Init app

.gitattributes

@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+*.jpg filter=lfs diff=lfs merge=lfs -text
+*.png filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -0,0 +1,160 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# Project specific
+src/animal-image-dataset-90-different-animals
+src/results/plots/
+src/train_resnet.py
+src/visualize_gradcam.ipynb
+src/cache/data.csv

src/Nets.py

@@ -0,0 +1,49 @@
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+from torchvision import models
+
+class SimpleCNN(nn.Module):
+    def __init__(self, k_size=3, pool_size=2, num_classes=1):
+        super(SimpleCNN, self).__init__()
+        self.relu = nn.ReLU()
+        # First Convolutional Layer
+        self.conv1 = nn.Conv2d(in_channels=3, out_channels=8, kernel_size=k_size, padding=1)
+        self.conv2 = nn.Conv2d(in_channels=8, out_channels=16, kernel_size=k_size, stride=1, padding=1)
+        self.pool1 = nn.MaxPool2d(kernel_size=pool_size)
+
+        # Second Convolutional Layer
+        self.conv3 = nn.Conv2d(in_channels=16, out_channels=32, kernel_size=k_size, stride=1, padding=1)
+        self.conv4 = nn.Conv2d(in_channels=32, out_channels=32, kernel_size=k_size, stride=1, padding=1)
+        self.pool2 = nn.MaxPool2d(kernel_size=pool_size)
+        
+        self.conv5 = nn.Conv2d(in_channels=32, out_channels=64, kernel_size=k_size, stride=1, padding=1)
+        self.conv6 = nn.Conv2d(in_channels=64, out_channels=64, kernel_size=k_size, stride=1, padding=1)
+        self.pool3 = nn.MaxPool2d(kernel_size=pool_size)
+        
+        self.conv7 = nn.Conv2d(in_channels=64, out_channels=64, kernel_size=k_size, stride=1, padding=1)
+        self.conv8 = nn.Conv2d(in_channels=64, out_channels=64, kernel_size=k_size, stride=1, padding=1)
+        self.pool4 = nn.MaxPool2d(kernel_size=pool_size)
+        
+        # Fully Connected Layers
+        self.fc = nn.Linear(64*14*14, num_classes)  # Adjust the input features based on your input image size
+
+    def forward(self, x):
+        x = self.pool1(self.relu(self.conv2(self.relu(self.conv1(x)))))
+        x = self.pool2(self.relu(self.conv4(self.relu(self.conv3(x)))))
+        x = self.pool3(self.relu(self.conv6(self.relu(self.conv5(x)))))
+        x = self.pool4(self.relu(self.conv8(self.relu(self.conv7(x)))))
+        # print(x.shape)
+        x = x.view(x.size(0), -1)
+        x = self.fc(x)
+        return x
+    
+class CustomResNet18(nn.Module):
+    def __init__(self, num_classes=11):
+        super(CustomResNet18, self).__init__()
+        self.resnet = models.resnet18(pretrained=True)
+        num_features = self.resnet.fc.in_features
+        self.resnet.fc = nn.Linear(num_features, num_classes)
+
+    def forward(self, x):
+        return self.resnet(x)

