{
  "_about": "Real tool calls from scripts/make_tool_examples.py: clean scenario, seed 3. Positions and exposures were set by the script from the known truth, not by an agent. Units: z in mm, diameters in um, wavelength in nm, exposure in ms.",
  "get_setup": {
    "tool": "get_setup",
    "arguments": {
      "reason": "Read the setup before planning positions."
    },
    "reason": "Read the setup before planning positions.",
    "result": {
      "wavelength_nm": 1064.0,
      "stage_range_mm": [
        0.0,
        250.0
      ],
      "pixel_size_um": 5.5,
      "sensor_px": [
        512,
        512
      ],
      "sensor_size_mm": [
        2.816,
        2.816
      ],
      "full_scale_counts": 4095,
      "exposure_range_ms": [
        0.01,
        200.0
      ],
      "repeats_per_position": 5,
      "max_positions": 20,
      "positions_left": 20,
      "min_beam_width_um": 110.0
    }
  },
  "measure_at_saturated": {
    "tool": "measure_at",
    "arguments": {
      "z_mm": 120.0,
      "exposure_ms": 6.7,
      "reason": "First look at the waist with a long exposure."
    },
    "reason": "First look at the waist with a long exposure.",
    "result": {
      "measurement_id": "m1",
      "z_mm": 120.0,
      "exposure_ms": 6.7,
      "d_x_um": {
        "mean": 227.9,
        "std": 0.6
      },
      "d_y_um": {
        "mean": 239.4,
        "std": 0.4
      },
      "status": "pending",
      "positions_left": 19,
      "flags": {
        "saturated": true,
        "low_signal": false,
        "clipping_loss": false,
        "too_few_pixels": false,
        "not_converged": false,
        "roi_clipped": false,
        "beam_in_corners": false,
        "background_changed": false,
        "axes_not_aligned": false
      },
      "suggested_verdict": "reject",
      "reasons": [
        "saturated: pixels at full scale, use a shorter exposure"
      ],
      "warnings": [],
      "details": {
        "peak_counts": 3997.0,
        "saturated_pixel_fraction": 0.002365,
        "residual_offset_counts": -0.034,
        "max_offset_sigma": 1.0,
        "clipping_loss_percent": 0.0,
        "pixels_across": 41.4,
        "centroid_um": [
          -0.0,
          0.0
        ],
        "ellipticity": 0.952,
        "azimuth_deg": -87.8,
        "misalignment_deg": 0.0
      }
    }
  },
  "set_status_refused": {
    "tool": "set_status",
    "arguments": {
      "measurement_id": "m1",
      "status": "accept",
      "reason": "Try to keep it."
    },
    "reason": "Try to keep it.",
    "result": {
      "error": "m1 is saturated and cannot be accepted; measure again with a shorter exposure"
    }
  },
  "measure_at_clean": {
    "tool": "measure_at",
    "arguments": {
      "z_mm": 120.0,
      "exposure_ms": 1.675,
      "reason": "ISO position at +0.0 zR."
    },
    "reason": "ISO position at +0.0 zR.",
    "result": {
      "measurement_id": "m6",
      "z_mm": 120.0,
      "exposure_ms": 1.675,
      "d_x_um": {
        "mean": 199.9,
        "std": 1.3
      },
      "d_y_um": {
        "mean": 210.0,
        "std": 1.2
      },
      "status": "pending",
      "positions_left": 14,
      "flags": {
        "saturated": false,
        "low_signal": false,
        "clipping_loss": false,
        "too_few_pixels": false,
        "not_converged": false,
        "roi_clipped": false,
        "beam_in_corners": false,
        "background_changed": false,
        "axes_not_aligned": false
      },
      "suggested_verdict": "accept",
      "reasons": [],
      "warnings": [],
      "details": {
        "peak_counts": 3134.0,
        "saturated_pixel_fraction": 0.0,
        "residual_offset_counts": 0.034,
        "max_offset_sigma": 1.6,
        "clipping_loss_percent": 0.0,
        "pixels_across": 36.3,
        "centroid_um": [
          0.0,
          0.0
        ],
        "ellipticity": 0.951,
        "azimuth_deg": 88.9,
        "misalignment_deg": 0.0
      }
    }
  },
  "evaluate": {
    "tool": "evaluate",
    "arguments": {
      "reason": "Check the fit and ISO coverage."
