Joey / src /ui /components.py
Joey Callanan
minor changes
56cce54
"""
UI Components Module
This module contains reusable UI components and layouts
for the drug discovery application.
"""
import gradio as gr
from .handlers import VariationHandlers
def create_molecular_analysis_tab():
"""Create the molecular analysis tab components."""
with gr.Column(scale=1):
gr.Markdown("## πŸ”¬ Molecular Analysis")
smiles_input = gr.Textbox(
label="Enter SMILES string",
placeholder="e.g., C[C@H](N)C(=O)O",
info="Enter a valid SMILES string for molecular analysis"
)
# Real-time validation status
validation_status = gr.Markdown("βœ… Ready to analyze")
preview_image = gr.Image(
label="Preview",
show_download_button=False,
width=200,
height=200,
visible=False
)
# Bookmark functionality
with gr.Row():
bookmark_name = gr.Textbox(
placeholder="Enter molecule name (optional)",
label="Molecule Name",
scale=2
)
bookmark_btn = gr.Button("πŸ”– Bookmark", variant="secondary", size="sm", scale=1)
bookmark_status = gr.Markdown("")
gr.Markdown("### πŸ“Š Analysis Results")
analysis_output = gr.Markdown()
with gr.Column(scale=1):
gr.Markdown("### πŸ§ͺ Molecular Structure")
molecule_image = gr.Image(
label="Chemical Structure",
show_download_button=False,
width=400,
height=400
)
return {
'smiles_input': smiles_input,
'validation_status': validation_status,
'preview_image': preview_image,
'bookmark_name': bookmark_name,
'bookmark_btn': bookmark_btn,
'bookmark_status': bookmark_status,
'analysis_output': analysis_output,
'molecule_image': molecule_image
}
def create_chemical_variations_tab():
"""Create the consolidated drug discovery tab with molecular analysis and variations."""
# Add notification container
gr.HTML("""
<div id="notification-container"></div>
<script>
function showNotification(message, type = 'success', duration = 2000) {
// Remove existing notifications
const container = document.getElementById('notification-container');
container.innerHTML = '';
// Create notification element
const notification = document.createElement('div');
notification.className = `temp-notification ${type}`;
notification.textContent = message;
// Add to container
container.appendChild(notification);
// Auto-remove after duration
setTimeout(() => {
if (notification.parentNode) {
notification.style.opacity = '0';
notification.style.transform = 'translateX(100%)';
setTimeout(() => {
if (notification.parentNode) {
notification.remove();
}
}, 300);
}
}, duration);
}
// Listen for validation status changes
document.addEventListener('DOMContentLoaded', function() {
const validationStatus = document.getElementById('validation_status');
if (validationStatus) {
const observer = new MutationObserver(function(mutations) {
mutations.forEach(function(mutation) {
if (mutation.type === 'childList' || mutation.type === 'characterData') {
const text = validationStatus.textContent || validationStatus.innerText;
if (text && text.trim()) {
if (text.includes('βœ…') && text.includes('Ready to analyze')) {
showNotification('βœ… Ready to analyze', 'success');
} else if (text.includes('βœ…') && text.includes('Valid SMILES')) {
showNotification('βœ… Valid SMILES', 'success');
} else if (text.includes('❌')) {
showNotification('❌ Invalid SMILES', 'error');
}
}
}
});
});
observer.observe(validationStatus, { childList: true, characterData: true, subtree: true });
}
});
</script>
""", visible=False)
with gr.Row():
with gr.Column(scale=3):
# Left side: Molecular Analysis
variation_smiles_input = gr.Textbox(
label="Enter SMILES string",
placeholder="e.g., C[C@H](N)C(=O)O",
info="Enter a valid SMILES string for molecular analysis"
)
# Hidden validation status for popup notifications
validation_status = gr.Markdown(
value="",
visible=False,
elem_id="validation_status"
)
preview_image = gr.Image(
label="Preview",
show_download_button=False,
width=200,
height=200,
visible=False
)
# Generate variations controls - moved up for better UX
with gr.Row():
generate_variations_btn = gr.Button("πŸ”„ Generate Variations", variant="primary")
clear_variations_btn = gr.Button("πŸ—‘οΈ Clear", variant="secondary")
# Bookmark functionality
with gr.Row():
bookmark_name = gr.Textbox(
placeholder="Enter molecule name (optional)",
label="Molecule Name",
scale=2
)
bookmark_btn = gr.Button("πŸ”– Bookmark", variant="secondary", size="sm", scale=1)
bookmark_status = gr.Markdown("")
# Hidden components for internal use (not displayed to user)
selected_smiles_display = gr.Textbox(
visible=False,
elem_id="selected_smiles"
)
selected_style_display = gr.Textbox(
visible=False,
elem_id="selected_style"
)
# Enhanced AI Chat Interface
gr.Markdown("#### πŸ€– AI Drug Discovery Assistant")
gr.Markdown("Ask the AI about molecular properties, generate new structures, or get drug discovery insights")
# AI Settings
with gr.Row():
hf_token_input = gr.Textbox(
label="Hugging Face Token",
type="password",
