Geonomic commited on
Commit
27eb7c4
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1 Parent(s): f46c4f6

Update app.py

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Files changed (1) hide show
  1. app.py +9 -6
app.py CHANGED
@@ -14,19 +14,22 @@ import spaces # REQUIRED FOR ZEROGPU
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  # ===================================
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  # 1. LOAD AI MODELS (GLOBALLY CACHED)
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  # ===================================
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- print("Waking up the Genomic Oracle... Loading models into VRAM.")
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  # A. Kadir's Gatekeeper (Local in the Space)
 
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  clf_coding = joblib.load("coding_classifier_universal.joblib")
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  # B. Base DNABERT (Local in the Space)
 
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  tokenizer_base = AutoTokenizer.from_pretrained("DNABERT_Local", trust_remote_code=True)
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- model_base = AutoModel.from_pretrained("DNABERT_Local", trust_remote_code=True)
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  model_base.eval()
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  # C. DNABERT-2 Promoter Model (Local in the Space)
 
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  tokenizer_promoter = AutoTokenizer.from_pretrained("llm_promoter_classifier_v2", trust_remote_code=True)
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- model_promoter = AutoModelForSequenceClassification.from_pretrained("llm_promoter_classifier_v2", trust_remote_code=True)
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  model_promoter.eval()
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  # D. Multi-Feature LightGBM (Fetched from Cloud Repo)
@@ -35,9 +38,9 @@ lgbm_path = hf_hub_download(repo_id="Geonomic/Genomic-Oracle-Weights", filename=
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  lightgbm_model = joblib.load(lgbm_path)
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  # E. Custom ALiBi Lean/Obese BERT (Fetched from Cloud Repo)
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- print("Downloading Phenotype BERT from Model Repo...")
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  tokenizer_pheno = AutoTokenizer.from_pretrained("Geonomic/Genomic-Oracle-Weights", trust_remote_code=True)
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- model_pheno = AutoModelForSequenceClassification.from_pretrained("Geonomic/Genomic-Oracle-Weights", trust_remote_code=True)
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  model_pheno.eval()
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  # Structural Feature Dictionary
@@ -190,7 +193,7 @@ def gradio_inference(dna_sequence, run_mapping):
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  f"🎯 **Location:** {context['location']}",
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  f"🧬 **Strand:** {context['strand']}",
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  f"🧭 **Coordinates:** {context['start']:,} – {context['end']:,}",
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- f"🔬**Notes:** {context['metadata']}"
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  ]
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  context_output = "\n".join(context_lines)
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  else:
 
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  # ===================================
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  # 1. LOAD AI MODELS (GLOBALLY CACHED)
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  # ===================================
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+ print("Waking up the Genomic Oracle...\n")
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  # A. Kadir's Gatekeeper (Local in the Space)
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+ print("Loading Logression Model...\n")
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  clf_coding = joblib.load("coding_classifier_universal.joblib")
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  # B. Base DNABERT (Local in the Space)
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+ print("Loading foundational DNABERT Model Architecture...\n")
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  tokenizer_base = AutoTokenizer.from_pretrained("DNABERT_Local", trust_remote_code=True)
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+ model_base = AutoModel.from_pretrained("DNABERT_Local", trust_remote_code=True, low_cpu_mem_usage=False)
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  model_base.eval()
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  # C. DNABERT-2 Promoter Model (Local in the Space)
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+ print("Loading DNABERT-2 Neural Network...\n")
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  tokenizer_promoter = AutoTokenizer.from_pretrained("llm_promoter_classifier_v2", trust_remote_code=True)
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+ model_promoter = AutoModelForSequenceClassification.from_pretrained("llm_promoter_classifier_v2", trust_remote_code=True, low_cpu_mem_usage=False)
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  model_promoter.eval()
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  # D. Multi-Feature LightGBM (Fetched from Cloud Repo)
 
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  lightgbm_model = joblib.load(lgbm_path)
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  # E. Custom ALiBi Lean/Obese BERT (Fetched from Cloud Repo)
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+ print("Downloading Phenotype BERT from Model Repository...")
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  tokenizer_pheno = AutoTokenizer.from_pretrained("Geonomic/Genomic-Oracle-Weights", trust_remote_code=True)
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+ model_pheno = AutoModelForSequenceClassification.from_pretrained("Geonomic/Genomic-Oracle-Weights", trust_remote_code=True, low_cpu_mem_usage=False)
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  model_pheno.eval()
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  # Structural Feature Dictionary
 
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  f"🎯 **Location:** {context['location']}",
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  f"🧬 **Strand:** {context['strand']}",
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  f"🧭 **Coordinates:** {context['start']:,} – {context['end']:,}",
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+ f"🔬 **Notes:** {context['metadata']}"
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  ]
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  context_output = "\n".join(context_lines)
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  else: