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SRH Pathology Validation Study - expert annotation app (Gradio / Hugging Face Space).
Design goal (strict): judging one case requires ZERO scrolling and ZERO guessing about what controls mean.
Every scale legend and subjective definition is printed on-screen next to the control that uses it, and every
image carries its own zoom / brightness / contrast strip directly beneath it.
Two arms (one grading unit per screen; order randomized per reader; blinded to source):
ARM A - Realism & memorization: ONE SRH patch; judge Real vs AI-generated, confidence, looks-copied,
clinical plausibility.
ARM B - Discovered-category meaningfulness: a compact grid of patches the model grouped as ONE discovered
category; judge whether it is a coherent, clinically meaningful morphology (+ optional description).
Credentials: simple first-login logins (e.g. Pathologist_1 / Path1234@) that the reader can CHANGE after first
login (username and/or password) from an on-screen Settings panel; changing the username migrates saved work.
Robust storage: every answer is keyed by (annotator, case_id, item_id, dimension) in an append-only JSONL in a
private dataset, so later UI/wording changes can never invalidate or overwrite prior annotations.
Config via env / HF Space secrets:
HF_TOKEN : write token for the private response/account dataset.
RESPONSE_DATASET : private dataset repo id (default DrSyedFaizan/srh-reader-responses).
CASES_DATASET : private dataset holding cases.json + images (snapshot at boot).
READER_CREDENTIALS : JSON {"login_name": "login_password", ...} for first-time login only.
APP_SECRET : secret string signing resume tokens (defaults derived from HF_TOKEN).
"""
import os
import io
import json
import time
import base64
import random
import hashlib
import hmac
import secrets
from pathlib import Path
import gradio as gr
from PIL import Image
# ----------------------------------------------------------------------------- config
APP_DIR = Path(__file__).parent
DATA_DIR = APP_DIR / "data"
LOCAL_BACKUP_DIR = APP_DIR / "local_responses"
LOCAL_BACKUP_DIR.mkdir(exist_ok=True)
HF_TOKEN = os.environ.get("HF_TOKEN", "").strip()
RESPONSE_DATASET = os.environ.get("RESPONSE_DATASET", "DrSyedFaizan/srh-reader-responses").strip()
CASES_DATASET = os.environ.get("CASES_DATASET", "").strip()
APP_SECRET = os.environ.get("APP_SECRET", "").strip() or (
"srh-" + hashlib.sha256(HF_TOKEN.encode()).hexdigest()[:16] if HF_TOKEN else "srh-dev-secret")
DISPLAY_MAX_W = 700
ARMB_MAX_TILES = 9 # compact grid so an Arm-B case stays near a single viewport
SCHEMA_VERSION = 2
APP_BUILD = 3 # bumped 2026-07-08: 512px crisp images + resolution note. Analysis counts app_build>=3
# only (silently discards pre-fix, resolution-confounded ratings).
ACCOUNTS_PATH = "accounts/accounts.json"
try:
_invite = json.loads(os.environ.get("READER_CREDENTIALS", "").strip() or "{}")
except Exception:
_invite = {}
if not _invite:
_invite = {"Pathologist_1": "Path1234@", "Pathologist_2": "Path1234@", "Pathologist_3": "Path1234@"}
print("[WARN] READER_CREDENTIALS not set - using default simple logins. Set the secret before the real study.")
INVITES = {str(k): str(v) for k, v in _invite.items()}
# ----------------------------------------------------------------------------- HF api
try:
from huggingface_hub import HfApi
_api = HfApi(token=HF_TOKEN) if HF_TOKEN else None
except Exception as e:
_api = None
print(f"[WARN] huggingface_hub unavailable: {e}")
def _ensure_response_dataset():
if not _api:
return
try:
_api.create_repo(RESPONSE_DATASET, repo_type="dataset", private=True, exist_ok=True)
except Exception as e:
print(f"[WARN] could not ensure response dataset: {e}")
# ----------------------------------------------------------------------------- cases
def _maybe_pull_cases():
if not CASES_DATASET or not _api:
return
try:
from huggingface_hub import snapshot_download
snapshot_download(CASES_DATASET, repo_type="dataset", local_dir=str(DATA_DIR),
token=HF_TOKEN, local_dir_use_symlinks=False)
print(f"[info] pulled cases from {CASES_DATASET}")
except Exception as e:
print(f"[WARN] could not pull CASES_DATASET: {e}")
def load_cases():
_maybe_pull_cases()
cj = DATA_DIR / "cases.json"
if not cj.exists():
print("[WARN] no data/cases.json found.")
