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Update data/rag/knowledge_base/Cardiobacterium/genus.json
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{
"schema_version": "1.0",
"level": "genus",
"genus": "Cardiobacterium",
"overview": {
"short": "Cardiobacterium species are Gram-negative, facultatively anaerobic rods belonging to the HACEK group of organisms.",
"clinical_context": "Primarily associated with subacute infective endocarditis, often in patients with underlying valvular disease."
},
"expected_fields": {
"Gram Stain": "Negative",
"Shape": "Rods",
"Motility": "Negative",
"Capsule": "Negative",
"Spore Formation": "Negative",
"Haemolysis": "Negative",
"Haemolysis Type": "None",
"Media Grown On": [
"Blood Agar",
"Chocolate Agar"
],
"Colony Morphology": [
"Small",
"Smooth",
"Grey"
],
"Oxygen Requirement": "Facultative Anaerobe",
"Growth Temperature": "35//37",
"Catalase": "Negative",
"Oxidase": "Positive",
"Indole": "Positive",
"Urease": "Negative",
"Citrate": "Negative",
"Methyl Red": "Negative",
"VP": "Negative",
"H2S": "Negative",
"DNase": "Negative",
"ONPG": "Negative",
"Coagulase": "Negative",
"Gelatin Hydrolysis": "Negative",
"Esculin Hydrolysis": "Negative",
"Nitrate Reduction": "Negative",
"NaCl Tolerant (>=6%)": "Negative",
"Lipase Test": "Negative",
"Lysine Decarboxylase": "Negative",
"Ornithine Decarboxylase": "Negative",
"Ornitihine Decarboxylase": "Negative",
"Arginine dihydrolase": "Negative",
"Glucose Fermentation": "Positive",
"Lactose Fermentation": "Negative",
"Sucrose Fermentation": "Negative",
"Maltose Fermentation": "Negative",
"Mannitol Fermentation": "Negative",
"Sorbitol Fermentation": "Negative",
"Xylose Fermentation": "Negative",
"Rhamnose Fermentation": "Negative",
"Arabinose Fermentation": "Negative",
"Raffinose Fermentation": "Negative",
"Trehalose Fermentation": "Negative",
"Inositol Fermentation": "Negative",
"Gas Production": "Negative",
"TSI Pattern": "Unknown",
"Colony Pattern": "Unknown",
"Pigment": "None",
"Motility Type": "None"
},
"field_notes": {
"Oxidase": "Consistently positive, supporting differentiation from many Enterobacterales.",
"Indole": "Positive reaction is characteristic of the genus.",
"Growth": "Slow-growing organism; colonies may take several days to appear."
},
"key_differentiators": [
{
"field": "Oxidase",
"expected": "Positive",
"distinguishes_from": ["Enterobacter", "Escherichia"],
"notes": "Oxidase positivity helps separate Cardiobacterium from Enterobacterales."
},
{
"field": "Indole",
"expected": "Positive",
"distinguishes_from": ["Aggregatibacter"],
"notes": "Indole positivity supports Cardiobacterium within the HACEK group."
}
],
"common_confusions": [
{
"genus": "Aggregatibacter",
"reason": "Both are HACEK organisms with similar clinical presentations."
},
{
"genus": "Kingella",
"reason": "Shared fastidious growth and Gram-negative rod morphology."
}
],
"when_to_question_identification": [
"Oxidase-negative isolate.",
"Rapid growth on routine media.",
"Absence of indole production."
],
"recommended_next_tests": [
{
"test": "Oxidase test",
"reason": "Confirms oxidase positivity typical of Cardiobacterium.",
"api_kit": "API NH"
},
{
"test": "Indole test",
"reason": "Supports genus-level identification.",
"api_kit": "API NH"
},
{
"test": "MALDI-TOF MS",
"reason": "Definitive identification of fastidious HACEK organisms."
}
],
"supported_species": [
"hominis",
"valvarum"
]
}