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13878f7 fcdf1c1 13878f7 fcdf1c1 13878f7 fcdf1c1 13878f7 fcdf1c1 13878f7 fcdf1c1 13878f7 fcdf1c1 13878f7 fcdf1c1 13878f7 fcdf1c1 13878f7 fcdf1c1 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | # FishCaduceus
**FishCaduceus** is a family of single-nucleotide DNA language models developed for cyprinid and comparative fish genomics.
The project provides:
- pretrained FishCaduceus models with 512-bp and 1,024-bp context lengths
- pretraining datasets from seven major cyprinid aquaculture fishes and zebrafish
- cross-species benchmarks for translation initiation, translation termination, splice donor and splice acceptor prediction
- evolutionary constraint benchmarks derived from a 26-fish whole-genome alignment
FishCaduceus is designed for fish genome annotation, cross-species transfer, evolutionary constraint analysis and zero-shot variant prioritization.
## Resources
- Models: [FishCaduceus organization](https://huggingface.co/FishCaduceus)
- Functional-site benchmark: [FishCaduceus-Functional-Site-Benchmark](https://huggingface.co/datasets/FishCaduceus/FishCaduceus-Functional-Site-Benchmark)
- Evolutionary-constraint benchmark: [FishCaduceus-Evolutionary-Constraint-Benchmark](https://huggingface.co/datasets/FishCaduceus/FishCaduceus-Evolutionary-Constraint-Benchmark)
## Manuscript
**FishCaduceus: A DNA Language Model for Cyprinid Genomics at Single-Nucleotide Resolution**
The manuscript is in preparation.
## Contact
Xiao-Qin Xia
Institute of Hydrobiology, Chinese Academy of Sciences
Email: xqxia@ihb.ac.cn
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