return []
with open(cj, "r", encoding="utf-8") as f:
return json.load(f).get("cases", [])
CASES = load_cases()
N_CASES = len(CASES)
CASES_BY_ID = {c["case_id"]: c for c in CASES}
_IMG_CACHE = {}
def img_data_uri(rel_path):
if not rel_path:
return ""
if rel_path in _IMG_CACHE:
return _IMG_CACHE[rel_path]
p = DATA_DIR / rel_path
try:
im = Image.open(p).convert("RGB")
if im.width > DISPLAY_MAX_W:
h = int(im.height * DISPLAY_MAX_W / im.width)
im = im.resize((DISPLAY_MAX_W, h))
buf = io.BytesIO()
im.save(buf, format="PNG")
uri = "data:image/png;base64," + base64.b64encode(buf.getvalue()).decode()
except Exception as e:
print(f"[WARN] image load failed {p}: {e}")
uri = ""
_IMG_CACHE[rel_path] = uri
return uri
# ----------------------------------------------------------------------------- tokens / passwords / accounts
def make_token(name):
return hmac.new(APP_SECRET.encode(), name.encode(), hashlib.sha256).hexdigest()
def valid_token(name, tok):
return bool(name) and bool(tok) and hmac.compare_digest(make_token(name), tok)
def hash_pw(pw, salt):
return hashlib.pbkdf2_hmac("sha256", pw.encode(), bytes.fromhex(salt), 100_000).hex()
def verify_pw(pw, rec):
try:
return hmac.compare_digest(hash_pw(pw, rec["salt"]), rec["hash"])
except Exception:
return False
def new_pw_record(pw, invite=""):
salt = secrets.token_hex(8)
return {"salt": salt, "hash": hash_pw(pw, salt), "invite": invite, "created_ts": int(time.time())}
def load_accounts():
default = {"accounts": {}, "claimed_invites": []}
if _api:
try:
from huggingface_hub import hf_hub_download
fp = hf_hub_download(RESPONSE_DATASET, ACCOUNTS_PATH, repo_type="dataset", token=HF_TOKEN)
with open(fp, "r", encoding="utf-8") as f:
d = json.load(f)
d.setdefault("accounts", {}); d.setdefault("claimed_invites", [])
return d
except Exception:
pass
lb = LOCAL_BACKUP_DIR / "accounts.json"
if lb.exists():
with open(lb, "r", encoding="utf-8") as f:
return json.load(f)
return default
def save_accounts(acc):
payload = json.dumps(acc, ensure_ascii=False, indent=2)
with open(LOCAL_BACKUP_DIR / "accounts.json", "w", encoding="utf-8") as f:
f.write(payload)
if _api:
try:
_api.upload_file(path_or_fileobj=payload.encode("utf-8"), path_in_repo=ACCOUNTS_PATH,
repo_id=RESPONSE_DATASET, repo_type="dataset", commit_message="update accounts")
except Exception as e:
print(f"[WARN] account upload failed (kept local): {e}")
# ----------------------------------------------------------------------------- storage
def _resp_path(annotator):
return f"responses/{annotator}.jsonl"
def load_existing_responses(annotator):
if _api:
try:
from huggingface_hub import hf_hub_download
fp = hf_hub_download(RESPONSE_DATASET, _resp_path(annotator), repo_type="dataset", token=HF_TOKEN)
with open(fp, "r", encoding="utf-8") as f:
return [json.loads(l) for l in f if l.strip()]
except Exception:
pass
lb = LOCAL_BACKUP_DIR / f"{annotator}.jsonl"
if lb.exists():
with open(lb, "r", encoding="utf-8") as f:
return [json.loads(l) for l in f if l.strip()]
return []
def completed_case_ids(records):
return {r["case_id"] for r in records if r.get("item_id") == "__case__"}
def _write_responses(annotator, records):
payload = "\n".join(json.dumps(r, ensure_ascii=False) for r in records) + ("\n" if records else "")
with open(LOCAL_BACKUP_DIR / f"{annotator}.jsonl", "w", encoding="utf-8") as f:
f.write(payload)
if _api:
try:
_api.upload_file(path_or_fileobj=payload.encode("utf-8"), path_in_repo=_resp_path(annotator),
repo_id=RESPONSE_DATASET, repo_type="dataset",
commit_message=f"responses {annotator} {int(time.time())}")
except Exception as e:
print(f"[WARN] HF upload failed (kept local backup): {e}")
def save_records(annotator, new_records):
existing = load_existing_responses(annotator)
existing.extend(new_records)
_write_responses(annotator, existing)
return existing
def migrate_responses(old, new):