    },
    "reason": "Check the fit and ISO coverage.",
    "result": {
      "status": "ok",
      "accepted_positions": 10,
      "x": {
        "fit_success": true,
        "not_determined": null,
        "waist_side": null,
        "waist_gap_mm": null,
        "d0_um": 200.12,
        "d0_std_um": 0.39,
        "z0_mm": 119.969,
        "z0_std_mm": 0.076,
        "theta_mrad": 8.1323,
        "theta_std_mrad": 0.0143,
        "z_r_mm": 24.608,
        "z_r_std_mm": 0.075,
        "m2": 1.2013,
        "m2_std": 0.0026,
        "residual_rms_percent": 0.284,
        "coverage": {
          "near": 5,
          "far": 5,
          "between": 0,
          "compliant": true,
          "summary": "x: 5 within ±1 zR, need 5; 5 beyond 2 zR, need 5"
        },
        "waist_accessibility": "inside",
        "waist_near_stage_end": null,
        "m2_below_1": false
      },
      "y": {
        "fit_success": true,
        "not_determined": null,
        "waist_side": null,
        "waist_gap_mm": null,
        "d0_um": 210.29,
        "d0_std_um": 0.4,
        "z0_mm": 119.967,
        "z0_std_mm": 0.079,
        "theta_mrad": 8.0666,
        "theta_std_mrad": 0.0142,
        "z_r_mm": 26.069,
        "z_r_std_mm": 0.078,
        "m2": 1.2521,
        "m2_std": 0.0027,
        "residual_rms_percent": 0.28,
        "coverage": {
          "near": 5,
          "far": 5,
          "between": 0,
          "compliant": true,
          "summary": "y: 5 within ±1 zR, need 5; 5 beyond 2 zR, need 5"
        },
        "waist_accessibility": "inside",
        "waist_near_stage_end": null,
        "m2_below_1": false
      },
      "iso_coverage_met": true,
      "general_astigmatism": false,
      "axes_not_aligned": false,
      "m2_below_1": false,
      "table": [
        {
          "id": "m1",
          "z_mm": 120.0,
          "d_x_um": 227.9,
          "d_y_um": 239.4,
          "status": "reject",
          "suggested": "reject",
          "flags": [
            "saturated"
          ]
        },
        {
          "id": "m2",
          "z_mm": 46.2,
          "d_x_um": 635.2,
          "d_y_um": 634.0,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m3",
          "z_mm": 63.4,
          "d_x_um": 500.2,
          "d_y_um": 501.0,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m4",
          "z_mm": 100.3,
          "d_x_um": 256.2,
          "d_y_um": 263.9,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m5",
          "z_mm": 110.2,
          "d_x_um": 215.4,
          "d_y_um": 224.3,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m6",
          "z_mm": 120.0,
          "d_x_um": 199.9,
          "d_y_um": 210.0,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m7",
          "z_mm": 129.8,
          "d_x_um": 214.9,
          "d_y_um": 224.4,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m8",
          "z_mm": 139.7,
          "d_x_um": 258.0,
          "d_y_um": 265.2,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m9",
          "z_mm": 176.6,
          "d_x_um": 501.2,
          "d_y_um": 501.9,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m10",
          "z_mm": 193.8,
          "d_x_um": 633.0,
          "d_y_um": 631.4,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        },
        {
          "id": "m11",
          "z_mm": 208.6,
          "d_x_um": 746.5,
          "d_y_um": 743.7,
          "status": "accept",
          "suggested": "accept",
          "flags": []
        }
      ]
    }
  },
  "finish": {
    "tool": "finish",
    "arguments": {
      "verdict": "iso_compliant",
      "explanation": "10 accepted positions, 5 within zR and 5 beyond 2 zR on both axes."
