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Update app.py
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app.py
CHANGED
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@@ -2,9 +2,9 @@ import gradio as gr
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import pandas as pd
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import os
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# Load your labeled dataset with
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def load_drug_interaction_dataset():
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"""Load your labeled drug interaction dataset with
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try:
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# Your exact dataset filename
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dataset_path = 'merged_cleaned_dataset.csv'
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@@ -16,43 +16,28 @@ def load_drug_interaction_dataset():
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print(f"Dataset file {dataset_path} not found!")
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return create_fallback_database()
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# Load the dataset
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print(f"Loading dataset from: {dataset_path}")
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df = pd.read_csv(dataset_path)
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print(f"Dataset columns: {df.columns.tolist()}")
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print(f"Dataset shape: {df.shape}")
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print(f"First few rows:\n{df.head()}")
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#
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possible_drug1_cols = ['Drug 1_normalized', 'Drug1', 'drug_1']
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possible_drug2_cols = ['Drug 2_normalized', 'Drug2', 'drug_2']
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possible_severity_cols = ['severity', 'Severity', 'SEVERITY']
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drug1_col = next((col for col in possible_drug1_cols if col in df.columns), None)
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drug2_col = next((col for col in possible_drug2_cols if col in df.columns), None)
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severity_col = next((col for col in possible_severity_cols if col in df.columns), None)
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if not all([drug1_col, drug2_col, severity_col]):
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print(f"Required columns not found. Detected: drug1={drug1_col}, drug2={drug2_col}, severity={severity_col}")
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return create_fallback_database()
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print(f"Using columns: drug1={drug1_col}, drug2={drug2_col}, severity={severity_col}")
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# Create interaction dictionary
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interaction_db = {}
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count = 0
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for
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try:
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# Skip empty or invalid
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if (not all([drug1, drug2, severity]) or
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drug1 == 'nan' or drug2 == 'nan' or
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severity == 'nan' or severity.lower() == 'none'):
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print(f"Skipping invalid row {index}: {drug1}, {drug2}, {severity}")
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continue
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# Clean up severity labels
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@@ -60,19 +45,13 @@ def load_drug_interaction_dataset():
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if severity == 'No interaction':
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severity = 'No Interaction'
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# Add both orders to the dictionary
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interaction_db[(drug1, drug2)] = severity
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interaction_db[(drug2, drug1)] = severity
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count += 1
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if count % 100 == 0: # Log progress
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print(f"Processed {count} interactions")
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# Verify known pair
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if drug1 == 'warfarin' and drug2 == 'aspirin':
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print(f"Found Warfarin, Aspirin at row {index} with severity: {severity}")
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except Exception as e:
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print(f"Error processing row {
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continue
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print(f"β
Successfully loaded {count} drug interactions from dataset")
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@@ -84,18 +63,96 @@ def load_drug_interaction_dataset():
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return create_fallback_database()
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def create_fallback_database():
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"""Fallback database if dataset loading fails"""
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print("Using fallback database")
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return {
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('warfarin', 'aspirin'): 'Severe',
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('warfarin', 'ibuprofen'): 'Severe',
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('simvastatin', 'clarithromycin'): 'Severe',
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('clopidogrel', 'omeprazole'): 'Severe',
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('methotrexate', 'naproxen'): 'Severe',
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('digoxin', 'quinine'): 'Moderate',
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('lisinopril', 'ibuprofen'): 'Moderate',
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('metformin', 'ibuprofen'): 'Mild',
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('vitamin c', 'vitamin d'): 'No Interaction',
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}
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# Load your dataset
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@@ -106,12 +163,12 @@ def predict_interaction(drug_names):
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"""Predict interaction between two drugs using your labeled dataset"""
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try:
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if not drug_names or ',' not in drug_names:
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return "Please enter two drug names separated by a comma"
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# Split the input
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drugs = [drug.strip() for drug in drug_names.split(',')]
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if len(drugs) != 2:
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return "Please enter exactly two drug names"
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drug1, drug2 = drugs[0].lower(), drugs[1].lower()
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print(f"Looking up: '{drug1}' + '{drug2}'")
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@@ -120,46 +177,88 @@ def predict_interaction(drug_names):
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prediction = interaction_db.get((drug1, drug2))
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if prediction:
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else:
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#
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except Exception as e:
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return f"Error: {str(e)}"
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# Create interface
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with gr.Blocks() as demo:
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gr.Markdown("
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gr.Markdown("**
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drug_input = gr.Textbox(
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label="Enter drug names",
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placeholder="e.g., Warfarin, Aspirin",
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value="Warfarin, Aspirin"
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)
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# Show dataset info
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gr.Markdown(f"
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gr.Markdown(f"*Loaded {len(interaction_db)//2} interactions*")
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# Examples from your dataset
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gr.Examples(
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examples=[
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],
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inputs=drug_input,
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label="Try these examples:"
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)
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predict_btn.click(predict_interaction, drug_input, output)
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if __name__ == "__main__":
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demo.launch()
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import pandas as pd
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import os
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# Load your labeled dataset with exact column names
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def load_drug_interaction_dataset():
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"""Load your labeled drug interaction dataset with exact column names"""
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try:
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# Your exact dataset filename
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dataset_path = 'merged_cleaned_dataset.csv'
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print(f"Dataset file {dataset_path} not found!")
