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import random
import numpy as np
from PIL import Image, ImageEnhance, ImageOps
from torchvision import transforms
class TNetPolicy(object):
"""
Applies the augmentation policy used in Jun et al's coronary artery segmentation T-Net
https://arxiv.org/abs/1905.04197. As described by the authors, first they zoom-in or zoom-out at a
random ratio within +/- 20%. Then, the image is shifted, horizontally and vertically, at a random
ratio within +/- 20% of the image size (512 x 512). Then, the angiography is rotated between
+/- 30 degrees. The rotation angle is not larger because actual angiographies do not deviate much
from this range. Finally, because the brightness of the angiography image can vary, the brightness is
also changed within +/- 40% at random rates.
Referred in the results as Aug1.
Example:
>>> policy = TNetPolicy()
>>> transformed_img, transformed_mask = policy(image, mask)
"""
def __init__(
self,
scale_ranges=[0.8, 1.2],
img_size=[512, 512],
translate=[0.2, 0.2],
rotation=[-30, 30],
brightness=0.4,
):
self.scale_ranges = scale_ranges
self.img_size = img_size
self.translate = translate
self.rotation = rotation
self.brightness = brightness
def __call__(self, image, mask=None):
tf_mask = None
tf_list = list() # List of transformation
# Random zoom-in or zoom-out of -20% to 20%
params = transforms.RandomAffine.get_params(
degrees=[0, 0],
translate=[0, 0],
scale_ranges=self.scale_ranges,
img_size=self.img_size,
shears=[0, 0],
)
tf_image = transforms.functional.affine(
image, params[0], params[1], params[2], params[3]
)
if mask is not None:
tf_mask = transforms.functional.affine(
mask, params[0], params[1], params[2], params[3]
)
# Random horizontal and vertical shift of -20% to 20%
params = transforms.RandomAffine.get_params(
degrees=[0, 0],
translate=self.translate,
scale_ranges=[1, 1],
img_size=self.img_size,
shears=[0, 0],
)
tf_image = transforms.functional.affine(
tf_image, params[0], params[1], params[2], params[3]
)
if mask is not None:
tf_mask = transforms.functional.affine(
tf_mask, params[0], params[1], params[2], params[3]
)
# Random rotation of -30 to 30 degress
angle = transforms.RandomRotation.get_params(self.rotation)
tf_image = transforms.functional.rotate(tf_image, angle)
if mask is not None:
tf_mask = transforms.functional.rotate(tf_mask, angle)
# Random brightness change of -40% to 40%
tf = transforms.ColorJitter(brightness=self.brightness)
tf_image = tf(tf_image)
if mask is not None:
return (tf_image, tf_mask)
else:
return tf_image
def __repr__(self):
return "TNet Coronary Artery Segmentation Augmentation Policy"
class RetinaPolicy(object):
def __init__(
self,
scale_ranges=[1, 1.1],
img_size=[512, 512],
translate=[0.1, 0.1],
rotation=[-20, 20],
crop_dims=[480, 480],
brightness=None,
):
self.scale_ranges = scale_ranges
self.img_size = img_size
self.translate = translate
self.rotation = rotation
self.brightness = brightness
self.crop_dims = crop_dims
def __call__(self, image, mask=None):
tf_mask = None
# Random crop
i, j, h, w = transforms.RandomCrop.get_params(image, self.crop_dims)
tf_image = transforms.functional.crop(image, i, j, h, w)
if mask is not None:
tf_mask = transforms.functional.crop(mask, i, j, h, w)
# Random rotation of -20 to 20 degress
angle = transforms.RandomRotation.get_params(self.rotation)
tf_image = transforms.functional.rotate(tf_image, angle)
if mask is not None:
tf_mask = transforms.functional.rotate(tf_mask, angle)
# Random horizontal and vertical shift of -10% to 10%
params = transforms.RandomAffine.get_params(
degrees=[0, 0],
translate=self.translate,
scale_ranges=[1, 1],
img_size=self.img_size,
shears=[0, 0],
)
tf_image = transforms.functional.affine(
tf_image, params[0], params[1], params[2], params[3]
)
if mask is not None:
tf_mask = transforms.functional.affine(
tf_mask, params[0], params[1], params[2], params[3]
)
# TODO: -10% to 10% may make more sense, due to the existance of images with black padding borders
# Random zoom-in of 0% to 10%
params = transforms.RandomAffine.get_params(
degrees=[0, 0],
translate=[0, 0],
scale_ranges=self.scale_ranges,
img_size=self.img_size,
shears=[0, 0],
)
tf_image = transforms.functional.affine(
tf_image, params[0], params[1], params[2], params[3]
)
if mask is not None:
tf_mask = transforms.functional.affine(
tf_mask, params[0], params[1], params[2], params[3]
)
# TODO: change brightness too
# Random brightness change
if self.brightness is not None:
tf = transforms.ColorJitter(brightness=self.brightness)
tf_image = tf(tf_image)
if mask is not None:
return (tf_image, tf_mask)
else:
return tf_image
def __repr__(self):
return "Retinal Vessel Segmentation Augmentation Policy"
class CoronaryPolicy(object):
def __init__(
self,
scale_ranges=[1, 1.1],
img_size=[512, 512],
translate=[0.1, 0.1],
rotation=[-20, 20],
brightness=None,
):
self.scale_ranges = scale_ranges
self.img_size = img_size
self.translate = translate
self.rotation = rotation
self.brightness = brightness
def __call__(self, image, mask=None):
tf_mask = None
# Random rotation of -20 to 20 degress
angle = transforms.RandomRotation.get_params(self.rotation)
tf_image = transforms.functional.rotate(image, angle)
if mask is not None:
tf_mask = transforms.functional.rotate(mask, angle)
# Random horizontal and vertical shift of -10% to 10%
params = transforms.RandomAffine.get_params(
degrees=[0, 0],
translate=self.translate,
scale_ranges=[1, 1],
img_size=self.img_size,
shears=[0, 0],
)
tf_image = transforms.functional.affine(
tf_image, params[0], params[1], params[2], params[3]
)
if mask is not None:
tf_mask = transforms.functional.affine(
tf_mask, params[0], params[1], params[2], params[3]
)
# TODO: -10% to 10% may make more sense, due to the existance of images with black padding borders
# Random zoom-in of 0% to 10%
params = transforms.RandomAffine.get_params(
degrees=[0, 0],
translate=[0, 0],
scale_ranges=self.scale_ranges,
img_size=self.img_size,
shears=[0, 0],
)
tf_image = transforms.functional.affine(
tf_image, params[0], params[1], params[2], params[3]
)
if mask is not None:
tf_mask = transforms.functional.affine(
tf_mask, params[0], params[1], params[2], params[3]
)
# TODO: change brightness too
# Random brightness change
if self.brightness is not None:
tf = transforms.ColorJitter(brightness=self.brightness)
tf_image = tf(tf_image)
if mask is not None:
return (tf_image, tf_mask)
else:
return tf_image
def __repr__(self):
return "Coronary Artery Segmentation Augmentation Policy"
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