Spaces:
Sleeping
Sleeping
Upload 3 files
Browse files- app.py +11 -16
- biobert_model (2).zip +3 -0
app.py
CHANGED
|
@@ -1,24 +1,19 @@
|
|
| 1 |
import gradio as gr
|
| 2 |
from transformers import AutoTokenizer, AutoModelForSequenceClassification
|
| 3 |
import torch
|
| 4 |
-
import torch.nn.functional as F
|
| 5 |
-
|
| 6 |
-
# Load model & tokenizer
|
| 7 |
-
model_path = "./biobert" # or "your-username/your-model-name" if from Hugging Face Hub
|
| 8 |
-
model = AutoModelForSequenceClassification.from_pretrained(model_path)
|
| 9 |
-
tokenizer = AutoTokenizer.from_pretrained(model_path)
|
| 10 |
-
model.eval()
|
| 11 |
|
|
|
|
|
|
|
| 12 |
|
|
|
|
|
|
|
| 13 |
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
def predict_interaction(text):
|
| 17 |
-
encoding = tokenizer(text, return_tensors="pt", truncation=True, padding=True)
|
| 18 |
with torch.no_grad():
|
| 19 |
-
outputs = model(**
|
| 20 |
-
|
| 21 |
-
|
| 22 |
-
return f"🧠 Prediction: {labels[pred]}"
|
| 23 |
|
| 24 |
-
gr.Interface(fn=
|
|
|
|
|
|
| 1 |
import gradio as gr
|
| 2 |
from transformers import AutoTokenizer, AutoModelForSequenceClassification
|
| 3 |
import torch
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4 |
|
| 5 |
+
# ✅ Load from current directory where files are
|
| 6 |
+
model_path = "."
|
| 7 |
|
| 8 |
+
tokenizer = AutoTokenizer.from_pretrained(model_path)
|
| 9 |
+
model = AutoModelForSequenceClassification.from_pretrained(model_path)
|
| 10 |
|
| 11 |
+
def predict(text):
|
| 12 |
+
inputs = tokenizer(text, return_tensors="pt", truncation=True, padding=True)
|
|
|
|
|
|
|
| 13 |
with torch.no_grad():
|
| 14 |
+
outputs = model(**inputs)
|
| 15 |
+
pred = torch.argmax(outputs.logits, dim=1).item()
|
| 16 |
+
return ["No interaction", "Mild", "Moderate", "Severe"][pred]
|
|
|
|
| 17 |
|
| 18 |
+
demo = gr.Interface(fn=predict, inputs="text", outputs="text", title="BioBERT Drug Interaction Predictor")
|
| 19 |
+
demo.launch()
|
biobert_model (2).zip
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6d71d2a2523c5cceb83cc93513beb47a5deebe0f451a2ae23b0963e002f4a13a
|
| 3 |
+
size 401868908
|