Update app.py

app.py

@@ -516,8 +516,11 @@ def analyze_sequence_for_tree(sequence: str, matching_percentage: float) -> tupl
         tree_html_path = os.path.join(temp_dir, f'phylogenetic_tree_interactive_{query_id}.html')
         fig.write_html(tree_html_path)
         
-        # Generate detailed report - FIXED: Pass the user's input threshold
-        report_success = analyzer.generate_detailed_report(matched_ids, actual_percentage, matching_percentage)
+        # Ensure the analyzer has the correct user input threshold for the report
+        analyzer.matching_percentage = matching_percentage
+        
+        # Generate detailed report - FIXED: Only pass the two required parameters
+        report_success = analyzer.generate_detailed_report(matched_ids, actual_percentage)
         report_html_path = None
         if report_success:
             report_filename = f"detailed_report_{query_id.replace('/', '_')}.html"
@@ -537,8 +540,7 @@ def analyze_sequence_for_tree(sequence: str, matching_percentage: float) -> tupl
         logging.error(error_msg)
         import traceback
         logging.error(f"Full traceback: {traceback.format_exc()}")
-        return error_msg, None, None
-# --- Keras Prediction ---
+        return error_msg, None, None# --- Keras Prediction ---
 def predict_with_keras(sequence):
     try:
         if not keras_model or not kmer_to_index: