Spaces:
Sleeping
Sleeping
Upload 2 files
Browse files- app.py +146 -0
- requirements.txt +9 -0
app.py
ADDED
|
@@ -0,0 +1,146 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import os
|
| 2 |
+
import numpy as np
|
| 3 |
+
import torch
|
| 4 |
+
import gradio as gr
|
| 5 |
+
from PIL import Image
|
| 6 |
+
|
| 7 |
+
from diffusers import StableDiffusion3ControlNetPipeline
|
| 8 |
+
from transformers import T5Tokenizer
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
# --- Semantic palette from the model card ---
|
| 12 |
+
CLASS_DICT_ATLAS = {
|
| 13 |
+
0: (0, 0, 0),
|
| 14 |
+
1: (255, 60, 0),
|
| 15 |
+
2: (255, 60, 232),
|
| 16 |
+
3: (134, 79, 117),
|
| 17 |
+
4: (125, 0, 190),
|
| 18 |
+
5: (117, 200, 191),
|
| 19 |
+
6: (230, 91, 101),
|
| 20 |
+
7: (255, 0, 155),
|
| 21 |
+
8: (75, 205, 155),
|
| 22 |
+
9: (100, 37, 200),
|
| 23 |
+
}
|
| 24 |
+
|
| 25 |
+
NAME_CLASS_DICT = {
|
| 26 |
+
0: "background",
|
| 27 |
+
1: "aorta",
|
| 28 |
+
2: "kidney_left",
|
| 29 |
+
3: "liver",
|
| 30 |
+
4: "postcava",
|
| 31 |
+
5: "stomach",
|
| 32 |
+
6: "gall_bladder",
|
| 33 |
+
7: "kidney_right",
|
| 34 |
+
8: "pancreas",
|
| 35 |
+
9: "spleen",
|
| 36 |
+
}
|
| 37 |
+
|
| 38 |
+
|
| 39 |
+
def mask_to_labels(mask_rgb: Image.Image) -> np.ndarray:
|
| 40 |
+
"""Convert RGB mask -> label map using exact color matches."""
|
| 41 |
+
arr = np.asarray(mask_rgb.convert("RGB"), dtype=np.uint8)
|
| 42 |
+
h, w, _ = arr.shape
|
| 43 |
+
labels = np.zeros((h, w), dtype=np.int16)
|
| 44 |
+
|
| 45 |
+
for cls_id, rgb in CLASS_DICT_ATLAS.items():
|
| 46 |
+
m = np.all(arr == np.array(rgb, dtype=np.uint8), axis=-1)
|
| 47 |
+
labels[m] = cls_id
|
| 48 |
+
return labels
|
| 49 |
+
|
| 50 |
+
|
| 51 |
+
# --- Load pipeline once (cached) ---
|
| 52 |
+
MODEL_ID = "onkarsus13/Semantic-Control-Stable-diffusion-3-M-Mask2CT-Atlas"
|
| 53 |
+
PIPE = None
|
| 54 |
+
DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def load_pipe():
|
| 58 |
+
global PIPE
|
| 59 |
+
if PIPE is not None:
|
| 60 |
+
return PIPE
|
| 61 |
+
|
| 62 |
+
dtype = torch.float16 if DEVICE == "cuda" else torch.float32
|
| 63 |
+
|
| 64 |
+
pipe = StableDiffusion3ControlNetPipeline.from_pretrained(
|
| 65 |
+
MODEL_ID,
|
| 66 |
+
torch_dtype=dtype,
|
| 67 |
+
safety_checker=None,
|
| 68 |
+
feature_extractor=None,
|
| 69 |
+
)
|
| 70 |
+
|
| 71 |
+
# Model card explicitly loads tokenizer_3 from this repo
|
| 72 |
+
pipe.tokenizer_3 = T5Tokenizer.from_pretrained(MODEL_ID, subfolder="tokenizer_3")
|
| 73 |
+
|
| 74 |
+
if DEVICE == "cuda":
|
| 75 |
+
pipe.to("cuda")
|
| 76 |
+
# Helps reduce VRAM spikes on smaller GPUs (slower but safer)
|
| 77 |
+
pipe.enable_model_cpu_offload()
|
| 78 |
+
else:
|
| 79 |
+
pipe.to("cpu")
|
| 80 |
+
|
| 81 |
+
PIPE = pipe
|
| 82 |
+
return PIPE
|
| 83 |
+
|
| 84 |
+
|
| 85 |
+
def generate(mask_img, steps, cond_scale, seed):
|
| 86 |
+
if mask_img is None:
|
| 87 |
+
return None, "Please upload a semantic mask image."
