Spaces:
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Running
boards: correct organism labels; add H37Rv-only TB board
Browse files- board_meta.json +48 -4
- categories.json +2 -1
- data/bsubtilis_test.json +0 -0
- data/mtb_card.json +48 -0
- data/mtb_test.json +0 -0
- data/{bsubtilis_card.json โ sepidermidis_card.json} +6 -4
- data/sepidermidis_test.json +0 -0
board_meta.json
CHANGED
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@@ -133,10 +133,6 @@
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| 133 |
"ko": "๋ง๋ผ๋ฆฌ์ ์์ถฉ ์ฌ๋ฉธ โ ์ ํ๊ตฌ๋ด ๋จ๊ณ",
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| 134 |
"en": "Malaria parasite kill โ blood stage"
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| 135 |
},
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| 136 |
-
"BSubtilis": {
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| 137 |
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"ko": "๊ทธ๋์์ฑ๊ท ์ฌ๋ฉธ โ ์ ์ธํฌ ํ์ ",
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| 138 |
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"en": "Gram-positive kill โ whole-cell readout"
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| 139 |
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},
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| 140 |
"LD50": {
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| 141 |
"ko": "๊ธ์ฑ๋
์ฑ โ ์น์ฌ๋",
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| 142 |
"en": "Acute toxicity โ lethal dose"
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@@ -144,6 +140,54 @@
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"Selectivity": {
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"ko": "์ฌ์ฅ ์์ ์ญ โ ํ์ ์ธ๊ธฐ์ hERG ์ธ๊ธฐ์ ์ฐจ์ด",
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| 146 |
"en": "Cardiac safety margin โ target potency minus hERG"
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}
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}
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}
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| 133 |
"ko": "๋ง๋ผ๋ฆฌ์ ์์ถฉ ์ฌ๋ฉธ โ ์ ํ๊ตฌ๋ด ๋จ๊ณ",
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"en": "Malaria parasite kill โ blood stage"
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},
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| 136 |
"LD50": {
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| 137 |
"ko": "๊ธ์ฑ๋
์ฑ โ ์น์ฌ๋",
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| 138 |
"en": "Acute toxicity โ lethal dose"
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| 140 |
"Selectivity": {
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| 141 |
"ko": "์ฌ์ฅ ์์ ์ญ โ ํ์ ์ธ๊ธฐ์ hERG ์ธ๊ธฐ์ ์ฐจ์ด",
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| 142 |
"en": "Cardiac safety margin โ target potency minus hERG"
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+
},
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| 144 |
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"BACE1": {
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"ko": "์์ธ ํ์ด๋จธ ํ์ โ ์๋ฐ๋ก์ด๋ ์์ฑ ํจ์",
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"en": "Alzheimer target โ amyloid-producing protease"
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},
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"BRD4": {
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"ko": "์ํผ์ ๋คํฑ ํ์ โ ์ ์ ์ ์ฝ๊ธฐ ์ฐจ๋จ",
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"en": "Epigenetic target โ BET bromodomain"
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},
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"HDAC1": {
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"ko": "์ํผ์ ๋คํฑ ํ์ โ ํ์คํค ํ์์ธํธํ",
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"en": "Epigenetic target โ histone deacetylase"
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},
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"HIVRT": {
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"ko": "HIV ์ญ์ ์ฌํจ์ โ ํญ๋ฐ์ด๋ฌ์ค",
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"en": "HIV reverse transcriptase โ antiviral"
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},
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"Nav17": {
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"ko": "๋ง์ฑ ํต์ฆ ํ์ โ ๋น๋ง์ฝ์ฑ ์งํต ํ๋ณด",
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"en": "Chronic pain target โ non-opioid analgesia"
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},
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"ERalpha": {
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"ko": "์ ๋ฐฉ์ ํ์ โ ์์คํธ๋ก๊ฒ ์์ฉ์ฒด",
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"en": "Breast cancer target โ estrogen receptor alpha"
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},
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"Thrombin": {
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"ko": "ํญ์๊ณ ํ์ โ ํ์ ํ์ฑ ํจ์",
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"en": "Anticoagulant target โ thrombin"
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},
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"FactorXa": {
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"ko": "ํญ์๊ณ ํ์ โ ์ 10์ธ์ Xa",
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"en": "Anticoagulant target โ factor Xa"
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},
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"AR": {
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"ko": "์ ๋ฆฝ์ ์ ํ์ โ ์๋๋ก๊ฒ ์์ฉ์ฒด",
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"en": "Prostate cancer target โ androgen receptor"
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},
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"HIVPR": {
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"ko": "HIV ํ๋กํ
์์ โ ํญ๋ฐ์ด๋ฌ์ค",
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"en": "HIV protease โ antiviral"
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},
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"SEpidermidis": {
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"ko": "ํํผํฌ๋์๊ตฌ๊ท โ ์ ์ธํฌ ํ์ ",
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"en": "S. epidermidis โ whole-cell readout"
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},
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"MTB": {
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"ko": "๊ฒฐํต๊ท โ ํ์ค๊ท ์ฃผ H37Rv ์ ์ธํฌ ํ์ ",
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"en": "M. tuberculosis H37Rv โ whole-cell readout"
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}
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}
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}
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categories.json
CHANGED
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@@ -194,7 +194,8 @@
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"planned": 6,
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"boards": [
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"Malaria",
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-
"
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]
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},
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{
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"planned": 6,
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"boards": [
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"Malaria",
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"SEpidermidis",
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"MTB"
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]
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},
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{
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data/bsubtilis_test.json
DELETED
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The diff for this file is too large to render.