src/app.py

@@ -0,0 +1,184 @@
+import gradio as gr
+from datetime import datetime
+import pytz
+import torch
+import torch.nn as nn
+import torch.optim as optim
+from torch.utils.data import DataLoader
+import pandas as pd
+from tqdm import tqdm
+from collections import defaultdict
+import os
+from PIL import Image
+import shutil
+import copy
+import numpy as np
+import matplotlib.pyplot as plt
+from util import transform, train_transform, AnimalDataset
+from Nets import CustomResNet18
+from deep_translator import GoogleTranslator
+from torchcam.methods import SmoothGradCAMpp, XGradCAM, ScoreCAM, GradCAM, GradCAMpp, CAM
+import matplotlib.pyplot as plt
+from torchcam.utils import overlay_mask
+from torchvision.transforms.functional import to_pil_image
+from sklearn.preprocessing import LabelEncoder
+from functools import lru_cache
+
+IMAGE_PATH = 'src/examples'
+RANDOM_IMAGES_TO_SHOW = 20
+IMAGES_PER_ROW = 5
+
+CAM_METHODS = {
+    "GradCAM": GradCAM,
+    "GradCAM++": GradCAMpp,
+    "XGradCAM": XGradCAM,
+    "SmoothGradCAM++": SmoothGradCAMpp,
+}
+
+model = CustomResNet18(90).eval()
+model.load_state_dict(torch.load('src/results/models/best_model.pth', map_location=torch.device('cpu')))
+cam_model = copy.deepcopy(model)
+data_df = pd.read_csv('src/cache/val_df.csv')
+
+def load_random_images():
+    random_images = list()
+    for i in range(RANDOM_IMAGES_TO_SHOW):
+        idx = np.random.randint(0, len(data_df))
+        p = os.path.join(IMAGE_PATH, data_df.iloc[idx]['path'])
+        animal = data_df.iloc[idx]['target']
+        random_images.append((animal, Image.open(p)))
+    return random_images
+
+def get_class_name(idx):
+    return data_df[data_df['encoded_target'] == idx]['target'].values[0]
+
+@lru_cache(maxsize=100)
+def get_translated(to_translate):
+    return GoogleTranslator(source="en", target="de").translate(to_translate)
+for idx in tqdm(range(90), desc="Translate animals"): get_translated(get_class_name(idx))
+
+def infer_image(image):
+    image = transform(image)
+    image = image.unsqueeze(0)
+    with torch.no_grad():
+        output = model(image)
+    distribution = torch.nn.functional.softmax(output, dim=1)
+    ret = defaultdict(float)
+    for idx, prob in enumerate(distribution[0]):
+        animal = f'{get_class_name(idx)} ({get_translated(get_class_name(idx))})'
+        ret[animal] = prob.item()
+    return ret
+
+def gradcam(image, alpha, cam_method, layer):
+    if layer == 'layer1': layers = [model.resnet.layer1]
+    elif layer == 'layer2': layers = [model.resnet.layer2]
+    elif layer == 'layer3': layers = [model.resnet.layer3]
+    elif layer == 'layer4': layers = [model.resnet.layer4]
+    else: layers = [model.resnet.layer1, model.resnet.layer2, model.resnet.layer3, model.resnet.layer4]
+    
+    model.eval()
+    img_tensor = transform(image).unsqueeze(0)
+    cam = CAM_METHODS[cam_method](model, target_layer=layers)
+    output = model(img_tensor)
+    activation_map = cam(output.squeeze(0).argmax().item(), output)
+    result = overlay_mask(image, to_pil_image(activation_map[0].squeeze(0), mode='F'), alpha=alpha)
+    cam.remove_hooks()
+    
+    # height maximal 300px
+    if result.size[1] > 300:
+        ratio = 300 / result.size[1]
+        result = result.resize((int(result.size[0] * ratio), 300))
+    return result
+
+with gr.Blocks() as demo:
+    with open('src/header.md', 'r') as f:
+        markdown_string = f.read()
+    header = gr.Markdown(markdown_string)
+    
+    with gr.Row(variant="panel", equal_height=True):
+        user_image = gr.Image(
+            type="pil",
+            label="Upload Your Own Image",
+            info="You can also upload your own image for prediction.",
+            scale=1,
+        )
+        
+    with gr.Tab("Predict"):
+        with gr.Column():
+            output = gr.Label(
+                num_top_classes=3,
+                label="Output",
+                info="Top three predicted classes and their confidences.",
+                scale=5,
+            )
+            predict_mode_button = gr.Button(value="Predict Animal", label="Predict", info="Click to make a prediction.", scale=1)
+            predict_mode_button.click(fn=infer_image, inputs=[user_image], outputs=output, queue=True)
+    
+    with gr.Tab("Explain"):
+        with gr.Row():
+            with gr.Column():
+                cam_method = gr.Radio(
+                    list(CAM_METHODS.keys()),
+                    label="GradCAM Method",
+                    value="GradCAM",
+                    interactive=True,
+                    scale=2,
+                )
+                cam_method.description = "Here you can choose the GradCAM method."
+                cam_method.description_place = "left"
+                
+                alpha = gr.Slider(
+                    minimum=.1,
+                    maximum=.9,
+                    value=0.5,
+                    interactive=True,
+                    step=.1,
+                    label="Alpha",
+                    scale=1,
+                )
+                alpha.description = "Here you can choose the alpha value."
+                alpha.description_place = "left"
+                
+                layer = gr.Radio(
+                    ["layer1", "layer2", "layer3", "layer4", "all"],
+                    label="Layer",
+                    value="layer4",
+                    interactive=True,
+                    scale=2,
+                )
+                layer.description = "Here you can choose the layer to visualize."
+                layer.description_place = "left"
+                
+            with gr.Column():
+                output_cam = gr.Image(
+                    type="pil",
+                    label="GradCAM",
+                    info="GradCAM visualization"
+                    
+                )
+                
+                gradcam_mode_button = gr.Button(value="Show GradCAM", label="GradCAM", info="Click to make a prediction.", scale=1)
+                gradcam_mode_button.click(fn=gradcam, inputs=[user_image, alpha, cam_method, layer], outputs=output_cam, queue=True)
+            
+    with gr.Tab("Example Images"):
+        with gr.Column():
+            placeholder = gr.Markdown("## Example Images")
+            showed_images = list()
+            loaded_images = load_random_images()
+            amount_rows = max(1, (len(loaded_images) // IMAGES_PER_ROW))
+            for i in range(amount_rows):
+                with gr.Row():
+                    for j in range(IMAGES_PER_ROW):
+                        animal, image = loaded_images[i * IMAGES_PER_ROW + j]
+                        showed_images.append(gr.Image(
+                            value=image,
+                            label=animal,
+                            type="pil",
+                            interactive=False,
+                        ))
+            
+            
+            
+if __name__ == "__main__":
+    demo.queue()
+    demo.launch()

src/cache/val_df.csv

@@ -0,0 +1,1081 @@
+path,target,encoded_target,split,pred,correct
+antelope\0a37838e99.jpg,antelope,0,val,antelope,True
+antelope\0b1a3af197.jpg,antelope,0,val,antelope,True
+antelope\0b688923b0.jpg,antelope,0,val,antelope,True
+antelope\0fb2e9aa81.jpg,antelope,0,val,antelope,True
+antelope\1d556456dc.jpg,antelope,0,val,deer,False
+antelope\65fd7f96e5.jpg,antelope,0,val,antelope,True
+antelope\9c4d85f9d8.jpg,antelope,0,val,reindeer,False
+antelope\9e39fc9334.jpg,antelope,0,val,antelope,True
+badger\06b48e099f.jpg,badger,1,val,pig,False
+badger\0836f4eb45.jpg,badger,1,val,badger,True
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+bear\290cd7afc5.jpg,bear,3,val,bear,True
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