Spaces:
Runtime error
Runtime error
Update app.py
Browse files
app.py
CHANGED
|
@@ -1,37 +1,7 @@
|
|
| 1 |
-
import os
|
| 2 |
-
from PIL import Image
|
| 3 |
import streamlit as st
|
| 4 |
-
import ast
|
| 5 |
import numpy as np
|
| 6 |
-
|
| 7 |
from cellpose import models, io, plot
|
| 8 |
-
from pathlib import Path
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
def rle_decode(mask_rle, shape=(520, 704)):
|
| 12 |
-
"""
|
| 13 |
-
mask_rle: run-length as string formated (start length)
|
| 14 |
-
shape: (height,width) of array to return
|
| 15 |
-
Returns numpy array, 1 - mask, 0 - background
|
| 16 |
-
|
| 17 |
-
"""
|
| 18 |
-
s = mask_rle.split()
|
| 19 |
-
starts, lengths = [np.asarray(x, dtype=int) for x in (s[0:][::2], s[1:][::2])]
|
| 20 |
-
starts -= 1
|
| 21 |
-
ends = starts + lengths
|
| 22 |
-
img = np.zeros(shape[0] * shape[1], dtype=np.uint8)
|
| 23 |
-
for lo, hi in zip(starts, ends):
|
| 24 |
-
img[lo:hi] = 1
|
| 25 |
-
return img.reshape(shape)
|
| 26 |
-
|
| 27 |
-
|
| 28 |
-
def rle_encode(img):
|
| 29 |
-
pixels = img.flatten()
|
| 30 |
-
pixels = np.concatenate([[0], pixels, [0]])
|
| 31 |
-
runs = np.where(pixels[1:] != pixels[:-1])[0] + 1
|
| 32 |
-
runs[1::2] -= runs[::2]
|
| 33 |
-
return " ".join(str(x) for x in runs)
|
| 34 |
-
|
| 35 |
|
| 36 |
def inference(image, model_path, **model_params):
|
| 37 |
img = image
|
|
|
|
|
|
|
|
|
|
| 1 |
import streamlit as st
|
|
|
|
| 2 |
import numpy as np
|
| 3 |
+
from PIL import Image
|
| 4 |
from cellpose import models, io, plot
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 5 |
|
| 6 |
def inference(image, model_path, **model_params):
|
| 7 |
img = image
|