Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -215,10 +215,7 @@ def get_coords(annot, alignments, coords, resnums_for_sasa, mode):
 
 
 def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chain, pdbID, mode, path_3D_alignment,file_format = 'gzip'):
-    st.write('PDB SEW IN FN')
-
     pdbSequence = convert_non_standard_amino_acids(pdbSequence)
-    st.write(pdbSequence)
     if mode == 1:
         if source == 'PDB':
             # Step 1: Fetch the PDB file
@@ -277,13 +274,11 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
 
         return alignments, coords, resnums_for_sasa
     elif mode==2:
-            st.write('Hello I am in 3Dalignment')
 
             atomSequence = ''
             coords = []
             resnums_for_sasa = []
             if file_format == 'txt':
-                st.write('Hello I am in 3Dalignment TXT')
                 with open(name, encoding="utf8") as f:
                     for line in f.readlines():
                         if line[0:4].strip() == 'ATOM' and line[13:15].strip() == 'CA':
@@ -295,7 +290,6 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
                             coords.append([line[31:38].strip(), line[39:46].strip(), line[47:54].strip()])
                             resnums_for_sasa.append(line[22:26].strip())
             elif file_format == 'gzip':
-                st.write('Hello I am in 3Dalignment GZIP')
                 with gzip.open(pdb_path, mode='rb') as f:
                     for line in f:
                         line = line.decode()