Update app.py

app.py

@@ -104,7 +104,11 @@ def dl(valforkey):
     hh=pd.read_table('output/SBS96/Samples.txt') 
     hh['nums']=hh.iloc[:,1]
     hh['mutation_simple']=hh['MutationType'].apply(lambda x: re.sub('].$','',re.sub('^.\[','',x)))    
-    summary_table_sbs_all=hh.groupby('mutation_simple').apply(lambda x: x.sum())[['mutation_simple','nums']]    
+    summary_table_sbs_all=hh.groupby('mutation_simple').apply(lambda x: x.sum())[['mutation_simple','nums']]   
+    summary_table_sbs_all.to_csv('sbs_summary.txt',sep='\t',header=False,index=False)
+    with open("sbs_summary.txt","rb") as txt_file:
+        summary_table_sbs_all_bytes = txt_file.read()   
+        txt_file.close()     
         #st.download_button(label="Download image with single base substitution profiles", key=valforkey,
         #                    data=PDFbyte1,
         #                    file_name="SBS.pdf",
@@ -118,11 +122,15 @@ def dl(valforkey):
         hh2=pd.read_table('output/ID83/Samples.txt') 
         hh2['nums']=hh2.iloc[:,1]
         hh2['mutation_simple']=hh2['MutationType'].apply(lambda x: re.sub('].$','',re.sub('^.\[','',x)))    
-        summary_table_id_all=hh2.groupby('mutation_simple').apply(lambda x: x.sum())[['mutation_simple','nums']]            
+        summary_table_id_all=hh2.groupby('mutation_simple').apply(lambda x: x.sum())[['mutation_simple','nums']] 
+        summary_table_id_all.to_csv('id_summary.txt',sep='\t',header=False,index=False)
+        with open("id_summary.txt","rb") as txt_file:
+            summary_table_id_all_bytes = txt_file.read()   
+            txt_file.close()        
     else:
         PDFbyte2 = []
         Txtbyte2 = []  
-        summary_table_id_all=[]
+        summary_table_id_all_bytes=[]
     if glob.glob("output/DBS78/Suggested_Solution/COSMIC_DBS78_Decomposed_Solution/DBS78_Decomposition_Plots.pdf") != []:
         with open("output/DBS78/Suggested_Solution/COSMIC_DBS78_Decomposed_Solution/DBS78_Decomposition_Plots.pdf", "rb") as pdf_file:
             PDFbyte3 = pdf_file.read()
@@ -131,11 +139,15 @@ def dl(valforkey):
         hh3=pd.read_table('output/DBS78/Samples.txt') 
         hh3['nums']=hh3.iloc[:,1]
         hh3['mutation_simple']=hh3['MutationType'].apply(lambda x: re.sub('].$','',re.sub('^.\[','',x)))    
-        summary_table_dbs_all=hh3.groupby('mutation_simple').apply(lambda x: x.sum())[['mutation_simple','nums']]     
+        summary_table_dbs_all=hh3.groupby('mutation_simple').apply(lambda x: x.sum())[['mutation_simple','nums']]  
+        summary_table_dbs_all.to_csv('dbs_summary.txt',sep='\t',header=False,index=False)
+        with open("dbs_summary.txt","rb") as txt_file:
+            summary_table_dbs_all_bytes = txt_file.read()   
+            txt_file.close()           
     else:
         PDFbyte3 = []
         Txtbyte3=[]
-        summary_table_dbs_all=[]
+        summary_table_dbs_all_bytes=[]
     os.system('rm -r output')  
     os.system('rm -r input')       
     #os.remove("output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf")
@@ -151,7 +163,7 @@ def dl(valforkey):
         #                    data=PDFbyte2,
         #                    file_name="idel.pdf",
         #                    mime='application/octet-stream')
-    return PDFbyte1,PDFbyte2,PDFbyte3,Txtbyte1,Txtbyte2,Txtbyte3, summary_table_sbs_all, summary_table_id_all,summary_table_dbs_all
+    return PDFbyte1,PDFbyte2,PDFbyte3,Txtbyte1,Txtbyte2,Txtbyte3, summary_table_sbs_all_bytes, summary_table_id_all_bytes,summary_table_dbs_all_bytes