data.py              # Data cleanup utilities
│   ├── update_*.py                       # System update scripts
│   └── simple_test.py                    # Quick testing
│
├── .kiro/                                # Kiro IDE configuration
│   └── specs/                            # Project specifications
│       └── prompt-optimization/          # Prompt optimization spec
│
└── [Root Files]
    ├── app.py                            # Main application entry point
    ├── run.sh                            # Launch script
    ├── run_tests.py                      # NEW: Organized test runner
    └── requirements.txt                  # Dependencies
```

## 🎯 Key Features Implemented

### 1. **Centralized Prompt Management**
- **PromptController**: Central orchestrator for all prompt operations
- **Shared Components**: Indicators, rules, templates stored centrally
- **Session Overrides**: Temporary prompt modifications for testing
- **Priority System**: Session → Centralized → Default fallbacks

### 2. **Enhanced Edit Prompts Interface**
- **Real-time editing** with session isolation
- **Validation system** with CSS-optimized display
- **Promote to File** workflow with automatic backups
- **Visual indicators** for prompt sources (session vs centralized)

### 3. **Organized Test Structure**
- **Prompt Optimization Tests**: 9 test files covering all prompt system functionality
- **Integration Tests**: 8 test files for end-to-end workflows
- **Unit Tests**: 16 test files for individual components
- **Proper imports** and path handling for moved files

### 4. **Data Management**
- **Clean shared components** (no test data pollution)
- **JSON-based storage** for indicators, rules, templates
- **Automatic cleanup** scripts and procedures

## 🚀 Usage

### Running the Application
```bash
# Recommended method
./run.sh

# Alternative
python app.py
```

### Running Tests
```bash
# All tests with organized output
python run_tests.py

# Specific test suites
python -m pytest tests/prompt_optimization/ -v
python -m pytest tests/integration/ -v
python -m pytest tests/unit/ -v
```

### Utility Scripts
```bash
# Clean test data from shared components
python scripts/cleanup_test_data.py

# Quick functionality test
python scripts/simple_test.py
```

## 📊 Test Coverage

- **Prompt Optimization**: 60+ tests covering all new functionality
- **Integration**: 38+ tests for complete workflows
- **Unit Tests**: 50+ tests for individual components
- **Property-based**: Hypothesis testing for correctness guarantees

## 🔧 Development Workflow

1. **Edit Prompts**: Use the "🔧 Edit Prompts" tab for real-time testing
2. **Session Testing**: Make changes that apply only to your session
3. **Validation**: Use built-in validation before applying changes
4. **Promotion**: Promote tested changes to permanent files
5. **Testing**: Run organized test suites to verify functionality

## 📝 Recent Improvements

- ✅ **Organized file structure** with logical groupings
- ✅ **Fixed import paths** for all moved test files
- ✅ **CSS-optimized validation** display (no more UI overflow)
- ✅ **Clean shared components** (removed test data pollution)
- ✅ **Comprehensive documentation** and README files
- ✅ **Utility scripts** for maintenance and cleanup

## 🎉 Ready for Production

The system is now fully organized, tested, and ready for production use with:
- Clean, maintainable code structure
- Comprehensive test coverage
- User-friendly prompt editing interface
- Robust data management
- Clear documentation and workflows