See raw diff
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data/mtb_card.json
ADDED
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@@ -0,0 +1,48 @@
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{
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"board": "MTB",
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"target": "โ",
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"type": "pMIC (์ ์ธํฌ ์ต์์ต์ ๋๋)",
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"cut": 2020,
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"threshold": 4.5,
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"n_train": 12588,
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"n_test": 2931,
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"positive_rate": 0.7359263050153532,
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"noise_floor": {
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"pairs": 235128,
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"compounds": 504,
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"median": 0.5016894462103991,
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"mean": 0.6808064487933246,
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"p75": 0.9208187539523749,
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"p90": 1.5105215264340135,
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"sd_single": 0.603551816306139
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},
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"baselines": {
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"์์ ์์ธก": {
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"auroc": 0.5,
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"prauc": 0.7359263050153532,
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"mae": 0.9169051070518842
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},
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"์ต๊ทผ์ ์ด์": {
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"auroc": 0.5983745009038537,
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"prauc": 0.7770305980411635,
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"mae": 0.9757214652005455
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},
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"Morgan+LightGBM": {
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"auroc": 0.6697259328740391,
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"prauc": 0.8538416770414989,
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"mae": 0.8062822382727481
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}
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},
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"near_threshold": 1193,
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"split_grade": "T",
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"split_grade_note": "์ต์ด ๋ณด๊ณ ์ฐ๋ ๊ธฐ์ค ์๊ฐ ๋ถํ ",
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"answer_grade": "P2",
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"answer_grade_note": "์์๋ฃ๋ ๊ณต๊ฐ์ง๋ง ๋จ์ ํ์ฐ๊ณผ ์ ๋ณ์ด ๋ณธ ํ๋ณธ์ ๋ง๋ ๋ค",
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"assay_keep": "H37Rv",
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"assay_drop": "resistant|MDR|XDR|CNCTC|clinical isolate|Erdman|Beijing|CDC1551|H37Ra",
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"source": "ChEMBL_37 ์ฌํ๋ ์ด์
",
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"axis": "X",
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"desc_ko": "๊ฒฐํต๊ท - ํ์ค๊ท ์ฃผ H37Rv ์ ์ธํฌ ์ฌ๋ฉธ",
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"desc_en": "M. tuberculosis H37Rv whole-cell kill",
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"built": "2026-08-24"
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}
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data/mtb_test.json
ADDED
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The diff for this file is too large to render.
See raw diff
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data/{bsubtilis_card.json โ sepidermidis_card.json}
RENAMED
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@@ -1,5 +1,5 @@
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{
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"board": "
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"target": "โ",
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"type": "pMIC (์ ์ธํฌ ์ต์์ต์ ๋๋)",
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"cut": 2018,
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@@ -38,9 +38,11 @@
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"split_grade_note": "์ต์ด ๋ณด๊ณ ์ฐ๋ ๊ธฐ์ค ์๊ฐ ๋ถํ ",
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"answer_grade": "P2",
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"answer_grade_note": "์์๋ฃ๋ ๊ณต๊ฐ์ง๋ง ๋จ์ ํ์ฐ๊ณผ ์ ๋ณ์ด ๋ณธ ํ๋ณธ์ ๋ง๋ ๋ค",
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"source": "ChEMBL_37 ์ฌํ๋ ์ด์
",
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"axis": "X",
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"desc_ko": "
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"desc_en": "
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-
"built": "2026-08-
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}
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{
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"board": "SEpidermidis",
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"target": "โ",
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"type": "pMIC (์ ์ธํฌ ์ต์์ต์ ๋๋)",
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"cut": 2018,
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"split_grade_note": "์ต์ด ๋ณด๊ณ ์ฐ๋ ๊ธฐ์ค ์๊ฐ ๋ถํ ",
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"answer_grade": "P2",
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"answer_grade_note": "์์๋ฃ๋ ๊ณต๊ฐ์ง๋ง ๋จ์ ํ์ฐ๊ณผ ์ ๋ณ์ด ๋ณธ ํ๋ณธ์ ๋ง๋ ๋ค",
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| 41 |
+
"assay_keep": null,
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| 42 |
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"assay_drop": null,
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"source": "ChEMBL_37 ์ฌํ๋ ์ด์
",
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"axis": "X",
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+
"desc_ko": "ํํผํฌ๋์๊ตฌ๊ท - ์ ์ธํฌ ์ฌ๋ฉธ",
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| 46 |
+
"desc_en": "S. epidermidis whole-cell kill",
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"built": "2026-08-24"
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| 48 |
}
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data/sepidermidis_test.json
ADDED
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The diff for this file is too large to render.
See raw diff
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