"""Rename an annotator: copy their append-only responses to the new key. Old data is preserved as-is."""
recs = load_existing_responses(old)
for r in recs:
r["annotator"] = new
if recs:
_write_responses(new, recs)
# ----------------------------------------------------------------------------- ordering
def reader_order(annotator):
# Arm B (discovered-category coherence) is the paper's primary endpoint and time is short, so we present
# every reader's remaining Arm B cases first, then Arm A. Each arm is still shuffled by the reader's own
# seed (internal blinding of the hidden pos/neg controls is preserved), and completed cases are skipped by
# first_unfinished_idx, so a reader resumes into her next unfinished Arm B case and keeps all prior work.
seed = int(hashlib.sha256(annotator.encode()).hexdigest(), 16) % (2**32)
b_ids = [c["case_id"] for c in CASES if c.get("arm", "A") == "B"]
a_ids = [c["case_id"] for c in CASES if c.get("arm", "A") != "B"]
random.Random(seed).shuffle(b_ids)
random.Random(seed + 1).shuffle(a_ids)
return b_ids + a_ids
def first_unfinished_idx(order, records):
done = completed_case_ids(records)
for i, cid in enumerate(order):
if cid not in done:
return i
return len(order)
# ----------------------------------------------------------------------------- UI (images)
def image_html(dom_id, uri):
if not uri:
return "<div class='imgcell'><div class='imgbox empty'>[no image]</div></div>"
return f"""
<div class='imgcell'>
<div class='imgbox'><img id='{dom_id}' src='{uri}' data-bright='1' data-contrast='1' data-zoom='1'></div>
<div class='strip'>
<button type='button' onclick="rsZoom('{dom_id}',-0.25)" title='zoom out (this image only)'>−</button>
<span class='lbl'>zoom</span>
<button type='button' onclick="rsZoom('{dom_id}',0.25)" title='zoom in (this image only)'>+</button>
<label class='lbl'>bright<input type='range' min='0.3' max='2.5' step='0.05' value='1'
title='brightness (display only)' oninput="rsSet('{dom_id}','bright',this.value)"></label>
<label class='lbl'>contrast<input type='range' min='0.3' max='2.5' step='0.05' value='1'
title='contrast (display only)' oninput="rsSet('{dom_id}','contrast',this.value)"></label>
</div>
</div>"""
def image_grid_html(prefix, uris, single=False):
cls = "grid single" if single else "grid"
cells = "".join(image_html(f"{prefix}_{k}", u) for k, u in enumerate(uris)) or "[no images]"
return f"<div class='{cls}'>{cells}</div>"
# ----------------------------------------------------------------------------- UI text (self-explanatory, on-screen)
PROVENANCE = (
"<div class='prov'><b>Where these images come from.</b> This app validates an AI system for "
"<b>Stimulated Raman Histology (SRH)</b> of brain tumors. In <b>Task A</b> a single patch is shown; it is "
"either a <b>real</b> acquired SRH field or an <b>AI-generated</b> one, shown blinded and rendered identically "
"as virtual H&E. In <b>Task B</b> a group of patches that the model discovered as one category is shown; "
"some groups are real known-tumor categories, some are candidate novel/rare categories, and one is a "
"deliberately scrambled (random) group used as a hidden control. You are blinded to all sources. "
"You can stop and resume anytime; your work saves as you go.</div>")
RESOLUTION_NOTE = (
"<div class='legend' style='background:#fff5f5;border-color:#f0b3b3;'>"
"<b style='color:#c0261c;'>About image resolution:</b> these are stimulated-Raman tissue fields shown at "
"their native acquisition resolution, which is <b>uniform across every image</b> (it is not a quality "
"defect and is unrelated to whether an image is real or AI-generated). Please assess <b>tissue morphology "
"and pattern</b> rather than sharpness; use the <b>+ zoom</b> control on any image if helpful.</div>")
PROMPT_A = ("### Task A - Is this single SRH patch real or AI-generated?\n"
"Judge purely from morphology and texture, not sharpness. You are blinded to the source.")
