Create feature_schema.json
Browse files- data/feature_schema.json +179 -0
data/feature_schema.json
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| 1 |
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{
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| 2 |
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"version": 1,
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| 3 |
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"description": "Core feature schema for genus-level XGBoost classifier. Each feature becomes one numeric input column in this order.",
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| 4 |
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"features": [
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| 5 |
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{
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| 6 |
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"name": "Gram Stain",
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| 7 |
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"kind": "pnv"
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| 8 |
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},
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| 9 |
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{
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"name": "Shape",
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| 11 |
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"kind": "shape"
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| 12 |
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},
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| 13 |
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{
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| 15 |
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"name": "Catalase",
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| 16 |
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"kind": "pnv"
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| 17 |
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},
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| 18 |
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{
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| 19 |
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"name": "Oxidase",
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| 20 |
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"kind": "pnv"
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| 21 |
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},
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| 22 |
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{
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| 23 |
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"name": "Indole",
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| 24 |
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"kind": "pnv"
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| 25 |
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},
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| 26 |
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{
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| 27 |
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"name": "Urease",
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| 28 |
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"kind": "pnv"
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| 29 |
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},
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| 30 |
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{
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| 31 |
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"name": "Citrate",
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| 32 |
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"kind": "pnv"
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| 33 |
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},
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| 34 |
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{
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| 35 |
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"name": "Methyl Red",
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| 36 |
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"kind": "pnv"
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| 37 |
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},
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| 38 |
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{
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| 39 |
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"name": "VP",
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| 40 |
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"kind": "pnv"
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| 41 |
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},
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| 42 |
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{
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| 43 |
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"name": "H2S",
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| 44 |
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"kind": "pnv"
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| 45 |
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},
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| 46 |
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{
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| 47 |
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"name": "DNase",
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| 48 |
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"kind": "pnv"
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| 49 |
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},
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| 50 |
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{
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| 51 |
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"name": "Coagulase",
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| 52 |
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"kind": "pnv"
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| 53 |
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},
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| 54 |
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{
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| 55 |
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"name": "Nitrate Reduction",
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| 56 |
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"kind": "pnv"
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| 57 |
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},
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| 58 |
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{
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| 59 |
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"name": "ONPG",
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| 60 |
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"kind": "pnv"
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| 61 |
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},
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| 62 |
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{
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| 63 |
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"name": "Lysine Decarboxylase",
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| 64 |
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"kind": "pnv"
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| 65 |
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},
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| 66 |
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{
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| 67 |
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"name": "Ornitihine Decarboxylase",
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| 68 |
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"kind": "pnv"
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| 69 |
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},
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| 70 |
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{
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| 71 |
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"name": "Arginine dihydrolase",
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| 72 |
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"kind": "pnv"
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| 73 |
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},
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| 74 |
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{
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| 75 |
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"name": "NaCl Tolerant (>=6%)",
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| 76 |
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"kind": "pnv"
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| 77 |
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},
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| 78 |
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{
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| 79 |
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"name": "Motility",
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| 80 |
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"kind": "pnv"
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| 81 |
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},
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| 82 |
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{
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| 83 |
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"name": "Capsule",
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| 84 |
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"kind": "pnv"
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| 85 |
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},
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| 86 |
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{
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| 87 |
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"name": "Spore Formation",
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| 88 |
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"kind": "pnv"
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| 89 |
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},
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| 90 |
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| 91 |
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{
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| 92 |
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"name": "Oxygen Requirement",
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| 93 |
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"kind": "oxygen"
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| 94 |
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},
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| 95 |
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| 96 |
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{
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| 97 |
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"name": "Growth Temp Min",
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| 98 |
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"kind": "numeric_from_growth_temp"
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| 99 |
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},
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| 100 |
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{
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| 101 |
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"name": "Growth Temp Max",
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| 102 |
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"kind": "numeric_from_growth_temp"
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| 103 |
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},
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| 104 |
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| 105 |
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{
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| 106 |
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"name": "Glucose Fermentation",
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| 107 |
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"kind": "pnv"
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| 108 |
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},
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| 109 |
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{
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| 110 |
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"name": "Lactose Fermentation",
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| 111 |
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"kind": "pnv"
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| 112 |
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},
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| 113 |
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{
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| 114 |
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"name": "Sucrose Fermentation",
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| 115 |
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"kind": "pnv"
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| 116 |
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},
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| 117 |
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{
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| 118 |
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"name": "Mannitol Fermentation",
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| 119 |
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"kind": "pnv"
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| 120 |
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},
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| 121 |
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{
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| 122 |
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"name": "Maltose Fermentation",
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| 123 |
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"kind": "pnv"
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| 124 |
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},
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| 125 |
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{
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| 126 |
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"name": "Sorbitol Fermentation",
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| 127 |
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"kind": "pnv"
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| 128 |
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},
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| 129 |
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{
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| 130 |
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"name": "Xylose Fermentation",
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| 131 |
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"kind": "pnv"
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| 132 |
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},
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| 133 |
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{
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| 134 |
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"name": "Rhamnose Fermentation",
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| 135 |
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"kind": "pnv"
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| 136 |
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},
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| 137 |
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{
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| 138 |
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"name": "Arabinose Fermentation",
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| 139 |
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"kind": "pnv"
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| 140 |
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},
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| 141 |
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{
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| 142 |
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"name": "Raffinose Fermentation",
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| 143 |
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"kind": "pnv"
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| 144 |
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},
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| 145 |
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{
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| 146 |
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"name": "Trehalose Fermentation",
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| 147 |
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"kind": "pnv"
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| 148 |
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},
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| 149 |
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{
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| 150 |
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"name": "Inositol Fermentation",
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| 151 |
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"kind": "pnv"
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| 152 |
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},
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| 153 |
+
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| 154 |
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{
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| 155 |
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"name": "Nutrient Growth",
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| 156 |
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"kind": "media_flag"
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| 157 |
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},
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| 158 |
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{
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| 159 |
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"name": "MacConkey Growth",
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| 160 |
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"kind": "media_flag"
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| 161 |
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},
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| 162 |
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{
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| 163 |
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"name": "Blood Agar Growth",
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| 164 |
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"kind": "media_flag"
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| 165 |
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},
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| 166 |
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{
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| 167 |
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"name": "XLD Growth",
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| 168 |
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"kind": "media_flag"
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| 169 |
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},
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| 170 |
+
{
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| 171 |
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"name": "TCBS Growth",
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| 172 |
+
"kind": "media_flag"
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| 173 |
+
},
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| 174 |
+
{
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| 175 |
+
"name": "BCYE Growth",
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| 176 |
+
"kind": "media_flag"
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| 177 |
+
}
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| 178 |
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]
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| 179 |
+
}
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