|
| 88 |
+
|
| 89 |
+
pipe = load_pipe()
|
| 90 |
+
|
| 91 |
+
mask_pil = mask_img.convert("RGB")
|
| 92 |
+
orig_size = mask_pil.size
|
| 93 |
+
|
| 94 |
+
labels = mask_to_labels(mask_pil)
|
| 95 |
+
unique_ids = np.unique(labels).tolist()
|
| 96 |
+
organ_ids = [i for i in unique_ids if i != 0]
|
| 97 |
+
|
| 98 |
+
if organ_ids:
|
| 99 |
+
organ_names = [NAME_CLASS_DICT[i] for i in organ_ids]
|
| 100 |
+
prompt = "CT image containing " + " ".join(organ_names)
|
| 101 |
+
else:
|
| 102 |
+
organ_names = []
|
| 103 |
+
prompt = "CT image containing abdominal organs"
|
| 104 |
+
|
| 105 |
+
gen = torch.Generator(device=DEVICE).manual_seed(int(seed))
|
| 106 |
+
|
| 107 |
+
out = pipe(
|
| 108 |
+
prompt=prompt,
|
| 109 |
+
control_image=mask_pil,
|
| 110 |
+
height=128,
|
| 111 |
+
width=128,
|
| 112 |
+
num_inference_steps=int(steps),
|
| 113 |
+
generator=gen,
|
| 114 |
+
controlnet_conditioning_scale=float(cond_scale),
|
| 115 |
+
).images[0]
|
| 116 |
+
|
| 117 |
+
out = out.resize(orig_size)
|
| 118 |
+
msg = f"Detected classes: {', '.join(['background'] + organ_names)}\nPrompt: {prompt}"
|
| 119 |
+
return out, msg
|
| 120 |
+
|
| 121 |
+
|
| 122 |
+
with gr.Blocks(title="Mask2CT Atlas Demo (SD3 ControlNet)") as demo:
|
| 123 |
+
gr.Markdown(
|
| 124 |
+
"""
|
| 125 |
+
# Mask → CT (Atlas) demo
|
| 126 |
+
Upload an **RGB semantic mask** (segmentation map) using the palette from the model card.
|
| 127 |
+
The app auto-detects organs in the mask and generates a synthetic CT slice.
|
| 128 |
+
"""
|
| 129 |
+
)
|
| 130 |
+
|
| 131 |
+
with gr.Row():
|
| 132 |
+
mask_in = gr.Image(label="Semantic mask (RGB)", type="pil")
|
| 133 |
+
ct_out = gr.Image(label="Generated CT", type="pil")
|
| 134 |
+
|
| 135 |
+
with gr.Row():
|
| 136 |
+
steps = gr.Slider(10, 80, value=50, step=1, label="Inference steps")
|
| 137 |
+
cond = gr.Slider(0.0, 2.0, value=1.0, step=0.05, label="ControlNet conditioning scale")
|
| 138 |
+
seed = gr.Number(value=1, precision=0, label="Seed")
|
| 139 |
+
|
| 140 |
+
btn = gr.Button("Generate")
|
| 141 |
+
info = gr.Textbox(label="Info", lines=3)
|
| 142 |
+
|
| 143 |
+
btn.click(fn=generate, inputs=[mask_in, steps, cond, seed], outputs=[ct_out, info])
|
| 144 |
+
|
| 145 |
+
if __name__ == "__main__":
|
| 146 |
+
demo.launch()
|
requirements.txt
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
torch
|
| 2 |
+
diffusers>=0.36.0
|
| 3 |
+
transformers
|
| 4 |
+
accelerate
|
| 5 |
+
safetensors
|
| 6 |
+
sentencepiece
|
| 7 |
+
numpy
|
| 8 |
+
pillow
|
| 9 |
+
gradio
|