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return create_fallback_database()
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# Load the dataset with your exact column names
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print(f"Loading dataset from: {dataset_path}")
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df = pd.read_csv(dataset_path)
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print(f"Dataset columns: {df.columns.tolist()}")
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print(f"Dataset shape: {df.shape}")
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print(f"First few rows:\n{df.head()}")
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# Create interaction dictionary using your exact column names
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interaction_db = {}
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count = 0
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for _, row in df.iterrows():
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try:
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# Use your exact column names
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drug1 = str(row['Drug 1_normalized']).lower().strip()
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drug2 = str(row['Drug 2_normalized']).lower().strip()
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severity = str(row['severity']).strip()
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# Skip empty entries or invalid data
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if (not all([drug1, drug2, severity]) or
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drug1 == 'nan' or drug2 == 'nan' or
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severity == 'nan' or severity.lower() == 'none'):
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continue
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# Clean up severity labels
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if severity == 'No interaction':
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severity = 'No Interaction'
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# Add both orders to the dictionary - STORE ONLY THE SEVERITY STRING
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interaction_db[(drug1, drug2)] = severity
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interaction_db[(drug2, drug1)] = severity # Add reverse order
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count += 1
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except Exception as e:
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print(f"Error processing row {_}: {e}")
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continue
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print(f"β
Successfully loaded {count} drug interactions from dataset")
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return create_fallback_database()
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def create_fallback_database():
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"""Fallback database if dataset loading fails - FIXED STRUCTURE"""
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print("Using fallback database")
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return {
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# Severe interactions (Life-threatening) - STORE ONLY SEVERITY STRINGS
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('warfarin', 'aspirin'): 'Severe',
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('aspirin', 'warfarin'): 'Severe',
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('warfarin', 'ibuprofen'): 'Severe',
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('ibuprofen', 'warfarin'): 'Severe',
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('simvastatin', 'clarithromycin'): 'Severe',
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('clarithromycin', 'simvastatin'): 'Severe',
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('clopidogrel', 'omeprazole'): 'Severe',
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('omeprazole', 'clopidogrel'): 'Severe',
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('methotrexate', 'naproxen'): 'Severe',
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('naproxen', 'methotrexate'): 'Severe',
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('lithium', 'ibuprofen'): 'Severe',
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('ibuprofen', 'lithium'): 'Severe',
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('ssri', 'maoi'): 'Severe',
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('maoi', 'ssri'): 'Severe',
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('simvastatin', 'verapamil'): 'Severe',
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('verapamil', 'simvastatin'): 'Severe',
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('warfarin', 'fluconazole'): 'Severe',
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('fluconazole', 'warfarin'): 'Severe',
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('digoxin', 'verapamil'): 'Severe',
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('verapamil', 'digoxin'): 'Severe',
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# Moderate interactions (Requires monitoring)
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('digoxin', 'quinine'): 'Moderate',
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('quinine', 'digoxin'): 'Moderate',
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('lisinopril', 'ibuprofen'): 'Moderate',
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('ibuprofen', 'lisinopril'): 'Moderate',
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('metformin', 'alcohol'): 'Moderate',
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('alcohol', 'metformin'): 'Moderate',
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('levothyroxine', 'calcium'): 'Moderate',
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('calcium', 'levothyroxine'): 'Moderate',
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('atorvastatin', 'orange juice'): 'Moderate',
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('orange juice', 'atorvastatin'): 'Moderate',
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('phenytoin', 'warfarin'): 'Moderate',
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('warfarin', 'phenytoin'): 'Moderate',
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('theophylline', 'ciprofloxacin'): 'Moderate',
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('ciprofloxacin', 'theophylline'): 'Moderate',
