Upload 16 files

.idea/.gitignore

@@ -0,0 +1,6 @@
+# Default ignored files
+/shelf/
+/workspace.xml
+# Datasource local storage ignored files
+/dataSources/
+/dataSources.local.xml

.idea/BioNexus-Hub.iml

@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="WEB_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <content url="file://$MODULE_DIR$">
+      <excludeFolder url="file://$MODULE_DIR$/.tmp" />
+      <excludeFolder url="file://$MODULE_DIR$/temp" />
+      <excludeFolder url="file://$MODULE_DIR$/tmp" />
+    </content>
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>

.idea/copilot.data.migration.ask.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="AskMigrationStateService">
+    <option name="migrationStatus" value="COMPLETED" />
+  </component>
+</project>

.idea/copilot.data.migration.ask2agent.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="Ask2AgentMigrationStateService">
+    <option name="migrationStatus" value="COMPLETED" />
+  </component>
+</project>

.idea/modules.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/BioNexus-Hub.iml" filepath="$PROJECT_DIR$/.idea/BioNexus-Hub.iml" />
+    </modules>
+  </component>
+</project>

.idea/workspace.xml

@@ -0,0 +1,54 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="AutoImportSettings">
+    <option name="autoReloadType" value="SELECTIVE" />
+  </component>
+  <component name="ChangeListManager">
+    <list default="true" id="8d47968a-16b9-40b8-a89a-e4bca638b8f3" name="Changes" comment="" />
+    <option name="SHOW_DIALOG" value="false" />
+    <option name="HIGHLIGHT_CONFLICTS" value="true" />
+    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
+    <option name="LAST_RESOLUTION" value="IGNORE" />
+  </component>
+  <component name="ProjectColorInfo"><![CDATA[{
+  "associatedIndex": 5
+}]]></component>
+  <component name="ProjectId" id="34L8nrfyL48QuIbQoTA8YufQkPC" />
+  <component name="ProjectViewState">
+    <option name="hideEmptyMiddlePackages" value="true" />
+    <option name="showLibraryContents" value="true" />
+  </component>
+  <component name="PropertiesComponent"><![CDATA[{
+  "keyToString": {
+    "ModuleVcsDetector.initialDetectionPerformed": "true",
+    "RunOnceActivity.ShowReadmeOnStart": "true",
+    "node.js.detected.package.eslint": "true",
+    "node.js.detected.package.tslint": "true",
+    "node.js.selected.package.eslint": "(autodetect)",
+    "node.js.selected.package.tslint": "(autodetect)",
+    "nodejs_package_manager_path": "npm",
+    "settings.editor.selected.configurable": "terminal",
+    "vue.rearranger.settings.migration": "true"
+  }
+}]]></component>
+  <component name="SharedIndexes">
+    <attachedChunks>
+      <set>
+        <option value="bundled-js-predefined-d6986cc7102b-3aa1da707db6-JavaScript-WS-252.26830.93" />
+      </set>
+    </attachedChunks>
+  </component>
+  <component name="TaskManager">
+    <task active="true" id="Default" summary="Default task">
+      <changelist id="8d47968a-16b9-40b8-a89a-e4bca638b8f3" name="Changes" comment="" />
+      <created>1760981663051</created>
+      <option name="number" value="Default" />
+      <option name="presentableId" value="Default" />
+      <updated>1760981663051</updated>
+    </task>
+    <servers />
+  </component>
+  <component name="TypeScriptGeneratedFilesManager">
+    <option name="version" value="3" />
+  </component>
+</project>

docker-compose.override.yml

@@ -0,0 +1,28 @@
+version: '3.8'
+
+services:
+  client:
+    build:
+      context: ./client
+      dockerfile: Dockerfile.dev
+    ports:
+      - "5173:5173"
+    volumes:
+      - ./client:/app
+      - /app/node_modules
+    environment:
+      - NODE_ENV=development
+    command: npm run dev
+
+  server:
+    build:
+      context: ./server
+      dockerfile: Dockerfile.dev
+    ports:
+      - "3001:3001"
+    volumes:
+      - ./server:/app
+      - /app/node_modules
+    environment:
+      - NODE_ENV=development
+    command: npm run dev