LEGEND_A = (
RESOLUTION_NOTE +
"<div class='legend'>"
"<b>Real vs AI-generated:</b> Real = a genuine acquired SRH field; AI-generated = synthesized by a model.<br>"
"<b>Confidence 1-5:</b> 1 = pure guess, 2 = low, 3 = moderate, 4 = high, 5 = certain.<br>"
"<b>Looks copied/memorized:</b> Yes if it looks like a near-duplicate of a specific real example.<br>"
"<b>Clinical plausibility:</b> Plausible = could be genuine tissue; Minor artifacts = mostly realistic with "
"small oddities; Implausible = clearly not real tissue.</div>")
DEF_A = ("<span class='reddef'><b>Copied/memorized = a plausible-looking near-duplicate of a specific real field, "
"not a fresh example.</b> Example: nuclei arrangement and background that appear lifted verbatim from one "
"known image rather than a new, independently generated field.</span>")
PROMPT_B = ("### Task B - Is this a coherent, clinically meaningful category?\n"
"The patches were grouped by the model as ONE discovered category. Decide if they share a coherent, "
"clinically meaningful morphology (a real entity/pattern) or are an incoherent mix (an artifact). "
"Optionally name the morphology or putative entity.")
LEGEND_B = (
RESOLUTION_NOTE +
"<div class='legend'>"
"<b>Coherent & meaningful (Yes):</b> the patches share one recognizable morphology that could correspond "
"to a real tumor type/pattern.<br>"
"<b>Partial:</b> a dominant shared pattern plus some outliers.<br>"
"<b>No:</b> an incoherent mix with no shared morphology (a clustering artifact).<br>"
"<b>Confidence 1-5:</b> 1 = pure guess ... 5 = certain.</div>")
DEF_B = ("<span class='reddef'><b>Meaningful = a morphology a pathologist would recognize as one entity/pattern, "
"not merely visually similar noise.</b> Example: uniformly monomorphic cells with salt-and-pepper nuclei "
"read as one entity (Yes); a mix of fibrous, cellular and necrotic fields with nothing in common (No).</span>")
LOGIN_OVERVIEW = (
"### What this study is\n"
"You are validating an AI system that analyzes **Stimulated Raman Histology (SRH)** of brain tumors, in two "
"short blinded tasks:\n"
"- **Task A (realism):** decide whether a single SRH patch is **real** or **AI-generated**, and whether it "
"looks copied.\n"
"- **Task B (category review):** decide whether a group of patches the model discovered as one category is a "
"**coherent, clinically meaningful** morphology or an artifact.\n\n"
"### Signing in\n"
"Use the login you were given (for example **Pathologist_1** with the password provided). After you sign in "
"you can **change your username and password** from the **Account settings** panel. Closing the tab does "
"**not** sign you out; a **progress counter** shows how many items you have finished, and you resume where "
"you left off.")
HOWTO = (
"**One item per screen; order is randomized; you are blinded to all sources. Every scale is printed on screen "
"next to the control, so you never need to scroll to recall a meaning.**\n\n"
"**Task A - Real vs AI-generated (single patch):** answer Real/Synthetic, Confidence (1-5), Looks copied? "
"(Yes/No), and Clinical plausibility. The full meaning of each option is shown inline.\n\n"
"**Task B - Discovered-category review (grid of patches):** answer Coherent & meaningful? (Yes/Partial/No), "
"Confidence (1-5), and an optional description.\n\n"
"**Viewing each image:** under every image there is **-/+** zoom and **bright** / **contrast** sliders that "
"change only your view, never the stored data.\n\n"
"**Saving & resuming:** press **Save & Next** to store the item and continue (required fields must be filled). "
"Stop anytime and sign back in to resume. Use **Logout** to end the session.")
DONE_MSG = (
"### All items complete. Thank you.\n\n"
"Your responses are saved securely. You may close this tab. If more items are added later, sign back in and "
"you will continue from the new items.")
SET_LS_JS = "(u,t)=>{ if(t){ localStorage.setItem('srh_reader_user',u); localStorage.setItem('srh_reader_token',t);} }"
GET_LS_JS = "()=>[localStorage.getItem('srh_reader_user')||'', localStorage.getItem('srh_reader_token')||'']"
CLR_LS_JS = "()=>{ localStorage.removeItem('srh_reader_user'); localStorage.removeItem('srh_reader_token'); location.reload(); }"
HEAD = """
<style>
.grid { display:flex; flex-wrap:wrap; gap:8px; }
.grid .imgcell { width:150px; }
.grid.single .imgcell { width:384px; }
.imgcell { display:flex; flex-direction:column; gap:3px; }
.imgbox { overflow:auto; max-height:260px; border:1px solid #d0d5dd; border-radius:6px; background:#0b0b0b; }
.grid.single .imgbox { max-height:384px; }
.imgbox.empty { display:flex; align-items:center; justify-content:center; color:#999; height:120px; background:#f3f4f6; }
.imgbox img { display:block; width:100%; height:auto; }
.strip { display:flex; align-items:center; gap:6px; flex-wrap:wrap; font-size:11px; }
.strip button { width:24px; height:22px; font-weight:700; cursor:pointer; }
.strip .lbl { color:#475467; }
.strip input[type=range] { width:64px; vertical-align:middle; }
.reddef { color:#c0261c; font-size:13px; display:block; margin:2px 0 6px; line-height:1.35; }
.legend { background:#f8fafc; border:1px solid #e4e7ec; border-radius:6px; padding:6px 9px; font-size:12.5px;
color:#1d2939; margin:2px 0 6px; line-height:1.45; }
.prov { background:#eef4ff; border:1px solid #cdddff; border-radius:6px; padding:7px 10px; font-size:12.5px;
color:#1d2939; margin-bottom:6px; line-height:1.45; }
.badge { font-size:15px; color:#101828; }
</style>
<script>
window.rsApply = function(id){
var img = document.getElementById(id); if(!img) return;
var b = img.dataset.bright||1, c = img.dataset.contrast||1, z = img.dataset.zoom||1;
img.style.filter = 'brightness('+b+') contrast('+c+')';
img.style.transform = 'scale('+z+')'; img.style.transformOrigin = 'top left';