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('warfarin', 'acetaminophen'): 'Moderate',
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('acetaminophen', 'warfarin'): 'Moderate',
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('metoprolol', 'verapamil'): 'Moderate',
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('verapamil', 'metoprolol'): 'Moderate',
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('spironolactone', 'digoxin'): 'Moderate',
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('digoxin', 'spironolactone'): 'Moderate',
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# Mild interactions (Minimal clinical significance)
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('metformin', 'ibuprofen'): 'Mild',
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('ibuprofen', 'metformin'): 'Mild',
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('omeprazole', 'calcium'): 'Mild',
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('calcium', 'omeprazole'): 'Mild',
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('vitamin d', 'calcium'): 'Mild',
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('calcium', 'vitamin d'): 'Mild',
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('aspirin', 'vitamin c'): 'Mild',
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('vitamin c', 'aspirin'): 'Mild',
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('atorvastatin', 'vitamin d'): 'Mild',
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('vitamin d', 'atorvastatin'): 'Mild',
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('metformin', 'vitamin b12'): 'Mild',
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('vitamin b12', 'metformin'): 'Mild',
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('omeprazole', 'vitamin b12'): 'Mild',
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('vitamin b12', 'omeprazole'): 'Mild',
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('aspirin', 'ginger'): 'Mild',
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('ginger', 'aspirin'): 'Mild',
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('warfarin', 'green tea'): 'Mild',
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('green tea', 'warfarin'): 'Mild',
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('levothyroxine', 'iron'): 'Mild',
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('iron', 'levothyroxine'): 'Mild',
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# No interactions (Clinically safe)
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('vitamin c', 'vitamin d'): 'No Interaction',
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('vitamin d', 'vitamin c'): 'No Interaction',
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('calcium', 'vitamin d'): 'No Interaction',
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('vitamin d', 'calcium'): 'No Interaction',
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('omeprazole', 'vitamin d'): 'No Interaction',
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('vitamin d', 'omeprazole'): 'No Interaction',
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('metformin', 'vitamin d'): 'No Interaction',
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('vitamin d', 'metformin'): 'No Interaction',
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('aspirin', 'vitamin e'): 'No Interaction',
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('vitamin e', 'aspirin'): 'No Interaction',
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('atorvastatin', 'coenzyme q10'): 'No Interaction',
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('coenzyme q10', 'atorvastatin'): 'No Interaction',
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('levothyroxine', 'vitamin d'): 'No Interaction',
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('vitamin d', 'levothyroxine'): 'No Interaction',
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('metoprolol', 'magnesium'): 'No Interaction',
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('magnesium', 'metoprolol'): 'No Interaction',
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('lisinopril', 'potassium'): 'No Interaction',
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('potassium', 'lisinopril'): 'No Interaction',
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('simvastatin', 'vitamin e'): 'No Interaction',
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('vitamin e', 'simvastatin'): 'No Interaction',
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}
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# Load your dataset
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"""Predict interaction between two drugs using your labeled dataset"""
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try:
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if not drug_names or ',' not in drug_names:
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return "β Please enter two drug names separated by a comma (e.g., 'Warfarin, Aspirin')"
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# Split the input
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drugs = [drug.strip() for drug in drug_names.split(',')]
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if len(drugs) != 2:
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return "β Please enter exactly two drug names separated by a comma"
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drug1, drug2 = drugs[0].lower(), drugs[1].lower()
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print(f"Looking up: '{drug1}' + '{drug2}'")
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prediction = interaction_db.get((drug1, drug2))
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if prediction:
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# Add appropriate emoji and formatting based on severity
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if prediction.lower() == 'severe':
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return f"π¨ **SEVERE INTERACTION**: {prediction}\nβ οΈ This combination may be life-threatening. Consult healthcare provider immediately."
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elif prediction.lower() == 'moderate':
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return f"β οΈ **MODERATE INTERACTION**: {prediction}\nπ Requires monitoring. Consult healthcare provider."
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elif prediction.lower() == 'mild':
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return f"β‘ **MILD INTERACTION**: {prediction}\nπ‘ Minimal clinical significance but monitor for effects."
