Update code/pdb_featureVector.py

code/pdb_featureVector.py

@@ -230,10 +230,10 @@ def pdb(input_set, mode, impute):
             st.write('searching for pdb:', search)
             try:
                 if search.lower() not in existing_pdb:
-                    st.write('path for pdb: ',Path(path_to_output_files / 'pdb_structures'))
-                    file = pdbl.retrieve_pdb_file(search, pdir=Path(path_to_output_files / 'pdb_structures'), file_format="pdb")
-                    existing_pdb = list(Path(path_to_output_files/'pdb_structures').glob("*"))
-                    st.write('After retrieving existing pdb folder : ',existing_pdb)
+                    path_pdb = 'out_files/pdb/pdb_structures'
+                    st.write('path for pdb: ',path_pdb)
+                    file = pdbl.retrieve_pdb_file(search, pdir=path_pdb, file_format="pdb")
+                    existing_pdb = list(path_pdb.glob("*"))
                 else:
                     print('PDB structure file exists..')
                     for filename in list(Path(path_to_output_files / 'pdb_structures').glob("*")):