};
window.rsSet = function(id, kind, val){ var i=document.getElementById(id); if(!i) return; i.dataset[kind]=val; window.rsApply(id); };
window.rsZoom = function(id, d){ var i=document.getElementById(id); if(!i) return; var z=parseFloat(i.dataset.zoom||1)+d; if(z<0.2)z=0.2; if(z>6)z=6; i.dataset.zoom=z; window.rsApply(id); };
</script>
"""
# ----------------------------------------------------------------------------- app
def build_app():
with gr.Blocks(title="SRH Pathology Validation Study", head=HEAD, theme=gr.themes.Soft()) as demo:
annotator_state = gr.State("")
index_state = gr.State(0)
order_state = gr.State([])
user_ls = gr.Textbox(visible=False)
tok_ls = gr.Textbox(visible=False)
tok_out = gr.Textbox(visible=False)
user_out = gr.Textbox(visible=False)
# ------------------------------------------------- LOGIN
with gr.Column(visible=True) as login_col:
gr.Markdown("## SRH Pathology Validation Study")
gr.Markdown(LOGIN_OVERVIEW)
name_in = gr.Textbox(label="Username", placeholder="e.g. Pathologist_1")
pass_in = gr.Textbox(label="Password", type="password")
login_btn = gr.Button("Sign in", variant="primary")
login_msg = gr.Markdown("")
# ------------------------------------------------- STUDY
with gr.Column(visible=False) as study_col:
with gr.Row():
gr.Markdown("## SRH Pathology Validation Study")
progress_md = gr.Markdown("0 / 0")
logout_btn = gr.Button("Logout", scale=0)
with gr.Accordion("How to grade (click to expand or collapse)", open=True):
gr.Markdown(HOWTO)
with gr.Accordion("Account settings (change your username or password)", open=False):
gr.Markdown("Change your login. Leave a field blank to keep it. Changing your username keeps all "
"your saved work.")
cs_user = gr.Textbox(label="New username (optional)")
cs_pw = gr.Textbox(label="New password (optional, min 6 chars)", type="password")
cs_confirm = gr.Textbox(label="Confirm new password", type="password")
cs_btn = gr.Button("Save account changes")
cs_msg = gr.Markdown("")
gr.HTML(PROVENANCE)
arm_badge_md = gr.Markdown("")
prompt_md = gr.Markdown("")
images_html = gr.HTML("")
# Arm A controls (definitions + legend printed inline, right where scored)
with gr.Group(visible=False) as a_group:
gr.HTML(LEGEND_A)
gr.HTML(DEF_A)
a_source = gr.Radio(["Real", "Synthetic"], label="Is this patch real or AI-generated?",
info="Real = genuine acquired SRH; Synthetic = AI-generated.")
a_conf = gr.Radio(["1", "2", "3", "4", "5"], label="Confidence",
info="1 = pure guess ... 5 = certain")
a_copied = gr.Radio(["No", "Yes"], label="Does it look copied/memorized from a real example?")
a_quality = gr.Radio(["Plausible", "Minor artifacts", "Implausible"], label="Clinical plausibility")
a_note = gr.Textbox(label="Note (optional)", lines=1)
# Arm B controls
with gr.Group(visible=False) as b_group:
gr.HTML(LEGEND_B)
gr.HTML(DEF_B)
b_coherent = gr.Radio(["Yes", "Partial", "No"],
label="Is this a coherent, clinically meaningful category?",
info="Yes = one recognizable morphology; Partial = dominant + outliers; No = incoherent mix.")