docker-compose.yml

@@ -0,0 +1,42 @@
+version: '3.8'
+
+services:
+  client:
+    build:
+      context: ./client
+      dockerfile: Dockerfile
+    ports:
+      - "80:80"
+    depends_on:
+      - server
+    environment:
+      - REACT_APP_API_URL=http://localhost:3001
+
+  server:
+    build:
+      context: ./server
+      dockerfile: Dockerfile
+    ports:
+      - "3001:3001"
+    environment:
+      - DB_HOST=postgres
+      - DB_USER=postgres
+      - DB_PASSWORD=postgres
+      - DB_NAME=bionexus_hub
+      - DB_PORT=5432
+    depends_on:
+      - postgres
+
+  postgres:
+    image: postgres:15
+    environment:
+      - POSTGRES_USER=postgres
+      - POSTGRES_PASSWORD=postgres
+      - POSTGRES_DB=bionexus_hub
+    volumes:
+      - postgres_data:/var/lib/postgresql/data
+    ports:
+      - "5432:5432"
+
+volumes:
+  postgres_data:

health-check.bat

@@ -0,0 +1,22 @@
+@echo off
+echo Checking BioNexus Hub services...
+
+REM Check if server is running
+curl -f http://localhost:3001/health >nul 2>&1
+if %errorlevel% == 0 (
+    echo ✅ Server is running
+) else (
+    echo ❌ Server is not responding
+    exit /b 1
+)
+
+REM Check if client files are accessible
+curl -f http://localhost:80/ >nul 2>&1
+if %errorlevel% == 0 (
+    echo ✅ Client is accessible
+) else (
+    echo ❌ Client is not accessible
+    exit /b 1
+)
+
+echo ✅ All services are healthy

index.js

@@ -0,0 +1 @@
+console.log('Happy developing ✨')

package-lock.json

@@ -0,0 +1,372 @@
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+  "name": "BioNexus-Hub",
+  "version": "1.0.0",
+  "lockfileVersion": 3,
+  "requires": true,
+  "packages": {
+    "": {
+      "name": "BioNexus-Hub",
+      "version": "1.0.0",
+      "devDependencies": {
+        "concurrently": "^8.2.0"
+      }
+    },
+    "node_modules/@babel/runtime": {
+      "version": "7.28.4",
+      "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.28.4.tgz",
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+      "dev": true,
+      "license": "MIT",
+      "engines": {
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+      }
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+        "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
+      }
+    },
+    "node_modules/y18n": {
+      "version": "5.0.8",
+      "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz",
+      "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==",
+      "dev": true,
+      "license": "ISC",
+      "engines": {
+        "node": ">=10"
+      }
+    },
+    "node_modules/yargs": {
+      "version": "17.7.2",
+      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz",
+      "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "cliui": "^8.0.1",
+        "escalade": "^3.1.1",
+        "get-caller-file": "^2.0.5",
+        "require-directory": "^2.1.1",
+        "string-width": "^4.2.3",
+        "y18n": "^5.0.5",
+        "yargs-parser": "^21.1.1"
+      },
+      "engines": {
+        "node": ">=12"
+      }
+    },
+    "node_modules/yargs-parser": {
+      "version": "21.1.1",
+      "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz",
+      "integrity": "sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==",
+      "dev": true,
+      "license": "ISC",
+      "engines": {
+        "node": ">=12"
+      }
+    }
+  }
+}

package.json

@@ -0,0 +1,18 @@
+{
+  "name": "BioNexus-Hub",
+  "version": "1.0.0",
+  "description": "A lightweight, regional-to-global digital nexus that connects policymakers, companies, researchers, civil society and communities to accelerate bioeconomy solutions that reduce food loss & waste (FLW) and catalyse circular agrifood-system transformation.",
+  "main": "index.js",
+  "scripts": {
+    "dev": "concurrently \"npm run dev:client\" \"npm run dev:server\"",
+    "dev:client": "cd client && npm run dev",
+    "dev:server": "cd server && npm run dev",
+    "build": "cd client && npm run build",
+    "start": "node index.js",
+    "test": "echo \"Error: no test specified\" && exit 1"
+  },
+  "private": true,
+  "devDependencies": {
+    "concurrently": "^8.2.0"
+  }
+}

start.bat

@@ -0,0 +1,15 @@
+@echo off
+echo Starting BioNexus Hub application...
+
+REM Start the server in the background
+cd server
+start npm start
+
+REM Wait a moment for the server to start
+timeout /t 5 /nobreak >nul
+
+REM Build the client
+cd ../client
+npm run build
+
+echo BioNexus Hub application started successfully!

start.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+
+# Startup script for BioNexus Hub on Hugging Face Spaces
+
+echo "Starting BioNexus Hub application..."
+
+# Start the server in the background
+cd server
+npm start &
+
+# Wait a moment for the server to start
+sleep 5
+
+# Start the client
+cd ../client
+npm run build
+
+echo "BioNexus Hub application started successfully!"