Update data/extended_schema.json

data/extended_schema.json

@@ -3,74 +3,199 @@
     "value_type": "enum_PNV",
     "aliases": ["camp test", "camp reaction"]
   },
+
   "PYR": {
     "value_type": "enum_PNV",
     "aliases": ["pyr test", "pyr activity"]
   },
+
   "Bile Solubility": {
     "value_type": "enum_PNV",
     "aliases": ["bile soluble"]
   },
+
   "Hippurate Hydrolysis": {
     "value_type": "enum_PNV",
     "aliases": ["hippurate", "hippurate test"]
   },
+
   "Gas Production": {
     "value_type": "enum_PNV",
-    "aliases": ["gas", "with gas", "produces gas"]
+    "aliases": [
+      "gas production",
+      "gas-producing",
+      "gas producing",
+      "gas producer",
+      "produces gas",
+      "with gas",
+      "gas is produced"
+    ]
   },
+
   "Glucose Oxidation": {
     "value_type": "enum_PNV",
-    "aliases": ["oxidises glucose", "glucose oxidation"]
+    "aliases": [
+      "oxidises glucose",
+      "oxidizes glucose",
+      "oxidation of glucose",
+      "glucose oxidation",
+      "glucose oxidiser",
+      "glucose oxidizer"
+    ]
+  },
+
+  "Antibiotic Resistance": {
+    "value_type": "enum_PNV",
+    "aliases": [
+      "resistant to",
+      "antibiotic resistance",
+      "antibiotic-resistant"
+    ]
   },
 
   "Pigment": {
     "value_type": "enum_custom",
-    "allowed": ["None", "Blue-Green", "Yellow", "Red", "Brown", "Pink"],
-    "aliases": ["pigment", "pigmented", "coloured colonies", "blue green", "pyocyanin"]
+    "allowed": [
+      "Blue-Green",
+      "Green",
+      "Yellow",
+      "Red",
+      "Brown",
+      "Pink",
+      "Orange",
+      "Black",
+      "Violet"
+    ],
+    "aliases": [
+      "blue-green pigment",
+      "green pigment",
+      "yellow pigment",
+      "red pigment",
+      "brown pigment",
+      "pink pigment",
+      "orange pigment",
+      "black pigment",
+      "violet pigment",
+      "pyocyanin",
+      "pyoverdine",
+      "pigment production"
+    ]
   },
 
   "Odor": {
     "value_type": "enum_custom",
-    "allowed": ["None", "Grape", "Fruity", "Musty", "Pungent"],
-    "aliases": ["odor", "odour", "smell", "grape-like", "fruity odor", "musty smell"]
+    "allowed": [
+      "Grape",
+      "Fruity",
+      "Musty",
+      "Pungent",
+      "Putrid",
+      "Buttery",
+      "Earthy",
+      "Mousy",
+      "Fishy",
+      "Almond",
+      "Cheese"
+    ],
+    "aliases": [
+      "grape-like odor",
+      "fruity odor",
+      "musty odor",
+      "pungent odor",
+      "putrid odor",
+      "buttery odor",
+      "earthy odor",
+      "mousy odor",
+      "fishy odor",
+      "almond odor",
+      "cheese odor",
+      "distinct odor",
+      "characteristic smell"
+    ]
   },
 
   "Colony Pattern": {
     "value_type": "enum_custom",
     "allowed": [
-      "None",
       "CIN Bullseye",
       "XLD Black Center",
       "Mucoid",
       "Swarming",
       "Metallic",
       "Smooth",
-      "Rough"
+      "Rough",
+      "Chalky",
+      "Filamentous",
+      "Irregular",
+      "Corroding",
+      "Sticky",
+      "Molar-tooth"
     ],
-    "aliases": ["colony morphology", "colony", "appearance"]
+    "aliases": [
+      "cin bullseye colonies",
+      "bullseye colonies",
+      "xld black-centered colonies",
+      "black-centered colonies",
+      "mucoid colonies",
+      "swarming colonies",
+      "metallic sheen colonies",
+      "smooth colonies",
+      "rough colonies",
+      "chalky colonies",
+      "filamentous colonies",
+      "irregular colonies",
+      "corroding colonies",
+      "sticky colonies",
+      "molar-tooth colonies"
+    ]
   },
 
   "Motility Type": {
     "value_type": "enum_custom",
-    "allowed": ["None", "Tumbling", "Darting", "Swarming", "Umbrella"],
-    "aliases": ["motility", "movement"]
+    "allowed": [
+      "Tumbling",
+      "Darting",
+      "Swarming",
+      "Umbrella",
+      "Gliding",
+      "Axial",
+      "Peritrichous",
+      "Polar",
+      "Monotrichous",
+      "Lophotrichous"
+    ],
+    "aliases": [
+      "tumbling motility",
+      "darting motility",
+      "swarming motility",
+      "umbrella motility",
+      "gliding motility",
+      "axial filament",
+      "peritrichous flagella",
+      "polar flagella",
+      "monotrichous flagella",
+      "lophotrichous flagella"
+    ]
   },
 
   "TSI Pattern": {
     "value_type": "enum_custom",
-    "allowed": ["A/A", "K/A", "K/K", "K/A + H2S", "A/A + Gas"],
-    "aliases": ["tsi", "triple sugar iron", "slant", "butt"]
-  },
-
-  "Temperature Growth": {
-    "value_type": "enum_custom",
-    "allowed": ["4C", "25C", "30C", "37C", "42C"],
-    "aliases": ["growth at", "grows at", "temperature"]
-  },
-
-  "Antibiotic Resistance": {
-    "value_type": "enum_PNV",
-    "aliases": ["resistant to", "antibiotic resistance"]
+    "allowed": [
+      "A/A",
+      "K/A",
+      "K/K",
+      "A/A + Gas",
+      "K/A + H2S"
+    ],
+    "aliases": [
+      "tsi",
+      "tsi reaction",
+      "triple sugar iron",
+      "a slash a",
+      "k slash a",
+      "k slash k",
+      "h2s production on tsi",
+      "gas production on tsi"
+    ]
   }
-}
+}