b_conf = gr.Radio(["1", "2", "3", "4", "5"], label="Confidence",
info="1 = pure guess ... 5 = certain")
b_desc = gr.Textbox(label="Optional: describe the morphology / putative entity", lines=1)
b_note = gr.Textbox(label="Note (optional)", lines=1)
status_md = gr.Markdown("")
save_btn = gr.Button("Save & Next", variant="primary")
done_md = gr.Markdown("", visible=False)
CASE_OUTPUTS = [arm_badge_md, prompt_md, images_html, progress_md, done_md,
a_group, a_source, a_conf, a_copied, a_quality, a_note,
b_group, b_coherent, b_conf, b_desc, b_note]
def _done_updates(progress):
return [gr.update(value=""), gr.update(value=""), gr.update(value=""),
gr.update(value=progress), gr.update(value=DONE_MSG, visible=True),
gr.update(visible=False), gr.update(value=None), gr.update(value=None),
gr.update(value=None), gr.update(value=None), gr.update(value=""),
gr.update(visible=False), gr.update(value=None), gr.update(value=None),
gr.update(value=""), gr.update(value="")]
def render_case(annotator, order, idx, records=None):
if records is None:
records = load_existing_responses(annotator)
progress = f"**{len(completed_case_ids(records))} / {N_CASES}** items completed"
if idx >= len(order):
return _done_updates(progress)
case = CASES_BY_ID[order[idx]]
arm = case.get("arm", "A")
if arm == "A":
imgs = image_grid_html(f"a{idx}", [img_data_uri(case.get("image", ""))], single=True)
return [gr.update(value="<span class='badge'><b>TASK A</b> - realism</span>"),
gr.update(value=PROMPT_A), gr.update(value=imgs),
gr.update(value=progress), gr.update(value="", visible=False),
gr.update(visible=True), gr.update(value=None), gr.update(value=None),
gr.update(value=None), gr.update(value=None), gr.update(value=""),
gr.update(visible=False), gr.update(value=None), gr.update(value=None),
gr.update(value=""), gr.update(value="")]
imgs = image_grid_html(f"b{idx}", [img_data_uri(p) for p in case.get("images", [])][:ARMB_MAX_TILES])
return [gr.update(value="<span class='badge'><b>TASK B</b> - discovered-category review</span>"),
gr.update(value=PROMPT_B), gr.update(value=imgs),
gr.update(value=progress), gr.update(value="", visible=False),
gr.update(visible=False), gr.update(value=None), gr.update(value=None),
gr.update(value=None), gr.update(value=None), gr.update(value=""),
gr.update(visible=True), gr.update(value=None), gr.update(value=None),
gr.update(value=""), gr.update(value="")]
def _blank():
return [gr.update() for _ in CASE_OUTPUTS]
def nav_login(msg=""):
return ([gr.update(value=""), gr.update(value=""),
gr.update(visible=True), gr.update(visible=False),
"", 0, [], gr.update(value=msg)] + _blank())
def nav_study(username, token, msg=""):
records = load_existing_responses(username)
order = reader_order(username)
idx = first_unfinished_idx(order, records)
ups = render_case(username, order, idx, records)
return ([gr.update(value=token), gr.update(value=username),
gr.update(visible=False), gr.update(visible=True),
username, idx, order, gr.update(value=msg)] + ups)
ALL_NAV = ([tok_out, user_out, login_col, study_col,
annotator_state, index_state, order_state, login_msg] + CASE_OUTPUTS)
# ---- auth ----
def do_login(name, pw):
name = (name or "").strip()
acc = load_accounts()
custom = acc.get("accounts", {}); claimed = set(acc.get("claimed_invites", []))
if name in custom and verify_pw(pw, custom[name]):
return nav_study(name, make_token(name))
if name in INVITES and name not in claimed and pw == INVITES[name]:
# first login: create the account under the login name; the reader can rename later
custom = acc.setdefault("accounts", {}); acc.setdefault("claimed_invites", [])
custom[name] = new_pw_record(pw, invite=name)
acc["claimed_invites"].append(name)
save_accounts(acc)
return nav_study(name, make_token(name))
if name in INVITES and name in claimed and name not in custom:
return nav_login("That login was already used. Sign in with your current password.")
return nav_login("Invalid username or password.")
