import gradio as gr import os import glob import cv2 import numpy as np import torch from molscribe import MolScribe from indigo import Indigo from indigo.renderer import IndigoRenderer from huggingface_hub import hf_hub_download REPO_ID = "Erawan/MolScribe" FILENAME = "swin_base_char_aux_1m.pth" ckpt_path = hf_hub_download(REPO_ID, FILENAME) device = torch.device('cpu') model = MolScribe(ckpt_path, device) def generate_mol_image(molblock): indigo = Indigo() render = IndigoRenderer(indigo) indigo.setOption('render-output-format', 'png') indigo.setOption('render-background-color', '1,1,1') indigo.setOption('render-stereo-style', 'none') indigo.setOption('render-label-mode', 'hetero') mol = indigo.loadMolecule(molblock) buf = render.renderToBuffer(mol) img = cv2.imdecode(np.asarray(bytearray(buf), dtype=np.uint8), 1) return img def predict(image): prediction = model.predict_image(image) smiles = prediction['smiles'] molfile = prediction['molfile'] image = generate_mol_image(molfile) return image, smiles, molfile iface = gr.Interface( predict, inputs=gr.Image(label="Upload molecular image", show_label=False).style(height=256), outputs=[ gr.Image(label="Prediction").style(height=256), gr.Textbox(label="SMILES").style(show_copy_button=True), gr.Textbox(label="Molfile").style(show_copy_button=True), ], allow_flagging="auto", title="MolScribe", description="Internal Erawan team", examples=sorted(glob.glob('examples/*.png')), examples_per_page=20, ) iface.launch()