    },
    "reason": "10 accepted positions, 5 within zR and 5 beyond 2 zR on both axes.",
    "result": {
      "report": {
        "verdict": "iso_compliant",
        "explanation": "10 accepted positions, 5 within zR and 5 beyond 2 zR on both axes.",
        "evaluation": {
          "status": "ok",
          "accepted_positions": 10,
          "x": {
            "fit_success": true,
            "not_determined": null,
            "waist_side": null,
            "waist_gap_mm": null,
            "d0_um": 200.12,
            "d0_std_um": 0.39,
            "z0_mm": 119.969,
            "z0_std_mm": 0.076,
            "theta_mrad": 8.1323,
            "theta_std_mrad": 0.0143,
            "z_r_mm": 24.608,
            "z_r_std_mm": 0.075,
            "m2": 1.2013,
            "m2_std": 0.0026,
            "residual_rms_percent": 0.284,
            "coverage": {
              "near": 5,
              "far": 5,
              "between": 0,
              "compliant": true,
              "summary": "x: 5 within ±1 zR, need 5; 5 beyond 2 zR, need 5"
            },
            "waist_accessibility": "inside",
            "waist_near_stage_end": null,
            "m2_below_1": false
          },
          "y": {
            "fit_success": true,
            "not_determined": null,
            "waist_side": null,
            "waist_gap_mm": null,
            "d0_um": 210.29,
            "d0_std_um": 0.4,
            "z0_mm": 119.967,
            "z0_std_mm": 0.079,
            "theta_mrad": 8.0666,
            "theta_std_mrad": 0.0142,
            "z_r_mm": 26.069,
            "z_r_std_mm": 0.078,
            "m2": 1.2521,
            "m2_std": 0.0027,
            "residual_rms_percent": 0.28,
            "coverage": {
              "near": 5,
              "far": 5,
              "between": 0,
              "compliant": true,
              "summary": "y: 5 within ±1 zR, need 5; 5 beyond 2 zR, need 5"
            },
            "waist_accessibility": "inside",
            "waist_near_stage_end": null,
            "m2_below_1": false
          },
          "iso_coverage_met": true,
          "general_astigmatism": false,
          "axes_not_aligned": false,
          "m2_below_1": false,
          "table": [
            {
              "id": "m1",
              "z_mm": 120.0,
              "d_x_um": 227.9,
              "d_y_um": 239.4,
              "status": "reject",
              "suggested": "reject",
              "flags": [
                "saturated"
              ]
            },
            {
              "id": "m2",
              "z_mm": 46.2,
              "d_x_um": 635.2,
              "d_y_um": 634.0,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m3",
              "z_mm": 63.4,
              "d_x_um": 500.2,
              "d_y_um": 501.0,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m4",
              "z_mm": 100.3,
              "d_x_um": 256.2,
              "d_y_um": 263.9,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m5",
              "z_mm": 110.2,
              "d_x_um": 215.4,
              "d_y_um": 224.3,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m6",
              "z_mm": 120.0,
              "d_x_um": 199.9,
              "d_y_um": 210.0,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m7",
              "z_mm": 129.8,
              "d_x_um": 214.9,
              "d_y_um": 224.4,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m8",
              "z_mm": 139.7,
              "d_x_um": 258.0,
              "d_y_um": 265.2,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m9",
              "z_mm": 176.6,
              "d_x_um": 501.2,
              "d_y_um": 501.9,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m10",
              "z_mm": 193.8,
              "d_x_um": 633.0,
              "d_y_um": 631.4,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            },
            {
              "id": "m11",
              "z_mm": 208.6,
              "d_x_um": 746.5,
              "d_y_um": 743.7,
              "status": "accept",
              "suggested": "accept",
              "flags": []
            }
          ]
        },
        "positions_measured": 11,
        "positions_accepted": 10,
        "positions_rejected": 1,
        "positions_pending": 0
      }
    }
  }
}