def do_auto_login(name, tok):
name = (name or "").strip()
if not valid_token(name, tok):
return nav_login("")
if name in load_accounts().get("accounts", {}):
return nav_study(name, tok)
return nav_login("")
login_btn.click(do_login, [name_in, pass_in], ALL_NAV).then(None, [user_out, tok_out], None, js=SET_LS_JS)
pass_in.submit(do_login, [name_in, pass_in], ALL_NAV).then(None, [user_out, tok_out], None, js=SET_LS_JS)
# ---- change credentials (post-login) ----
def do_change(annotator, new_user, new_pw, confirm):
new_user = (new_user or "").strip()
acc = load_accounts(); custom = acc.setdefault("accounts", {})
if annotator not in custom:
return [gr.update(value="Session error, please sign in again."),
annotator, gr.update(value=annotator), gr.update(value=make_token(annotator))]
rec = dict(custom[annotator])
if new_pw:
if len(new_pw) < 6:
return [gr.update(value="New password must be at least 6 characters."),
annotator, gr.update(value=annotator), gr.update(value=make_token(annotator))]
if new_pw != confirm:
return [gr.update(value="New passwords do not match."),
annotator, gr.update(value=annotator), gr.update(value=make_token(annotator))]
rec = new_pw_record(new_pw, invite=rec.get("invite", ""))
target = annotator
if new_user and new_user != annotator:
if len(new_user) < 3:
return [gr.update(value="New username must be at least 3 characters."),
annotator, gr.update(value=annotator), gr.update(value=make_token(annotator))]
if new_user in custom or new_user in INVITES:
return [gr.update(value="That username is taken. Choose another."),
annotator, gr.update(value=annotator), gr.update(value=make_token(annotator))]
migrate_responses(annotator, new_user) # keep the reader's saved work under the new name
custom.pop(annotator, None)
target = new_user
custom[target] = rec
save_accounts(acc)
return [gr.update(value=f"Account updated. You are now signed in as **{target}**."),
target, gr.update(value=target), gr.update(value=make_token(target))]
cs_btn.click(do_change, [annotator_state, cs_user, cs_pw, cs_confirm],
[cs_msg, annotator_state, user_out, tok_out]).then(
None, [user_out, tok_out], None, js=SET_LS_JS)
# ---- save & next ----
def do_save(annotator, order, idx, a_src, a_cf, a_cp, a_q, a_nt, b_co, b_cf, b_ds, b_nt):
if idx >= len(order):
return [idx, gr.update(value="Nothing to save.")] + _blank()
case = CASES_BY_ID[order[idx]]
arm = case.get("arm", "A")
if arm == "A":
missing = [lbl for lbl, v in [("real/synthetic", a_src), ("confidence", a_cf),
("copied?", a_cp), ("plausibility", a_q)] if not v]
dims = {"task": "A", "judged_source": a_src, "confidence": a_cf, "looks_copied": a_cp,
"plausibility": a_q, "note": a_nt or "", "true_source": case.get("true_source")}
else:
missing = [lbl for lbl, v in [("coherent?", b_co), ("confidence", b_cf)] if not v]
dims = {"task": "B", "coherent": b_co, "confidence": b_cf, "description": b_ds or "",
"note": b_nt or "", "cluster_id": case.get("cluster_id"),
"is_control": case.get("is_control", "none")}
if missing:
return [idx, gr.update(value="Please answer: " + ", ".join(missing))] + _blank()
rec = {"schema_version": SCHEMA_VERSION, "app_build": APP_BUILD, "annotator": annotator,
"case_id": case["case_id"], "arm": arm, "item_id": "__case__", "dims": dims,
"shown_position": idx, "ts": int(time.time())}
records = save_records(annotator, [rec])
nxt = first_unfinished_idx(order, records)
return [nxt, gr.update(value="Saved.")] + render_case(annotator, order, nxt, records)
SAVE_INPUTS = [annotator_state, order_state, index_state,
a_source, a_conf, a_copied, a_quality, a_note,
b_coherent, b_conf, b_desc, b_note]
SAVE_OUTPUTS = [index_state, status_md] + CASE_OUTPUTS
save_btn.click(do_save, SAVE_INPUTS, SAVE_OUTPUTS)
# ---- logout ----
def do_logout():
return (gr.update(visible=True), gr.update(visible=False), "", 0, [])
logout_btn.click(do_logout, None,
[login_col, study_col, annotator_state, index_state, order_state]).then(
None, None, None, js=CLR_LS_JS)
# ---- boot / resume ----
demo.load(None, None, [user_ls, tok_ls], js=GET_LS_JS).then(do_auto_login, [user_ls, tok_ls], ALL_NAV)
return demo
if __name__ == "__main__":
_ensure_response_dataset()
build_app().queue().launch(server_name="0.0.0.0", server_port=7860)
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