FrancescoLR commited on
Commit
9df3660
·
verified ·
1 Parent(s): 3ebeec1

Update app.py

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Files changed (1) hide show
  1. app.py +3 -2
app.py CHANGED
@@ -151,7 +151,7 @@ def extract_middle_slices(nifti_path, output_image_path, slice_size=180, center=
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  plt.close()
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  # Function to run nnUNet inference
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- @spaces.GPU(duration=70) # Decorate the function to allocate GPU for its execution
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  def run_nnunet_predict(nifti_file):
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  # Prepare directories
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  os.makedirs(INPUT_DIR, exist_ok=True)
@@ -173,6 +173,7 @@ def run_nnunet_predict(nifti_file):
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  "-i", input_path,
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  "-o", hd_bet_output_path,
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  "-device", "cuda", # or "cpu"
 
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  ], check=True)
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  print("Skull-stripping completed.")
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  input_path = hd_bet_output_path
@@ -194,7 +195,7 @@ def run_nnunet_predict(nifti_file):
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  "-d", "004", # Dataset ID
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  "-c", "3d_fullres", # Configuration
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  "-tr", "nnUNetTrainer_8000epochs",
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- "-device", "cuda" # Explicitly use GPU
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  ]
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  print("Files in /tmp/output:")
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  print(os.listdir(OUTPUT_DIR))
 
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  plt.close()
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  # Function to run nnUNet inference
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+ @spaces.GPU(duration=90) # Decorate the function to allocate GPU for its execution
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  def run_nnunet_predict(nifti_file):
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  # Prepare directories
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  os.makedirs(INPUT_DIR, exist_ok=True)
 
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  "-i", input_path,
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  "-o", hd_bet_output_path,
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  "-device", "cuda", # or "cpu"
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+ "--disable_tta"
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  ], check=True)
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  print("Skull-stripping completed.")
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  input_path = hd_bet_output_path
 
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  "-d", "004", # Dataset ID
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  "-c", "3d_fullres", # Configuration
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  "-tr", "nnUNetTrainer_8000epochs",
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+ "-device", "cuda", # Explicitly use GPU
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  ]
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  print("Files in /tmp/output:")
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  print(os.listdir(OUTPUT_DIR))