placeholder="Enter your Hugging Face token for AI features",
scale=2
)
ai_temperature = gr.Slider(
minimum=0.1,
maximum=2.0,
value=0.7,
step=0.1,
label="AI Temperature",
scale=1
)
# Main chat interface
ai_chatbot = gr.Chatbot(
label="AI Drug Discovery Chat",
height=400,
elem_id="ai_chatbot",
type="messages"
)
with gr.Row():
ai_chat_input = gr.Textbox(
placeholder="e.g., 'Explain the drug-likeness of this molecule' or 'Generate a more soluble derivative'",
label="Your message",
scale=4
)
ai_send_btn = gr.Button("Send", variant="primary", scale=1)
# AI Generated Structures display
gr.Markdown("#### 🧬 AI Generated Structures")
ai_generated_grid = gr.Gallery(
label="AI Generated Structures",
show_label=False,
elem_id="ai_generated_grid",
columns=3,
rows=2,
height=200,
object_fit="contain",
allow_preview=True
)
with gr.Column(scale=4):
# Right side: Main structure display + variations grid
main_structure_display = gr.Image(
show_download_button=False,
elem_id="main_structure"
)
# Seamless properties display
properties_display = gr.Markdown(
value="*Click 'Analyze Molecule' or select a variation to see properties*",
elem_id="properties_display",
elem_classes="seamless-properties"
)
# Seamless variations section
with gr.Column(elem_id="variations_container"):
variations_grid = gr.Gallery(
show_label=False,
elem_id="variations_gallery",
columns=3,
rows=4,
height='auto',
object_fit="contain",
allow_preview=True,
show_share_button=False,
show_download_button=False
)
# Navigation controls
with gr.Row():
prev_page_btn = gr.Button("⬅️ Previous", size="sm")
page_info = gr.Markdown("Page 1 of 1", elem_classes="page-info")
next_page_btn = gr.Button("➑️ Next", size="sm")
# Grid controls
with gr.Row(elem_classes="grid-controls"):
grid_size_slider = gr.Slider(
minimum=4,
maximum=8,
value=4,
step=1,
label="Grid Columns",
elem_id="grid_size_slider"
)
variation_count_slider = gr.Slider(
minimum=6,
maximum=24,
value=12,
step=6,
label="Number of Variations",
elem_id="variation_count_slider"
)
return {
# Molecular Analysis components
'variation_smiles_input': variation_smiles_input,
'validation_status': validation_status,
'preview_image': preview_image,
'bookmark_name': bookmark_name,
'bookmark_btn': bookmark_btn,
'bookmark_status': bookmark_status,
'main_structure_display': main_structure_display,
'properties_display': properties_display,
# Variations components
'generate_variations_btn': generate_variations_btn,
'clear_variations_btn': clear_variations_btn,
'selected_smiles_display': selected_smiles_display,
'selected_style_display': selected_style_display,
'variations_grid': variations_grid,
'prev_page_btn': prev_page_btn,
'page_info': page_info,
'next_page_btn': next_page_btn,
'grid_size_slider': grid_size_slider,
'variation_count_slider': variation_count_slider,
# AI components
'hf_token_input': hf_token_input,
'ai_temperature': ai_temperature,
'ai_chatbot': ai_chatbot,
'ai_chat_input': ai_chat_input,
'ai_send_btn': ai_send_btn,
'ai_generated_grid': ai_generated_grid
}
def create_molecular_gallery_tab():
"""Create the molecular gallery tab components."""
gr.Markdown("### Common Drug Discovery Molecules")
image_components = []
# Display images in a 3x3 grid
with gr.Row():
for row in range(3):
with gr.Row():
for col in range(3):
idx = row * 3 + col
img = gr.Image(
show_download_button=False,
width=200,
height=200,
label=f"Molecule {idx + 1}",
)
image_components.append(img)
# Bookmarked molecules section
gr.Markdown("### πŸ”– Your Bookmarked Molecules")
bookmarked_gallery = gr.Gallery(
label="Bookmarked Structures",
show_label=False,
elem_id="bookmarked_gallery",
columns=4,
rows=1,
height=200,
object_fit="contain"
)
return {
'image_components': image_components,
'bookmarked_gallery': bookmarked_gallery
}
def create_drug_library_tab():
"""Create the drug discovery library tab components."""
gr.Markdown("### NSAID Drug Series")
drug_images = []
# Display drug molecules
with gr.Row():
for i in range(3): # First row
img = gr.Image(
show_download_button=False,
width=200,
height=200,
label=f"Drug {i + 1}",
)
drug_images.append(img)
with gr.Row():
for i in range(2): # Second row
img = gr.Image(
show_download_button=False,
width=200,
height=200,
label=f"Drug {i + 4}",
)
drug_images.append(img)
return {
'drug_images': drug_images
}
def create_new_experiment_tab():
"""Create a blank workspace tab for new experiments."""
with gr.Column():
gr.Markdown("## πŸ§ͺ New Experiment Workspace")
gr.Markdown(
"This tab is intentionally left blank so you can prototype new "
"ideas without affecting the existing lab, gallery, or library views."
)
gr.Markdown(
"- Add new components here as you explore ideas\n"
"- Copy elements from other tabs if needed\n"
"- Wire up handlers in `src/app.py` once ready"
)
gr.HTML(
"<div style='border:1px dashed #bbb; padding:2rem; text-align:center;'>"
"Your custom UI goes here"
"</div>"
)
return {}