{ "schema_version": "1.0", "level": "genus", "genus": "Enterococcus", "overview": { "short": "Enterococcus species are Gram-positive, facultatively anaerobic cocci that are part of normal gastrointestinal flora but frequently cause opportunistic infections.", "clinical_context": "Common causes of urinary tract infections, bacteremia, endocarditis, and intra-abdominal infections, particularly in healthcare settings." }, "expected_fields": { "Gram Stain": "Positive", "Shape": "Cocci", "Motility": "Negative", "Capsule": "Variable", "Spore Formation": "Negative", "Haemolysis": "Variable", "Haemolysis Type": "Variable", "Media Grown On": [ "Blood Agar", "Bile Esculin Agar" ], "Colony Morphology": [ "Small", "Grey", "Smooth" ], "Oxygen Requirement": "Facultative Anaerobe", "Growth Temperature": "10//45", "Catalase": "Negative", "Oxidase": "Negative", "Indole": "Negative", "Urease": "Negative", "Citrate": "Negative", "Methyl Red": "Positive", "VP": "Negative", "H2S": "Negative", "DNase": "Negative", "ONPG": "Negative", "Coagulase": "Negative", "Gelatin Hydrolysis": "Variable", "Esculin Hydrolysis": "Positive", "Nitrate Reduction": "Negative", "NaCl Tolerant (>=6%)": "Positive", "Lipase Test": "Negative", "Lysine Decarboxylase": "Negative", "Ornithine Decarboxylase": "Negative", "Ornitihine Decarboxylase": "Negative", "Arginine dihydrolase": "Variable", "Glucose Fermentation": "Positive", "Lactose Fermentation": "Variable", "Sucrose Fermentation": "Variable", "Maltose Fermentation": "Positive", "Mannitol Fermentation": "Variable", "Sorbitol Fermentation": "Variable", "Xylose Fermentation": "Negative", "Rhamnose Fermentation": "Variable", "Arabinose Fermentation": "Negative", "Raffinose Fermentation": "Variable", "Trehalose Fermentation": "Positive", "Inositol Fermentation": "Negative", "Gas Production": "Negative", "TSI Pattern": "Unknown", "Colony Pattern": "Unknown", "Pigment": "None", "Motility Type": "None" }, "field_notes": { "NaCl Tolerant (>=6%)": "A defining feature of Enterococcus and a key genus-level discriminator.", "Esculin Hydrolysis": "Bile esculin positivity is characteristic and diagnostically important.", "Catalase": "Typically negative; weak pseudocatalase reactions may occur." }, "key_differentiators": [ { "field": "NaCl Tolerant (>=6%)", "expected": "Positive", "distinguishes_from": ["Streptococcus"], "notes": "Growth in high salt differentiates Enterococcus from most streptococci." }, { "field": "Esculin Hydrolysis", "expected": "Positive", "distinguishes_from": ["Streptococcus"], "notes": "Bile esculin positivity supports Enterococcus identification." } ], "common_confusions": [ { "genus": "Streptococcus", "reason": "Shared Gram-positive coccal morphology and overlapping hemolysis patterns." }, { "genus": "Aerococcus", "reason": "Coccal morphology and variable hemolysis may overlap in routine culture." } ], "when_to_question_identification": [ "NaCl intolerance argues against Enterococcus.", "Strong catalase positivity suggests Staphylococcus.", "Bile esculin negativity is inconsistent." ], "recommended_next_tests": [ { "test": "PYR test", "reason": "Rapid confirmation of Enterococcus genus.", "api_kit": "API Strep" }, { "test": "Bile esculin test", "reason": "Supports genus-level identification.", "api_kit": "API Strep" }, { "test": "MALDI-TOF MS", "reason": "Reliable species-level identification.", "api_kit": "Not applicable" } ], "supported_species": [ "faecalis", "faecium", "gallinarum" ] }