data/feature_schema.json

{
  "version": 2,
  "description": "Optimized ML feature schema for genus-level identification.",
  "features": [
    {"name": "Gram Stain", "kind": "pnv"},
    {"name": "Shape", "kind": "shape"},
    {"name": "Haemolysis", "kind": "pnv"},
    {"name": "Haemolysis Type", "kind": "pnv"},
    {"name": "Catalase", "kind": "pnv"},
    {"name": "Oxidase", "kind": "pnv"},
    {"name": "Indole", "kind": "pnv"},
    {"name": "Urease", "kind": "pnv"},
    {"name": "Citrate", "kind": "pnv"},
    {"name": "H2S", "kind": "pnv"},
    {"name": "DNase", "kind": "pnv"},
    {"name": "Lysine Decarboxylase", "kind": "pnv"},
    {"name": "Ornithine Decarboxylase", "kind": "pnv"},
    {"name": "Arginine dihydrolase", "kind": "pnv"},
    {"name": "ONPG", "kind": "pnv"},
    {"name": "Nitrate Reduction", "kind": "pnv"},
    {"name": "Methyl Red", "kind": "pnv"},
    {"name": "VP", "kind": "pnv"},
    {"name": "Coagulase", "kind": "pnv"},
    {"name": "Lipase Test", "kind": "pnv"},

    {"name": "Motility", "kind": "pnv"},
    {"name": "Motility Type", "kind": "category"},

    {"name": "Capsule", "kind": "pnv"},
    {"name": "Spore Formation", "kind": "pnv"},
    {"name": "Pigment", "kind": "category"},
    {"name": "Odor", "kind": "category"},
    {"name": "Colony Pattern", "kind": "category"},

    {"name": "TSI Pattern", "kind": "category"},

    {"name": "Temperature_4C", "kind": "binary"},
    {"name": "Temperature_25C", "kind": "binary"},
    {"name": "Temperature_30C", "kind": "binary"},
    {"name": "Temperature_37C", "kind": "binary"},
    {"name": "Temperature_42C", "kind": "binary"},

    {"name": "Lactose Fermentation", "kind": "pnv"},
    {"name": "Glucose Fermentation", "kind": "pnv"},
    {"name": "Sucrose Fermentation", "kind": "pnv"},
    {"name": "Mannitol Fermentation", "kind": "pnv"},
    {"name": "Maltose Fermentation", "kind": "pnv"},
    {"name": "Sorbitol Fermentation", "kind": "pnv"},
    {"name": "Xylose Fermentation", "kind": "pnv"},
    {"name": "Rhamnose Fermentation", "kind": "pnv"},
    {"name": "Arabinose Fermentation", "kind": "pnv"},
    {"name": "Raffinose Fermentation", "kind": "pnv"},
    {"name": "Trehalose Fermentation", "kind": "pnv"},
    {"name": "Inositol Fermentation", "kind": "pnv"},

    {"name": "Oxygen Requirement", "kind": "oxygen"},
    {"name": "Gas Production", "kind": "pnv"},

    {"name": "MacConkey Growth", "kind": "media_flag"},
    {"name": "Blood Growth", "kind": "media_flag"},
    {"name": "XLD Growth", "kind": "media_flag"},
    {"name": "Nutrient Growth", "kind": "media_flag"},
    {"name": "Cetrimide Growth", "kind": "media_flag"},
    {"name": "BCYE Growth", "kind": "media_flag"},
    {"name": "Hektoen Enteric Growth", "kind": "media_flag"},
    {"name": "Mannitol Salt Growth", "kind": "media_flag"},
    {"name": "Bordet-Gengou Growth", "kind": "media_flag"},
    {"name": "Thayer Martin Growth", "kind": "media_flag"},
    {"name": "Cycloserine Cefoxitin Fructose Growth", "kind": "media_flag"},
    {"name": "Sabouraud Growth", "kind": "media_flag"},
    {"name": "Lowenstein-Jensen Growth", "kind": "media_flag"},
    {"name": "Yeast Extract Mannitol Growth", "kind": "media_flag"},
    {"name": "BSK Growth", "kind": "media_flag"},
    {"name": "Brucella Growth", "kind": "media_flag"},
    {"name": "Charcoal Growth", "kind": "media_flag"},
    {"name": "BHI Growth", "kind": "media_flag"},
    {"name": "Ashby Growth", "kind": "media_flag"},
    {"name": "MRS Growth", "kind": "media_flag"},
    {"name": "Anaerobic Blood Growth", "kind": "media_flag"},
    {"name": "BP Growth", "kind": "media_flag"},
    {"name": "ALOA Growth", "kind": "media_flag"},
    {"name": "Anaerobic Growth", "kind": "media_flag"},
    {"name": "Chocolate Growth", "kind": "media_flag"},
    {"name": "TCBS Growth", "kind": "media_flag"} 
  ]
}