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+
elif 'no interaction' in prediction.lower():
|
| 188 |
+
return f"β
**NO INTERACTION**: {prediction}\nπ’ These drugs appear to be safe to use together."
|
| 189 |
+
else:
|
| 190 |
+
return f"π **INTERACTION LEVEL**: {prediction}"
|
| 191 |
else:
|
| 192 |
+
# Try to find similar drugs for debugging
|
| 193 |
+
found_drugs = set()
|
| 194 |
+
for d1, d2 in interaction_db.keys():
|
| 195 |
+
found_drugs.add(d1)
|
| 196 |
+
found_drugs.add(d2)
|
| 197 |
+
|
| 198 |
+
print(f"Not found. Available drugs: {sorted(list(found_drugs))[:20]}...")
|
| 199 |
+
|
| 200 |
+
# Check if either drug exists in the database
|
| 201 |
+
drug1_exists = any(d1 == drug1 or d2 == drug1 for d1, d2 in interaction_db.keys())
|
| 202 |
+
drug2_exists = any(d1 == drug2 or d2 == drug2 for d1, d2 in interaction_db.keys())
|
| 203 |
+
|
| 204 |
+
if not drug1_exists and not drug2_exists:
|
| 205 |
+
return f"β **UNKNOWN DRUGS**: Neither '{drugs[0]}' nor '{drugs[1]}' found in database.\nπ‘ Try checking spelling or use generic names."
|
| 206 |
+
elif not drug1_exists:
|
| 207 |
+
return f"β **UNKNOWN DRUG**: '{drugs[0]}' not found in database.\nπ‘ Try checking spelling or use generic name."
|
| 208 |
+
elif not drug2_exists:
|
| 209 |
+
return f"β **UNKNOWN DRUG**: '{drugs[1]}' not found in database.\nπ‘ Try checking spelling or use generic name."
|
| 210 |
+
else:
|
| 211 |
+
return f"β **NO DATA AVAILABLE**: No interaction data found for '{drugs[0]}' and '{drugs[1]}'.\nπ‘ Consult healthcare provider for guidance."
|
| 212 |
|
| 213 |
except Exception as e:
|
| 214 |
+
return f"β Error: {str(e)}"
|
| 215 |
|
| 216 |
# Create interface
|
| 217 |
+
with gr.Blocks(title="Drug Interaction Predictor", theme=gr.themes.Soft()) as demo:
|
| 218 |
+
gr.Markdown("# π Drug Interaction Predictor")
|
| 219 |
+
gr.Markdown("**Predict potential drug interactions using clinical data**")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 220 |
|
| 221 |
+
with gr.Row():
|
| 222 |
+
with gr.Column():
|
| 223 |
+
drug_input = gr.Textbox(
|
| 224 |
+
label="Enter two drug names (separated by comma)",
|
| 225 |
+
placeholder="e.g., Warfarin, Aspirin",
|
| 226 |
+
value="Warfarin, Aspirin",
|
| 227 |
+
lines=2
|
| 228 |
+
)
|
| 229 |
+
|
| 230 |
+
predict_btn = gr.Button("π Predict Interaction", variant="primary", size="lg")
|
| 231 |
+
|
| 232 |
+
with gr.Column():
|
| 233 |
+
output = gr.Textbox(
|
| 234 |
+
label="Interaction Prediction",
|
| 235 |
+
lines=4,
|
| 236 |
+
interactive=False
|
| 237 |
+
)
|
| 238 |
|
| 239 |
# Show dataset info
|
| 240 |
+
gr.Markdown(f"*π Dataset loaded with {len(interaction_db)} drug pair interactions*")
|
|
|
|
| 241 |
|
| 242 |
# Examples from your dataset
|
| 243 |
gr.Examples(
|
| 244 |
examples=[
|
| 245 |
+
"Warfarin, Aspirin",
|
| 246 |
+
"Simvastatin, Clarithromycin",
|
| 247 |
+
"Digoxin, Quinine",
|
| 248 |
+
"Metformin, Alcohol",
|
| 249 |
+
"Vitamin C, Vitamin D"
|
| 250 |
],
|
| 251 |
inputs=drug_input,
|
| 252 |
+
label="π§ͺ Try these examples:"
|
| 253 |
)
|
| 254 |
|
| 255 |
predict_btn.click(predict_interaction, drug_input, output)
|
| 256 |
+
|
| 257 |
+
# Add disclaimer
|
| 258 |
+
gr.Markdown("""
|
| 259 |
+
---
|
| 260 |
+
**β οΈ Disclaimer**: This tool is for educational purposes only. Always consult with healthcare professionals before making any medical decisions.
|
| 261 |
+
""")
|
| 262 |
|
| 263 |
if __name__ == "__main__":
|
| 264 |
demo.launch()
|